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Search of human proteins with 239752239
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239752239 PREDICTED: hypothetical protein XP_002348169 [Homo
sapiens]
(150 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239752239 PREDICTED: hypothetical protein XP_002348169 [Homo ... 323 3e-89
gi|239746759 PREDICTED: hypothetical protein XP_002343836 [Homo ... 323 3e-89
gi|239755701 PREDICTED: hypothetical protein [Homo sapiens] 35 0.031
gi|239750211 PREDICTED: hypothetical protein [Homo sapiens] 35 0.031
gi|239744518 PREDICTED: hypothetical protein isoform 2 [Homo sap... 35 0.031
gi|239758067 PREDICTED: similar to facioscapulohumeral muscular ... 33 0.069
gi|167614500 lymphocyte-activation protein 3 precursor [Homo sap... 33 0.090
gi|194363768 homeobox D9 [Homo sapiens] 32 0.20
gi|154146231 DMRT-like family A2 [Homo sapiens] 32 0.20
gi|155029552 hypothetical protein LOC388115 [Homo sapiens] 32 0.20
gi|78499633 phospholipase C, eta 2 [Homo sapiens] 32 0.26
gi|19913385 G6B protein isoform G6b-G precursor [Homo sapiens] 32 0.26
gi|168229174 RNA binding motif protein 27 [Homo sapiens] 32 0.26
gi|53829370 neuralized homolog 4 isoform 1 [Homo sapiens] 31 0.34
gi|53829368 neuralized homolog 4 isoform 2 [Homo sapiens] 31 0.34
gi|239755909 PREDICTED: hypothetical protein [Homo sapiens] 31 0.45
gi|239750423 PREDICTED: hypothetical protein XP_002347390 [Homo ... 31 0.45
gi|90403598 mesoderm posterior 2 homolog [Homo sapiens] 31 0.45
gi|15826852 acyl-Coenzyme A binding domain containing 3 [Homo sa... 31 0.45
gi|226823326 methenyltetrahydrofolate synthetase domain containi... 30 0.59
gi|226823324 methenyltetrahydrofolate synthetase domain containi... 30 0.59
gi|226823322 methenyltetrahydrofolate synthetase domain containi... 30 0.59
gi|226823319 methenyltetrahydrofolate synthetase domain containi... 30 0.59
gi|116875838 methenyltetrahydrofolate synthetase domain containi... 30 0.59
gi|85362735 nuclear receptor subfamily 1, group H, member 2 [Hom... 30 0.59
gi|239743293 PREDICTED: mucin 12 [Homo sapiens] 30 0.59
gi|117414137 retinitis pigmentosa 1-like 1 [Homo sapiens] 30 0.59
gi|51093859 calcium channel, voltage-dependent, T type, alpha 1I... 30 0.59
gi|21361077 calcium channel, voltage-dependent, T type, alpha 1I... 30 0.59
gi|116174748 developing brain homeobox 2 [Homo sapiens] 30 0.59
>gi|239752239 PREDICTED: hypothetical protein XP_002348169 [Homo
sapiens]
Length = 150
Score = 323 bits (828), Expect = 3e-89
Identities = 150/150 (100%), Positives = 150/150 (100%)
Query: 1 MFMRWPTRVTPSSTKSSLVSAGRCAPSISWSSKRSRCSPRWMLSSQSPTSNLLQSCSGFC 60
MFMRWPTRVTPSSTKSSLVSAGRCAPSISWSSKRSRCSPRWMLSSQSPTSNLLQSCSGFC
Sbjct: 1 MFMRWPTRVTPSSTKSSLVSAGRCAPSISWSSKRSRCSPRWMLSSQSPTSNLLQSCSGFC 60
Query: 61 WKGRRGPGAPGPGPDAGEGSGDGEGERLRALTLRTTKRTSLGSCGMERLDDLRMLLRWAT 120
WKGRRGPGAPGPGPDAGEGSGDGEGERLRALTLRTTKRTSLGSCGMERLDDLRMLLRWAT
Sbjct: 61 WKGRRGPGAPGPGPDAGEGSGDGEGERLRALTLRTTKRTSLGSCGMERLDDLRMLLRWAT 120
Query: 121 SWQGPAGCPGHQLVPPPGNACPCSAAAGGS 150
SWQGPAGCPGHQLVPPPGNACPCSAAAGGS
Sbjct: 121 SWQGPAGCPGHQLVPPPGNACPCSAAAGGS 150
>gi|239746759 PREDICTED: hypothetical protein XP_002343836 [Homo
sapiens]
Length = 150
Score = 323 bits (828), Expect = 3e-89
Identities = 150/150 (100%), Positives = 150/150 (100%)
Query: 1 MFMRWPTRVTPSSTKSSLVSAGRCAPSISWSSKRSRCSPRWMLSSQSPTSNLLQSCSGFC 60
MFMRWPTRVTPSSTKSSLVSAGRCAPSISWSSKRSRCSPRWMLSSQSPTSNLLQSCSGFC
Sbjct: 1 MFMRWPTRVTPSSTKSSLVSAGRCAPSISWSSKRSRCSPRWMLSSQSPTSNLLQSCSGFC 60
Query: 61 WKGRRGPGAPGPGPDAGEGSGDGEGERLRALTLRTTKRTSLGSCGMERLDDLRMLLRWAT 120
WKGRRGPGAPGPGPDAGEGSGDGEGERLRALTLRTTKRTSLGSCGMERLDDLRMLLRWAT
Sbjct: 61 WKGRRGPGAPGPGPDAGEGSGDGEGERLRALTLRTTKRTSLGSCGMERLDDLRMLLRWAT 120
Query: 121 SWQGPAGCPGHQLVPPPGNACPCSAAAGGS 150
SWQGPAGCPGHQLVPPPGNACPCSAAAGGS
Sbjct: 121 SWQGPAGCPGHQLVPPPGNACPCSAAAGGS 150
>gi|239755701 PREDICTED: hypothetical protein [Homo sapiens]
Length = 155
Score = 34.7 bits (78), Expect = 0.031
Identities = 28/95 (29%), Positives = 42/95 (44%), Gaps = 3/95 (3%)
Query: 31 SSKRSRCSPRWMLSSQSPTSNLLQSCSGFCWKGRRGPGAPGPGPDAGEGSGDGEGERLRA 90
SS R + + ++ P + +L S + + G R P +PGP P A GSG G G R A
Sbjct: 53 SSLRDTTTRHFQGRNRYPQTPILDSHN---FPGLRQPHSPGPPPRAPAGSGSGAGRREGA 109
Query: 91 LTLRTTKRTSLGSCGMERLDDLRMLLRWATSWQGP 125
R+ + G + L L +L +S P
Sbjct: 110 EFARSRGKEKRGVRALRSLRILPQILPQLSSLAEP 144
>gi|239750211 PREDICTED: hypothetical protein [Homo sapiens]
Length = 155
Score = 34.7 bits (78), Expect = 0.031
Identities = 28/95 (29%), Positives = 42/95 (44%), Gaps = 3/95 (3%)
Query: 31 SSKRSRCSPRWMLSSQSPTSNLLQSCSGFCWKGRRGPGAPGPGPDAGEGSGDGEGERLRA 90
SS R + + ++ P + +L S + + G R P +PGP P A GSG G G R A
Sbjct: 53 SSLRDTTTRHFQGRNRYPQTPILDSHN---FPGLRQPHSPGPPPRAPAGSGSGAGRREGA 109
Query: 91 LTLRTTKRTSLGSCGMERLDDLRMLLRWATSWQGP 125
R+ + G + L L +L +S P
Sbjct: 110 EFARSRGKEKRGVRALRSLRILPQILPQLSSLAEP 144
>gi|239744518 PREDICTED: hypothetical protein isoform 2 [Homo
sapiens]
Length = 155
Score = 34.7 bits (78), Expect = 0.031
Identities = 28/95 (29%), Positives = 42/95 (44%), Gaps = 3/95 (3%)
Query: 31 SSKRSRCSPRWMLSSQSPTSNLLQSCSGFCWKGRRGPGAPGPGPDAGEGSGDGEGERLRA 90
SS R + + ++ P + +L S + + G R P +PGP P A GSG G G R A
Sbjct: 53 SSLRDTTTRHFQGRNRYPQTPILDSHN---FPGLRQPHSPGPPPRAPAGSGSGAGRREGA 109
Query: 91 LTLRTTKRTSLGSCGMERLDDLRMLLRWATSWQGP 125
R+ + G + L L +L +S P
Sbjct: 110 EFARSRGKEKRGVRALRSLRILPQILPQLSSLAEP 144
>gi|239758067 PREDICTED: similar to facioscapulohumeral muscular
dystrophy [Homo sapiens]
Length = 468
Score = 33.5 bits (75), Expect = 0.069
Identities = 26/82 (31%), Positives = 35/82 (42%), Gaps = 21/82 (25%)
Query: 65 RGPGAPGPGPDAGEGSGDGEGERLRALTLRTTKRTSLGSCGMERLDDLRMLLRWATSWQG 124
R PG PGP P+A D G+R+ L C + L+ + + +G
Sbjct: 392 RRPGDPGPSPNA-----DSPGKRVGQAHL----------CPVALLERAQAV----PPRKG 432
Query: 125 PAGCPGHQLVPPPGNACPCSAA 146
PAGC H P P CPC+ A
Sbjct: 433 PAGC--HPAGPGPPGMCPCAEA 452
>gi|167614500 lymphocyte-activation protein 3 precursor [Homo
sapiens]
Length = 525
Score = 33.1 bits (74), Expect = 0.090
Identities = 18/42 (42%), Positives = 20/42 (47%), Gaps = 6/42 (14%)
Query: 109 LDDLRMLLRWATSWQG------PAGCPGHQLVPPPGNACPCS 144
L DL +L R +WQ PA PGH L P P A P S
Sbjct: 50 LQDLSLLRRAGVTWQHQPDSGPPAAAPGHPLAPGPHPAAPSS 91
>gi|194363768 homeobox D9 [Homo sapiens]
Length = 352
Score = 32.0 bits (71), Expect = 0.20
Identities = 26/80 (32%), Positives = 36/80 (45%), Gaps = 10/80 (12%)
Query: 6 PTRVTPSSTKSSLVSAGRCAPSISWSSKRSRCSPRWMLSSQSPTSNLLQSCSGFCWKGRR 65
P T +ST SS + S+S SSKR+ CS + +S SC+ F + +
Sbjct: 168 PAPATAASTTSS------SSTSLSSSSKRTECS---VARESQGSSGPEFSCNSFLQE-KA 217
Query: 66 GPGAPGPGPDAGEGSGDGEG 85
G GP AG G+ G G
Sbjct: 218 AAATGGTGPGAGIGAATGTG 237
>gi|154146231 DMRT-like family A2 [Homo sapiens]
Length = 542
Score = 32.0 bits (71), Expect = 0.20
Identities = 23/83 (27%), Positives = 30/83 (36%), Gaps = 18/83 (21%)
Query: 66 GPGAPGPGPDAGEGSGDGEGERLRALTLRTTKRTSLGSCGMERLDDLRMLLRWATSWQGP 125
GPG P G GS +G+GE L + + GSC G
Sbjct: 225 GPGTSSPEVRPGSGSENGDGESFSGSPLARASKEAGGSC------------------PGS 266
Query: 126 AGCPGHQLVPPPGNACPCSAAAG 148
AG G PG+A P + +G
Sbjct: 267 AGPGGGGEEDSPGSASPLGSESG 289
>gi|155029552 hypothetical protein LOC388115 [Homo sapiens]
Length = 534
Score = 32.0 bits (71), Expect = 0.20
Identities = 22/68 (32%), Positives = 29/68 (42%), Gaps = 10/68 (14%)
Query: 60 CWKGRRGPGAPGPGPDAGEGSGDGEGERLRALTLRTTKRTSLGSCGMERLDDLRMLLRWA 119
C + +RG G P PG D SG +G R+ R + S G+ G+ R
Sbjct: 475 CPEPQRGAGLPEPGEDRSGKSGAQQGLAPRSRPTRGGSQRSRGTAGVRR----------R 524
Query: 120 TSWQGPAG 127
T GPAG
Sbjct: 525 TGRPGPAG 532
>gi|78499633 phospholipase C, eta 2 [Homo sapiens]
Length = 1416
Score = 31.6 bits (70), Expect = 0.26
Identities = 28/84 (33%), Positives = 35/84 (41%), Gaps = 21/84 (25%)
Query: 67 PGAPGPGPD--AGEGSGDGEGERLRALTLRTTKRTSLGSCGMERLDDLRMLLRWATSWQG 124
P PGP P+ A EG G G R L +T+R C +E T +
Sbjct: 965 PPGPGPAPEAPAQEGPGSGSPRDTRPL---STQRPLPPLCSLE------------TIAEE 1009
Query: 125 PAGCPGHQLVPPPGNACPCSAAAG 148
PA PG PPP A P S++ G
Sbjct: 1010 PAPGPG----PPPPAAVPTSSSQG 1029
>gi|19913385 G6B protein isoform G6b-G precursor [Homo sapiens]
Length = 222
Score = 31.6 bits (70), Expect = 0.26
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 39 PRWMLSSQSPTSNLLQSCSGFCWKGRRGPGAPGPGPDAGEGSGDGEG 85
PR+ LS P S+ ++ + KG R + GPGP G+G G G G
Sbjct: 178 PRFALSP--PHSSTCENRAPEASKGGRAQDSRGPGPGTGKGMGMGRG 222
>gi|168229174 RNA binding motif protein 27 [Homo sapiens]
Length = 1060
Score = 31.6 bits (70), Expect = 0.26
Identities = 14/24 (58%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
Query: 66 GPGAPGPGPDAGEGSGDGEGERLR 89
GPG PGPGP G G G G G +R
Sbjct: 340 GPG-PGPGPGPGPGPGPGPGHSMR 362
Score = 30.0 bits (66), Expect = 0.76
Identities = 14/23 (60%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Query: 66 GPGAPGPGPDAGEGSGDGEGERL 88
GPG PGPGP G G G G RL
Sbjct: 342 GPG-PGPGPGPGPGPGPGHSMRL 363
Score = 28.1 bits (61), Expect = 2.9
Identities = 11/19 (57%), Positives = 11/19 (57%)
Query: 67 PGAPGPGPDAGEGSGDGEG 85
P PGPGP G G G G G
Sbjct: 334 PPMPGPGPGPGPGPGPGPG 352
Score = 26.9 bits (58), Expect = 6.5
Identities = 12/19 (63%), Positives = 12/19 (63%), Gaps = 1/19 (5%)
Query: 67 PGAPGPGPDAGEGSGDGEG 85
PG PGPGP G G G G G
Sbjct: 337 PG-PGPGPGPGPGPGPGPG 354
>gi|53829370 neuralized homolog 4 isoform 1 [Homo sapiens]
Length = 1562
Score = 31.2 bits (69), Expect = 0.34
Identities = 19/46 (41%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Query: 63 GRRGPGAPGPGPDAGEGSGDGEGERLRA---LTLRTTKRTSLGSCG 105
G GPG G G +G GSG G L + L RT + SL +CG
Sbjct: 13 GGPGPGPGGGGGPSGSGSGPGSNGGLGSGGELHPRTGRLVSLSACG 58
>gi|53829368 neuralized homolog 4 isoform 2 [Homo sapiens]
Length = 1560
Score = 31.2 bits (69), Expect = 0.34
Identities = 19/46 (41%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Query: 63 GRRGPGAPGPGPDAGEGSGDGEGERLRA---LTLRTTKRTSLGSCG 105
G GPG G G +G GSG G L + L RT + SL +CG
Sbjct: 13 GGPGPGPGGGGGPSGSGSGPGSNGGLGSGGELHPRTGRLVSLSACG 58
>gi|239755909 PREDICTED: hypothetical protein [Homo sapiens]
Length = 212
Score = 30.8 bits (68), Expect = 0.45
Identities = 29/98 (29%), Positives = 37/98 (37%), Gaps = 23/98 (23%)
Query: 60 CWK-----GRRG-----------PGAPGPGPDAGEGSGDGEGERLRALTLRTTKRTSLGS 103
CWK GR G PGA GPGP +G+ S G R ++ T+ S
Sbjct: 92 CWKEQGPGGRGGASSSELRALGRPGAAGPGPGSGDASALAGGP--RPVSRDTSSARSGAC 149
Query: 104 CGMERLDDLRMLLRW-ATSWQGPAGCPGHQLVPPPGNA 140
CG R + W A+S C + P G A
Sbjct: 150 CGCSRANS----QYWRASSRAAATACNSQNSLQPRGAA 183
>gi|239750423 PREDICTED: hypothetical protein XP_002347390 [Homo
sapiens]
Length = 212
Score = 30.8 bits (68), Expect = 0.45
Identities = 29/98 (29%), Positives = 37/98 (37%), Gaps = 23/98 (23%)
Query: 60 CWK-----GRRG-----------PGAPGPGPDAGEGSGDGEGERLRALTLRTTKRTSLGS 103
CWK GR G PGA GPGP +G+ S G R ++ T+ S
Sbjct: 92 CWKEQGPGGRGGASSSELRALGRPGAAGPGPGSGDASALAGGP--RPVSRDTSSARSGAC 149
Query: 104 CGMERLDDLRMLLRW-ATSWQGPAGCPGHQLVPPPGNA 140
CG R + W A+S C + P G A
Sbjct: 150 CGCSRANS----QYWRASSRAAATACNSQNSLQPRGAA 183
>gi|90403598 mesoderm posterior 2 homolog [Homo sapiens]
Length = 397
Score = 30.8 bits (68), Expect = 0.45
Identities = 23/76 (30%), Positives = 29/76 (38%), Gaps = 15/76 (19%)
Query: 65 RGPG-----APGPGPDAGEGSGDGEGERLRALTLRTTKRTSLGSCGMERLDDLRMLLRWA 119
RGP A G G G+G G G+G+ + G G R L +
Sbjct: 168 RGPAEAQTQAEGQGQGQGQGQGQGQGQG---------QGQGQGQ-GQGRRPGLVSAVLAE 217
Query: 120 TSWQGPAGCPGHQLVP 135
SW P+ CPG Q P
Sbjct: 218 ASWGSPSACPGAQAAP 233
>gi|15826852 acyl-Coenzyme A binding domain containing 3 [Homo
sapiens]
Length = 528
Score = 30.8 bits (68), Expect = 0.45
Identities = 14/30 (46%), Positives = 16/30 (53%)
Query: 65 RGPGAPGPGPDAGEGSGDGEGERLRALTLR 94
RGPGA G P+ GE + G E R L R
Sbjct: 49 RGPGASGEQPEPGEAAAGGAAEEARRLEQR 78
>gi|226823326 methenyltetrahydrofolate synthetase domain containing
isoform 5 [Homo sapiens]
Length = 363
Score = 30.4 bits (67), Expect = 0.59
Identities = 27/73 (36%), Positives = 32/73 (43%), Gaps = 17/73 (23%)
Query: 63 GRRGPGAPGP---GPDAGEGSGDGEGERLRALTLRTTKRTSLGSC-GMERLDDLRMLLRW 118
GRR P PGP +A GS GEG L A +G+ G R+ DL+ LR
Sbjct: 256 GRRPPDTPGPETNSMEAAPGSPPGEGAPLAA-------DVYVGNLPGDARVSDLKRALRE 308
Query: 119 ATS------WQGP 125
S WQGP
Sbjct: 309 LGSVPLRLTWQGP 321
>gi|226823324 methenyltetrahydrofolate synthetase domain containing
isoform 4 [Homo sapiens]
Length = 382
Score = 30.4 bits (67), Expect = 0.59
Identities = 27/73 (36%), Positives = 32/73 (43%), Gaps = 17/73 (23%)
Query: 63 GRRGPGAPGP---GPDAGEGSGDGEGERLRALTLRTTKRTSLGSC-GMERLDDLRMLLRW 118
GRR P PGP +A GS GEG L A +G+ G R+ DL+ LR
Sbjct: 275 GRRPPDTPGPETNSMEAAPGSPPGEGAPLAA-------DVYVGNLPGDARVSDLKRALRE 327
Query: 119 ATS------WQGP 125
S WQGP
Sbjct: 328 LGSVPLRLTWQGP 340
>gi|226823322 methenyltetrahydrofolate synthetase domain containing
isoform 2 [Homo sapiens]
Length = 383
Score = 30.4 bits (67), Expect = 0.59
Identities = 27/73 (36%), Positives = 32/73 (43%), Gaps = 17/73 (23%)
Query: 63 GRRGPGAPGP---GPDAGEGSGDGEGERLRALTLRTTKRTSLGSC-GMERLDDLRMLLRW 118
GRR P PGP +A GS GEG L A +G+ G R+ DL+ LR
Sbjct: 276 GRRPPDTPGPETNSMEAAPGSPPGEGAPLAA-------DVYVGNLPGDARVSDLKRALRE 328
Query: 119 ATS------WQGP 125
S WQGP
Sbjct: 329 LGSVPLRLTWQGP 341
>gi|226823319 methenyltetrahydrofolate synthetase domain containing
isoform 1 [Homo sapiens]
Length = 383
Score = 30.4 bits (67), Expect = 0.59
Identities = 27/73 (36%), Positives = 32/73 (43%), Gaps = 17/73 (23%)
Query: 63 GRRGPGAPGP---GPDAGEGSGDGEGERLRALTLRTTKRTSLGSC-GMERLDDLRMLLRW 118
GRR P PGP +A GS GEG L A +G+ G R+ DL+ LR
Sbjct: 276 GRRPPDTPGPETNSMEAAPGSPPGEGAPLAA-------DVYVGNLPGDARVSDLKRALRE 328
Query: 119 ATS------WQGP 125
S WQGP
Sbjct: 329 LGSVPLRLTWQGP 341
>gi|116875838 methenyltetrahydrofolate synthetase domain containing
isoform 3 [Homo sapiens]
Length = 382
Score = 30.4 bits (67), Expect = 0.59
Identities = 27/73 (36%), Positives = 32/73 (43%), Gaps = 17/73 (23%)
Query: 63 GRRGPGAPGP---GPDAGEGSGDGEGERLRALTLRTTKRTSLGSC-GMERLDDLRMLLRW 118
GRR P PGP +A GS GEG L A +G+ G R+ DL+ LR
Sbjct: 275 GRRPPDTPGPETNSMEAAPGSPPGEGAPLAA-------DVYVGNLPGDARVSDLKRALRE 327
Query: 119 ATS------WQGP 125
S WQGP
Sbjct: 328 LGSVPLRLTWQGP 340
>gi|85362735 nuclear receptor subfamily 1, group H, member 2 [Homo
sapiens]
Length = 461
Score = 30.4 bits (67), Expect = 0.59
Identities = 21/47 (44%), Positives = 25/47 (53%), Gaps = 7/47 (14%)
Query: 45 SQSPTSNLLQSCSGFCWKGRRGPGAPGPGPDAG-EGSGDGEGERLRA 90
SQSP S S GPGA G +AG +GSG+GEG +L A
Sbjct: 182 SQSPVGPQGSSSSA------SGPGASPGGSEAGSQGSGEGEGVQLTA 222
>gi|239743293 PREDICTED: mucin 12 [Homo sapiens]
Length = 5478
Score = 30.4 bits (67), Expect = 0.59
Identities = 28/108 (25%), Positives = 45/108 (41%), Gaps = 11/108 (10%)
Query: 6 PTRVTPSSTKSSLVSAGRCAPSISWSSKRSRCSPRWMLSSQSPTSNLLQSCSGFCWKGRR 65
P+R++PSST+++ + PS+S S SPR ++ SP + S
Sbjct: 2971 PSRLSPSSTETTTLPGSPTTPSLSEKSTTFYTSPRSPDATLSPATTTSSGVSEESSTSHS 3030
Query: 66 GPGAPGPG--PDAGEGSG---------DGEGERLRALTLRTTKRTSLG 102
PG+ PD+ SG +G L+ +T +SLG
Sbjct: 3031 QPGSTHTTAFPDSTTTSGLSQEPTASHSSQGSTEATLSPGSTTASSLG 3078
Score = 30.4 bits (67), Expect = 0.59
Identities = 28/108 (25%), Positives = 45/108 (41%), Gaps = 11/108 (10%)
Query: 6 PTRVTPSSTKSSLVSAGRCAPSISWSSKRSRCSPRWMLSSQSPTSNLLQSCSGFCWKGRR 65
P+R++PSST+++ + PS+S S SPR ++ SP + S
Sbjct: 4054 PSRLSPSSTETTTLPGSPTTPSLSEKSTTFYTSPRSPDATLSPATTTSSGVSEESSTSHS 4113
Query: 66 GPGAPGPG--PDAGEGSG---------DGEGERLRALTLRTTKRTSLG 102
PG+ PD+ SG +G L+ +T +SLG
Sbjct: 4114 QPGSTHTTAFPDSTTTSGLSQEPTTSHSSQGSTEATLSPGSTTASSLG 4161
Score = 29.6 bits (65), Expect = 1.00
Identities = 18/64 (28%), Positives = 30/64 (46%)
Query: 6 PTRVTPSSTKSSLVSAGRCAPSISWSSKRSRCSPRWMLSSQSPTSNLLQSCSGFCWKGRR 65
P+R++PSST+++ + PS+S S SPR ++ SP + S
Sbjct: 1414 PSRLSPSSTETTTLPGSPTTPSLSEKSTTFYTSPRSPDATLSPATTTSSGVSEESSTSHS 1473
Query: 66 GPGA 69
PG+
Sbjct: 1474 QPGS 1477
Score = 29.6 bits (65), Expect = 1.00
Identities = 18/64 (28%), Positives = 30/64 (46%)
Query: 6 PTRVTPSSTKSSLVSAGRCAPSISWSSKRSRCSPRWMLSSQSPTSNLLQSCSGFCWKGRR 65
P+R++PSST+++ + PS+S S SPR ++ SP + S
Sbjct: 2497 PSRLSPSSTETTTLPGSPTTPSLSEKSTTFYTSPRSPDATLSPATTTSSGVSEESSTSHS 2556
Query: 66 GPGA 69
PG+
Sbjct: 2557 QPGS 2560
>gi|117414137 retinitis pigmentosa 1-like 1 [Homo sapiens]
Length = 2400
Score = 30.4 bits (67), Expect = 0.59
Identities = 29/97 (29%), Positives = 39/97 (40%), Gaps = 14/97 (14%)
Query: 25 APSISW-------SSKRSRCSPRWMLSSQSPTSNLLQSCS----GFCWKGRRGPG---AP 70
+P SW + R R P+ SS T + QS + G +G R PG +P
Sbjct: 842 SPEASWLCGRYCPTPPRGRPCPQRRSSSCGSTGSSHQSTARGPGGSPQEGTRQPGPTPSP 901
Query: 71 GPGPDAGEGSGDGEGERLRALTLRTTKRTSLGSCGME 107
GP A S +G R L+ T R+ G G E
Sbjct: 902 GPNSGASRRSSASQGAGSRGLSEEKTLRSGGGPQGQE 938
>gi|51093859 calcium channel, voltage-dependent, T type, alpha 1I
subunit isoform b [Homo sapiens]
Length = 2188
Score = 30.4 bits (67), Expect = 0.59
Identities = 23/70 (32%), Positives = 26/70 (37%), Gaps = 8/70 (11%)
Query: 67 PGAPGPGPDAGEGSGDGEGERLRALTLRTTKRTSLGSCGMERLDDLRMLLRWATSWQG-- 124
PGAPG GP G GD EG R + L S + D L L + G
Sbjct: 1734 PGAPGRGPGGAGGGGDTEGGLCRRCYSPAQENLWLDSVSLIIKDSLEGELTIIDNLSGSI 1793
Query: 125 ------PAGC 128
PAGC
Sbjct: 1794 FHHYSSPAGC 1803
Score = 28.9 bits (63), Expect = 1.7
Identities = 26/86 (30%), Positives = 33/86 (38%), Gaps = 14/86 (16%)
Query: 66 GPGAPGPGPDAGEGSGDGEGERLRALTLRTTKRTSLGSCGMERLDDLRMLLRWATSWQGP 125
GP AP PGP AG L+ +R SL G+ L LR R +S
Sbjct: 2012 GPPAPAPGPRAG-------------LSPAARRRLSLRGRGLFSLRGLRAHQRSHSSGGST 2058
Query: 126 A-GCPGHQLVPPPGNACPCSAAAGGS 150
+ GC H + P A GG+
Sbjct: 2059 SPGCTHHDSMDPSDEEGRGGAGGGGA 2084
>gi|21361077 calcium channel, voltage-dependent, T type, alpha 1I
subunit isoform a [Homo sapiens]
Length = 2223
Score = 30.4 bits (67), Expect = 0.59
Identities = 23/70 (32%), Positives = 26/70 (37%), Gaps = 8/70 (11%)
Query: 67 PGAPGPGPDAGEGSGDGEGERLRALTLRTTKRTSLGSCGMERLDDLRMLLRWATSWQG-- 124
PGAPG GP G GD EG R + L S + D L L + G
Sbjct: 1769 PGAPGRGPGGAGGGGDTEGGLCRRCYSPAQENLWLDSVSLIIKDSLEGELTIIDNLSGSI 1828
Query: 125 ------PAGC 128
PAGC
Sbjct: 1829 FHHYSSPAGC 1838
Score = 28.9 bits (63), Expect = 1.7
Identities = 26/86 (30%), Positives = 33/86 (38%), Gaps = 14/86 (16%)
Query: 66 GPGAPGPGPDAGEGSGDGEGERLRALTLRTTKRTSLGSCGMERLDDLRMLLRWATSWQGP 125
GP AP PGP AG L+ +R SL G+ L LR R +S
Sbjct: 2047 GPPAPAPGPRAG-------------LSPAARRRLSLRGRGLFSLRGLRAHQRSHSSGGST 2093
Query: 126 A-GCPGHQLVPPPGNACPCSAAAGGS 150
+ GC H + P A GG+
Sbjct: 2094 SPGCTHHDSMDPSDEEGRGGAGGGGA 2119
>gi|116174748 developing brain homeobox 2 [Homo sapiens]
Length = 339
Score = 30.4 bits (67), Expect = 0.59
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 14 TKSSLVSAGRCAPSISWSSKRSRCSPRWMLSSQSPTSNLLQSCSG 58
++S+L C PSI W + SPRW +S P+ L+Q SG
Sbjct: 266 SRSALGFPSPC-PSI-WDVPQQHSSPRWRENSPEPSERLIQESSG 308
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.131 0.445
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,453,837
Number of Sequences: 37866
Number of extensions: 448518
Number of successful extensions: 3810
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 119
Number of HSP's that attempted gapping in prelim test: 3461
Number of HSP's gapped (non-prelim): 426
length of query: 150
length of database: 18,247,518
effective HSP length: 93
effective length of query: 57
effective length of database: 14,725,980
effective search space: 839380860
effective search space used: 839380860
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.