Guide to the Human Genome
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Search of human proteins with 239751880

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239751880 PREDICTED: hypothetical protein XP_002348020 [Homo
sapiens]
         (146 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239751880 PREDICTED: hypothetical protein XP_002348020 [Homo ...   316   5e-87
gi|239746369 PREDICTED: hypothetical protein XP_002343699 [Homo ...   316   5e-87
gi|239756458 PREDICTED: similar to ZNF668 protein [Homo sapiens]       49   1e-06
gi|239750986 PREDICTED: hypothetical protein XP_002347637 [Homo ...    49   1e-06
gi|239745391 PREDICTED: hypothetical protein XP_002343487 [Homo ...    49   1e-06
gi|239757412 PREDICTED: hypothetical protein XP_002345272 [Homo ...    45   3e-05
gi|239746366 PREDICTED: hypothetical protein XP_002343738 [Homo ...    40   5e-04
gi|189571667 zinc finger protein 696 [Homo sapiens]                    35   0.029
gi|134244285 Notch homolog 3 [Homo sapiens]                            34   0.039
gi|239754229 PREDICTED: hypothetical protein [Homo sapiens]            34   0.039
gi|116256460 zinc finger protein 775 [Homo sapiens]                    33   0.066
gi|20162554 Kruppel-like factor 14 [Homo sapiens]                      33   0.086
gi|31377595 zinc finger CCCH-type containing 18 [Homo sapiens]         33   0.086
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]      32   0.15 
gi|239757331 PREDICTED: hypothetical protein [Homo sapiens]            32   0.15 
gi|239751841 PREDICTED: hypothetical protein [Homo sapiens]            32   0.15 
gi|239748761 PREDICTED: hypothetical protein XP_002346789 [Homo ...    32   0.15 
gi|239746332 PREDICTED: hypothetical protein XP_002343733 [Homo ...    32   0.15 
gi|239742806 PREDICTED: hypothetical protein XP_002342653 [Homo ...    32   0.15 
gi|157739932 mesogenin 1 [Homo sapiens]                                32   0.19 
gi|5031759 homeobox A11 [Homo sapiens]                                 32   0.19 
gi|239753984 PREDICTED: hypothetical protein [Homo sapiens]            32   0.19 
gi|169168504 PREDICTED: hypothetical protein [Homo sapiens]            32   0.19 
gi|169167589 PREDICTED: hypothetical protein [Homo sapiens]            32   0.19 
gi|40538799 ataxin-1 ubiquitin-like interacting protein [Homo sa...    32   0.19 
gi|239751877 PREDICTED: hypothetical protein XP_002348035 [Homo ...    32   0.25 
gi|40807452 peroxisome proliferator-activated receptor gamma, co...    31   0.33 
gi|33356174 pinin, desmosome associated protein [Homo sapiens]         31   0.33 
gi|194239638 zinc finger protein 449 [Homo sapiens]                    31   0.33 
gi|126090909 engrailed homeobox 1 [Homo sapiens]                       31   0.43 

>gi|239751880 PREDICTED: hypothetical protein XP_002348020 [Homo
           sapiens]
          Length = 146

 Score =  316 bits (809), Expect = 5e-87
 Identities = 146/146 (100%), Positives = 146/146 (100%)

Query: 1   MAGGVGQAGSPFPSVSSSSSAPAVAGMPSSSHGGSDPGSGAHRGTPMASGCLRFAWRRSV 60
           MAGGVGQAGSPFPSVSSSSSAPAVAGMPSSSHGGSDPGSGAHRGTPMASGCLRFAWRRSV
Sbjct: 1   MAGGVGQAGSPFPSVSSSSSAPAVAGMPSSSHGGSDPGSGAHRGTPMASGCLRFAWRRSV 60

Query: 61  LASVKRSRQMGHWYGRSPECTRWWCASSPASRKRRGHSGQRKGRRPAWMLQCRRRWLERL 120
           LASVKRSRQMGHWYGRSPECTRWWCASSPASRKRRGHSGQRKGRRPAWMLQCRRRWLERL
Sbjct: 61  LASVKRSRQMGHWYGRSPECTRWWCASSPASRKRRGHSGQRKGRRPAWMLQCRRRWLERL 120

Query: 121 KVLPQTLHWCGFSSECEMLWRSRSER 146
           KVLPQTLHWCGFSSECEMLWRSRSER
Sbjct: 121 KVLPQTLHWCGFSSECEMLWRSRSER 146


>gi|239746369 PREDICTED: hypothetical protein XP_002343699 [Homo
           sapiens]
          Length = 146

 Score =  316 bits (809), Expect = 5e-87
 Identities = 146/146 (100%), Positives = 146/146 (100%)

Query: 1   MAGGVGQAGSPFPSVSSSSSAPAVAGMPSSSHGGSDPGSGAHRGTPMASGCLRFAWRRSV 60
           MAGGVGQAGSPFPSVSSSSSAPAVAGMPSSSHGGSDPGSGAHRGTPMASGCLRFAWRRSV
Sbjct: 1   MAGGVGQAGSPFPSVSSSSSAPAVAGMPSSSHGGSDPGSGAHRGTPMASGCLRFAWRRSV 60

Query: 61  LASVKRSRQMGHWYGRSPECTRWWCASSPASRKRRGHSGQRKGRRPAWMLQCRRRWLERL 120
           LASVKRSRQMGHWYGRSPECTRWWCASSPASRKRRGHSGQRKGRRPAWMLQCRRRWLERL
Sbjct: 61  LASVKRSRQMGHWYGRSPECTRWWCASSPASRKRRGHSGQRKGRRPAWMLQCRRRWLERL 120

Query: 121 KVLPQTLHWCGFSSECEMLWRSRSER 146
           KVLPQTLHWCGFSSECEMLWRSRSER
Sbjct: 121 KVLPQTLHWCGFSSECEMLWRSRSER 146


>gi|239756458 PREDICTED: similar to ZNF668 protein [Homo sapiens]
          Length = 377

 Score = 49.3 bits (116), Expect = 1e-06
 Identities = 27/69 (39%), Positives = 30/69 (43%)

Query: 75  GRSPECTRWWCASSPASRKRRGHSGQRKGRRPAWMLQCRRRWLERLKVLPQTLHWCGFSS 134
           G SP CT WW   S   RK   HSG   G  P  +  CR R   + K  P     CGFS+
Sbjct: 35  GFSPVCTPWWRTRSEELRKLLSHSGHLCGFSPVCVRWCRARSEPQRKRFPHCPQLCGFSA 94

Query: 135 ECEMLWRSR 143
                WR R
Sbjct: 95  ARSRNWRRR 103



 Score = 34.7 bits (78), Expect = 0.029
 Identities = 30/85 (35%), Positives = 32/85 (37%), Gaps = 8/85 (9%)

Query: 37  PGSGAHRGTPMASGCLRFA------WRRSVLASVKRSRQMGHWYGRSPECTRWWCASSPA 90
           P +G H  TPM      F+      WR       K     GH  G SP C RW  A S  
Sbjct: 21  PLTGVH--TPMVQQEKGFSPVCTPWWRTRSEELRKLLSHSGHLCGFSPVCVRWCRARSEP 78

Query: 91  SRKRRGHSGQRKGRRPAWMLQCRRR 115
            RKR  H  Q  G   A     RRR
Sbjct: 79  QRKRFPHCPQLCGFSAARSRNWRRR 103


>gi|239750986 PREDICTED: hypothetical protein XP_002347637 [Homo
           sapiens]
          Length = 377

 Score = 49.3 bits (116), Expect = 1e-06
 Identities = 27/69 (39%), Positives = 30/69 (43%)

Query: 75  GRSPECTRWWCASSPASRKRRGHSGQRKGRRPAWMLQCRRRWLERLKVLPQTLHWCGFSS 134
           G SP CT WW   S   RK   HSG   G  P  +  CR R   + K  P     CGFS+
Sbjct: 35  GFSPVCTPWWRTRSEELRKLLSHSGHLCGFSPVCVRWCRARSEPQRKRFPHCPQLCGFSA 94

Query: 135 ECEMLWRSR 143
                WR R
Sbjct: 95  ARSRNWRRR 103



 Score = 34.7 bits (78), Expect = 0.029
 Identities = 30/85 (35%), Positives = 32/85 (37%), Gaps = 8/85 (9%)

Query: 37  PGSGAHRGTPMASGCLRFA------WRRSVLASVKRSRQMGHWYGRSPECTRWWCASSPA 90
           P +G H  TPM      F+      WR       K     GH  G SP C RW  A S  
Sbjct: 21  PLTGVH--TPMVQQEKGFSPVCTPWWRTRSEELRKLLSHSGHLCGFSPVCVRWCRARSEP 78

Query: 91  SRKRRGHSGQRKGRRPAWMLQCRRR 115
            RKR  H  Q  G   A     RRR
Sbjct: 79  QRKRFPHCPQLCGFSAARSRNWRRR 103


>gi|239745391 PREDICTED: hypothetical protein XP_002343487 [Homo
           sapiens]
          Length = 417

 Score = 49.3 bits (116), Expect = 1e-06
 Identities = 27/69 (39%), Positives = 30/69 (43%)

Query: 75  GRSPECTRWWCASSPASRKRRGHSGQRKGRRPAWMLQCRRRWLERLKVLPQTLHWCGFSS 134
           G SP CT WW   S   RK   HSG   G  P  +  CR R   + K  P     CGFS+
Sbjct: 75  GFSPVCTPWWRTRSEELRKLLSHSGHLCGFSPVCVRWCRARSEPQRKRFPHCPQLCGFSA 134

Query: 135 ECEMLWRSR 143
                WR R
Sbjct: 135 ARSRNWRRR 143



 Score = 34.7 bits (78), Expect = 0.029
 Identities = 30/85 (35%), Positives = 32/85 (37%), Gaps = 8/85 (9%)

Query: 37  PGSGAHRGTPMASGCLRFA------WRRSVLASVKRSRQMGHWYGRSPECTRWWCASSPA 90
           P +G H  TPM      F+      WR       K     GH  G SP C RW  A S  
Sbjct: 61  PLTGVH--TPMVQQEKGFSPVCTPWWRTRSEELRKLLSHSGHLCGFSPVCVRWCRARSEP 118

Query: 91  SRKRRGHSGQRKGRRPAWMLQCRRR 115
            RKR  H  Q  G   A     RRR
Sbjct: 119 QRKRFPHCPQLCGFSAARSRNWRRR 143


>gi|239757412 PREDICTED: hypothetical protein XP_002345272 [Homo
           sapiens]
          Length = 564

 Score = 44.7 bits (104), Expect = 3e-05
 Identities = 33/83 (39%), Positives = 36/83 (43%), Gaps = 21/83 (25%)

Query: 64  VKRSRQMGHWYGRSPECTRWWCA----------SSPA---SRKRRGHSGQRKGRRPAWML 110
           VK   Q G   GRSP CTRW C            +P      K R H  Q K RRP    
Sbjct: 395 VKVLGQSGQRKGRSPVCTRWCCRRLVLCVKLFPQTPQWDDHLKARPHWPQMKARRPV--- 451

Query: 111 QCRRRWL----ERLKVLPQTLHW 129
            C  RW+    ERLK L Q+ HW
Sbjct: 452 -CTLRWICSREERLKALGQSGHW 473



 Score = 37.0 bits (84), Expect = 0.006
 Identities = 24/61 (39%), Positives = 28/61 (45%), Gaps = 8/61 (13%)

Query: 70  MGHWYG-RSPECTRWWCASSPASRKRRGHSGQRKGRRPAWMLQCRRRWLERLKVLPQTLH 128
           +G W G RS      W        K  G SGQRKGR P     C RR +  +K+ PQT  
Sbjct: 379 LGGWRGPRSSHRLEEWV-------KVLGQSGQRKGRSPVCTRWCCRRLVLCVKLFPQTPQ 431

Query: 129 W 129
           W
Sbjct: 432 W 432


>gi|239746366 PREDICTED: hypothetical protein XP_002343738 [Homo
           sapiens]
          Length = 522

 Score = 40.4 bits (93), Expect = 5e-04
 Identities = 29/75 (38%), Positives = 32/75 (42%), Gaps = 14/75 (18%)

Query: 64  VKRSRQMGHWYGRSPECTRWWCASSPASRKRRGHSGQR------KGRRPAWMLQCRRRWL 117
           VK   Q G   GRSP CTRW C       K    + Q       K RRP     C R W+
Sbjct: 315 VKVLGQSGQRKGRSPVCTRWCCRRLEVCAKLLPQTPQAWGLSPVKARRPV----CTRWWM 370

Query: 118 ----ERLKVLPQTLH 128
               ERLK LP + H
Sbjct: 371 ASREERLKALPHSPH 385



 Score = 35.0 bits (79), Expect = 0.023
 Identities = 32/85 (37%), Positives = 34/85 (40%), Gaps = 15/85 (17%)

Query: 70  MGHWYG-RSPECTRWWCASSPASRKRRGHSGQRKGRRPAWMLQCRRRWLERLKVLPQTLH 128
           +G W G RS      W        K  G SGQRKGR P     C RR     K+LPQT  
Sbjct: 299 LGGWRGPRSSHRLEEWV-------KVLGQSGQRKGRSPVCTRWCCRRLEVCAKLLPQTPQ 351

Query: 129 WCGFS------SECEMLW-RSRSER 146
             G S        C   W  SR ER
Sbjct: 352 AWGLSPVKARRPVCTRWWMASREER 376



 Score = 34.3 bits (77), Expect = 0.039
 Identities = 29/84 (34%), Positives = 37/84 (44%), Gaps = 10/84 (11%)

Query: 8   AGSPFPSVSSS--SSAPAVAGMPSSSHGGSDPGSGAHRGTPMASGCLRFAWRRSVLAS-- 63
           AGSP   + S   +S+  V+     S G +  G G   G    +G L + WR    +   
Sbjct: 427 AGSPVAVLPSQRYTSSTVVSAAAKKSSGTTGGGGGGGAG---GAGGL-WGWRCRCSSRLE 482

Query: 64  --VKRSRQMGHWYGRSPECTRWWC 85
             VK   Q G   GRSP CTRW C
Sbjct: 483 EWVKVLGQSGQRKGRSPVCTRWCC 506



 Score = 33.5 bits (75), Expect = 0.066
 Identities = 20/47 (42%), Positives = 23/47 (48%), Gaps = 3/47 (6%)

Query: 83  WWCASSPASR---KRRGHSGQRKGRRPAWMLQCRRRWLERLKVLPQT 126
           W C  S       K  G SGQRKGR P     C RR +  +K+ PQT
Sbjct: 473 WRCRCSSRLEEWVKVLGQSGQRKGRSPVCTRWCCRRLVLCVKLFPQT 519


>gi|189571667 zinc finger protein 696 [Homo sapiens]
          Length = 374

 Score = 34.7 bits (78), Expect = 0.029
 Identities = 24/96 (25%), Positives = 43/96 (44%), Gaps = 1/96 (1%)

Query: 6   GQAGSPFPSVSSSSSAPAVAGMPSSSHGGSDPGSGAHRGTPMASGCLRFAWRRSVLASVK 65
           G    P  S  +   +   + +P ++  G++ G G+ +G P   G    +++ S  A+  
Sbjct: 85  GSPRGPVTSEKTGGQSGLESDVPPNAGPGAE-GGGSWKGRPFPCGACGRSFKCSSDAAKH 143

Query: 66  RSRQMGHWYGRSPECTRWWCASSPASRKRRGHSGQR 101
           RS   G       +C + +  SS   R +R HSG+R
Sbjct: 144 RSIHSGEKPYECSDCGKAFIHSSHVVRHQRAHSGER 179



 Score = 26.9 bits (58), Expect = 6.2
 Identities = 30/120 (25%), Positives = 40/120 (33%), Gaps = 31/120 (25%)

Query: 13  PSVSSSSSAPAVAGMPSSSHGGSDPGSGAHRGTPMASGCLRFAWR-----------RSVL 61
           PS S S+   A      ++  G+  G G   G P A G L                R  +
Sbjct: 32  PSGSRSAEVQAAQSTEPAAEAGAPEGEGHRGGPPRALGSLGLCENQEARERPGGSPRGPV 91

Query: 62  ASVKRSRQM-----------------GHWYGR---SPECTRWWCASSPASRKRRGHSGQR 101
            S K   Q                  G W GR      C R +  SS A++ R  HSG++
Sbjct: 92  TSEKTGGQSGLESDVPPNAGPGAEGGGSWKGRPFPCGACGRSFKCSSDAAKHRSIHSGEK 151


>gi|134244285 Notch homolog 3 [Homo sapiens]
          Length = 2321

 Score = 34.3 bits (77), Expect = 0.039
 Identities = 28/98 (28%), Positives = 34/98 (34%), Gaps = 5/98 (5%)

Query: 10   SPFPSVSSSSSAPAVAGMPSSSHGGSDPGSGAHRGTPMASGCLRFAWRRSVLASVKRSRQ 69
            +P   VS     P    +P   HG   P +GAH   P A   LR       L     S +
Sbjct: 2197 NPGTPVSPQERPPPYLAVPG--HGEEYPAAGAHSSPPKAR-FLRVPSEHPYLTPSPESPE 2253

Query: 70   MGHWYGRSPECTRWWCASSPASRKRRGHSGQRKGRRPA 107
              HW   SP     W  S+P+     G      G  PA
Sbjct: 2254 --HWASPSPPSLSDWSESTPSPATATGAMATTTGALPA 2289


>gi|239754229 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 513

 Score = 34.3 bits (77), Expect = 0.039
 Identities = 33/113 (29%), Positives = 43/113 (38%), Gaps = 4/113 (3%)

Query: 2   AGGVGQAGSPFPSVSSSSSAPAVAGMPSSSHGGSDPGSGAHRGTPMAS-GCLR---FAWR 57
           + G     SP P   S++SA    G  S S  G  P S     +P +S G  R   F WR
Sbjct: 63  SAGFSAGASPAPGADSTTSAGVSGGFSSCSGAGWGPSSAVLAPSPFSSLGSWRPCAFRWR 122

Query: 58  RSVLASVKRSRQMGHWYGRSPECTRWWCASSPASRKRRGHSGQRKGRRPAWML 110
             V  ++K   Q+      S E      AS   S   +  S   K R   W+L
Sbjct: 123 LRVPRNLKLFPQVSQASFCSCEAAPPAPASPSPSASLKSMSLVAKSRSRLWLL 175


>gi|116256460 zinc finger protein 775 [Homo sapiens]
          Length = 537

 Score = 33.5 bits (75), Expect = 0.066
 Identities = 34/147 (23%), Positives = 58/147 (39%), Gaps = 17/147 (11%)

Query: 3   GGVGQAGSPFPSVSSSSSAPAVAGMPSSSHGGSDPGSGAHRGTPMASGC-LRFAWRRSVL 61
           GG  ++GSP  +  +   A      P S+ G   P   +  G  +   C  RF+W  S+ 
Sbjct: 64  GGQEESGSPRWAPPTEQDAGLAGRAPGSASGPLSPSLSSGEGHFVCLDCGKRFSWWSSL- 122

Query: 62  ASVKRSRQMGHWYGRSPECTRWWCASSPASRKRRGHSGQRKGRRPAWMLQCRRRWLERLK 121
             + +    G       +C + +      +R +R H+G+    RP    +C RR+ ++  
Sbjct: 123 -KIHQRTHTGEKPYLCGKCGKSFSQKPNLARHQRHHTGE----RPFCCPECARRFSQKQH 177

Query: 122 VLPQ-------TLHWCGFSSECEMLWR 141
           +L           H C    ECE  +R
Sbjct: 178 LLKHQKTHSRPATHSC---PECERCFR 201


>gi|20162554 Kruppel-like factor 14 [Homo sapiens]
          Length = 323

 Score = 33.1 bits (74), Expect = 0.086
 Identities = 30/106 (28%), Positives = 44/106 (41%), Gaps = 20/106 (18%)

Query: 10  SPFPSVSSSSSAPAVAGMPSSSHGGSDPGSGAHRGTPMASGCL--------------RFA 55
           +P   ++ +S A AV    SSS   + P + A  G P ASG                +  
Sbjct: 124 TPCSELAPASGAAAVCAPESSSDAPAVPSAPAAPGAPAASGGFSGGALGAGPAPAADQAP 183

Query: 56  WRRSVLASVKRSRQMGHWYGRSPECTRWWCASSPASRKRRGHSGQR 101
            RRSV  + KR +         P CT+ +  SS     +R H+G+R
Sbjct: 184 RRRSVTPAAKRHQ------CPFPGCTKAYYKSSHLKSHQRTHTGER 223


>gi|31377595 zinc finger CCCH-type containing 18 [Homo sapiens]
          Length = 953

 Score = 33.1 bits (74), Expect = 0.086
 Identities = 27/98 (27%), Positives = 43/98 (43%), Gaps = 6/98 (6%)

Query: 16  SSSSSAPAVAGMPSSSHGGSDPGSGAHRGTPMASGCLRFAWRRSVLASVKRSRQMGHWYG 75
           +S+SSA A     SSS   S  GSG+ R    +S    ++ R S  +S   SR     + 
Sbjct: 544 TSASSASASNSSRSSSRSSSYSGSGSSRSRSRSSSYSSYSSRSSRHSSFSGSRSRSRSFS 603

Query: 76  RSPECTRWWCASSPASRKR------RGHSGQRKGRRPA 107
            SP  +       P+ R +       G +G++  ++PA
Sbjct: 604 SSPSPSPTPSPHRPSIRTKGEPAPPPGKAGEKSVKKPA 641


>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
          Length = 1466

 Score = 32.3 bits (72), Expect = 0.15
 Identities = 17/48 (35%), Positives = 21/48 (43%), Gaps = 2/48 (4%)

Query: 3   GGVGQAGSPFPSVSSSSSAPAVAGMPSSSHGGSDPGSGAHRGTPMASG 50
           GG G AG P P    ++  P + GMP    G   PG    +G P   G
Sbjct: 705 GGKGAAGPPGPP--GAAGTPGLQGMPGERGGLGSPGPKGDKGEPGGPG 750



 Score = 31.2 bits (69), Expect = 0.33
 Identities = 19/52 (36%), Positives = 21/52 (40%), Gaps = 4/52 (7%)

Query: 3   GGVGQAGSPFPS----VSSSSSAPAVAGMPSSSHGGSDPGSGAHRGTPMASG 50
           GG G AG P P        S   P  AG P +      PGS  + G P  SG
Sbjct: 846 GGSGPAGPPGPQGVKGERGSPGGPGAAGFPGARGLPGPPGSNGNPGPPGPSG 897



 Score = 29.3 bits (64), Expect = 1.2
 Identities = 16/49 (32%), Positives = 18/49 (36%), Gaps = 1/49 (2%)

Query: 3   GGVGQAGSPFP-SVSSSSSAPAVAGMPSSSHGGSDPGSGAHRGTPMASG 50
           G  G++G P P   S     P V G P        PG    RG P   G
Sbjct: 555 GSQGESGRPGPPGPSGPRGQPGVMGFPGPKGNDGAPGKNGERGGPGGPG 603



 Score = 28.5 bits (62), Expect = 2.1
 Identities = 19/61 (31%), Positives = 23/61 (37%), Gaps = 5/61 (8%)

Query: 3   GGVGQAGSPFPSVSSSSSAPAVAGMPSSSHGGSDPGS---GAHRGTPMASGCLRFAWRRS 59
           GG G+ G+P          P VAG P  S     PG       RG+P   G   F   R 
Sbjct: 822 GGKGERGAP--GEKGEGGPPGVAGPPGGSGPAGPPGPQGVKGERGSPGGPGAAGFPGARG 879

Query: 60  V 60
           +
Sbjct: 880 L 880



 Score = 27.3 bits (59), Expect = 4.7
 Identities = 15/50 (30%), Positives = 19/50 (38%), Gaps = 2/50 (4%)

Query: 1   MAGGVGQAGSPFPSVSSSSSAPAVAGMPSSSHGGSDPGSGAHRGTPMASG 50
           + G  G  GSP       +  P  AG P +     +PG    RG P   G
Sbjct: 787 LPGIAGPRGSP--GERGETGPPGPAGFPGAPGQNGEPGGKGERGAPGEKG 834


>gi|239757331 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 231

 Score = 32.3 bits (72), Expect = 0.15
 Identities = 39/111 (35%), Positives = 49/111 (44%), Gaps = 9/111 (8%)

Query: 11  PFPSVSSSSSAPAVAGMPSSSHGGSDPGS--GAHRGTPMASGCLRFAWR--RSVLASVKR 66
           PF S  S  S P+  G PSS  GG+ P S   A    P  S  LR   R  RS L  ++R
Sbjct: 69  PFSSGPSGPSGPSSPGGPSS--GGASPASEGSAMSPPPPRSSSLRSRSRRARSRLRLLRR 126

Query: 67  SRQMGHWYGRSPECTRWWCASSPASRKRRGHSGQRKGRRPAWMLQCRRRWL 117
            R       RS E  R   +S    R+R   S +R+ RR   + + R R L
Sbjct: 127 FRSRSLSLLRSLERLR---SSLSRLRERLRRSRERERRRSRSLSRSRLRSL 174


>gi|239751841 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 231

 Score = 32.3 bits (72), Expect = 0.15
 Identities = 39/111 (35%), Positives = 49/111 (44%), Gaps = 9/111 (8%)

Query: 11  PFPSVSSSSSAPAVAGMPSSSHGGSDPGS--GAHRGTPMASGCLRFAWR--RSVLASVKR 66
           PF S  S  S P+  G PSS  GG+ P S   A    P  S  LR   R  RS L  ++R
Sbjct: 69  PFSSGPSGPSGPSSPGGPSS--GGASPASEGSAMSPPPPRSSSLRSRSRRARSRLRLLRR 126

Query: 67  SRQMGHWYGRSPECTRWWCASSPASRKRRGHSGQRKGRRPAWMLQCRRRWL 117
            R       RS E  R   +S    R+R   S +R+ RR   + + R R L
Sbjct: 127 FRSRSLSLLRSLERLR---SSLSRLRERLRRSRERERRRSRSLSRSRLRSL 174


>gi|239748761 PREDICTED: hypothetical protein XP_002346789 [Homo
           sapiens]
          Length = 513

 Score = 32.3 bits (72), Expect = 0.15
 Identities = 32/105 (30%), Positives = 41/105 (39%), Gaps = 4/105 (3%)

Query: 10  SPFPSVSSSSSAPAVAGMPSSSHGGSDPGSGAHRGTPMAS-GCLR---FAWRRSVLASVK 65
           SP P   S++SA    G  S S  G  P S     +P +S G  R   F WR  V  ++K
Sbjct: 71  SPAPGADSTTSAGVSGGFSSCSGAGWGPSSAVLAPSPFSSLGSWRPCAFRWRLRVPRNLK 130

Query: 66  RSRQMGHWYGRSPECTRWWCASSPASRKRRGHSGQRKGRRPAWML 110
              Q+      S E      AS   S   +  S   K R   W+L
Sbjct: 131 LFPQVSQASFCSCEAAPPAPASPSPSASLKSMSLVAKSRSRLWLL 175


>gi|239746332 PREDICTED: hypothetical protein XP_002343733 [Homo
           sapiens]
          Length = 231

 Score = 32.3 bits (72), Expect = 0.15
 Identities = 39/111 (35%), Positives = 49/111 (44%), Gaps = 9/111 (8%)

Query: 11  PFPSVSSSSSAPAVAGMPSSSHGGSDPGS--GAHRGTPMASGCLRFAWR--RSVLASVKR 66
           PF S  S  S P+  G PSS  GG+ P S   A    P  S  LR   R  RS L  ++R
Sbjct: 69  PFSSGPSGPSGPSSPGGPSS--GGASPASEGSAMSPPPPRSSSLRSRSRRARSRLRLLRR 126

Query: 67  SRQMGHWYGRSPECTRWWCASSPASRKRRGHSGQRKGRRPAWMLQCRRRWL 117
            R       RS E  R   +S    R+R   S +R+ RR   + + R R L
Sbjct: 127 FRSRSLSLLRSLERLR---SSLSRLRERLRRSRERERRRSRSLSRSRLRSL 174


>gi|239742806 PREDICTED: hypothetical protein XP_002342653 [Homo
           sapiens]
          Length = 513

 Score = 32.3 bits (72), Expect = 0.15
 Identities = 32/105 (30%), Positives = 41/105 (39%), Gaps = 4/105 (3%)

Query: 10  SPFPSVSSSSSAPAVAGMPSSSHGGSDPGSGAHRGTPMAS-GCLR---FAWRRSVLASVK 65
           SP P   S++SA    G  S S  G  P S     +P +S G  R   F WR  V  ++K
Sbjct: 71  SPAPGADSTTSAGVSGGFSSCSGAGWGPSSAVLAPSPFSSLGSWRPCAFRWRLRVPRNLK 130

Query: 66  RSRQMGHWYGRSPECTRWWCASSPASRKRRGHSGQRKGRRPAWML 110
              Q+      S E      AS   S   +  S   K R   W+L
Sbjct: 131 LFPQVSQASFCSCEAAPPAPASPSPSASLKSMSLVAKSRSRLWLL 175


>gi|157739932 mesogenin 1 [Homo sapiens]
          Length = 193

 Score = 32.0 bits (71), Expect = 0.19
 Identities = 21/46 (45%), Positives = 26/46 (56%), Gaps = 3/46 (6%)

Query: 7  QAGSPFPSVSSSSSAP--AVAGMPSSSHGGSDPGSGAHRGTPMASG 50
          Q+ SP PS+ S SS+P  AVAG+P   HGG+  G         ASG
Sbjct: 45 QSLSPAPSLESYSSSPCPAVAGLP-CEHGGASSGGSEGCSVGGASG 89


>gi|5031759 homeobox A11 [Homo sapiens]
          Length = 313

 Score = 32.0 bits (71), Expect = 0.19
 Identities = 31/113 (27%), Positives = 49/113 (43%), Gaps = 20/113 (17%)

Query: 7   QAGSPFPSVSSSSSAPAVAGMPSSSHGGSDPGSGAHRGTPMASGCLRFAWRRSVLASVKR 66
           + G P  + +S+++A A  G P++S   SD G G         GC     R +  A+ ++
Sbjct: 166 EKGPPAATATSAAAAAAATGAPATS--SSDSGGG--------GGC-----RETAAAAEEK 210

Query: 67  SRQMGHWYGRSPECTRWWCASSPASRKRRGHSGQRKGRRPAWMLQCRRRWLER 119
            R+       SPE      +S     K  G SGQR  ++     + + R LER
Sbjct: 211 ERRRRPESSSSPE-----SSSGHTEDKAGGSSGQRTRKKRCPYTKYQIRELER 258


>gi|239753984 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 162

 Score = 32.0 bits (71), Expect = 0.19
 Identities = 26/96 (27%), Positives = 42/96 (43%), Gaps = 11/96 (11%)

Query: 6   GQAGSPFPSVSSSSSAPAVAGMPSSSHGGSDPGSGAHRGTPMASGCLRFAWRRSVLASVK 65
           G AGS     + +S+APA  G P      +  GSGA   +P  +           L + +
Sbjct: 17  GAAGSALMEAAPNSAAPASTGRPR-----AHVGSGADDPSPNGAALRLSVREAGALGAPE 71

Query: 66  RSRQMGHWYGR---SPECTRWWCASSPASRKRRGHS 98
            + Q   W G+   + +C R + A +P +   +GHS
Sbjct: 72  LAEQ---WSGKGRGTRDCNRHFQALAPRAWSPQGHS 104


>gi|169168504 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 162

 Score = 32.0 bits (71), Expect = 0.19
 Identities = 26/96 (27%), Positives = 42/96 (43%), Gaps = 11/96 (11%)

Query: 6   GQAGSPFPSVSSSSSAPAVAGMPSSSHGGSDPGSGAHRGTPMASGCLRFAWRRSVLASVK 65
           G AGS     + +S+APA  G P      +  GSGA   +P  +           L + +
Sbjct: 17  GAAGSALMEAAPNSAAPASTGRPR-----AHVGSGADDPSPNGAALRLSVREAGALGAPE 71

Query: 66  RSRQMGHWYGR---SPECTRWWCASSPASRKRRGHS 98
            + Q   W G+   + +C R + A +P +   +GHS
Sbjct: 72  LAEQ---WSGKGRGTRDCNRHFQALAPRAWSPQGHS 104


>gi|169167589 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 162

 Score = 32.0 bits (71), Expect = 0.19
 Identities = 26/96 (27%), Positives = 42/96 (43%), Gaps = 11/96 (11%)

Query: 6   GQAGSPFPSVSSSSSAPAVAGMPSSSHGGSDPGSGAHRGTPMASGCLRFAWRRSVLASVK 65
           G AGS     + +S+APA  G P      +  GSGA   +P  +           L + +
Sbjct: 17  GAAGSALMEAAPNSAAPASTGRPR-----AHVGSGADDPSPNGAALRLSVREAGALGAPE 71

Query: 66  RSRQMGHWYGR---SPECTRWWCASSPASRKRRGHS 98
            + Q   W G+   + +C R + A +P +   +GHS
Sbjct: 72  LAEQ---WSGKGRGTRDCNRHFQALAPRAWSPQGHS 104


>gi|40538799 ataxin-1 ubiquitin-like interacting protein [Homo
           sapiens]
          Length = 601

 Score = 32.0 bits (71), Expect = 0.19
 Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 2/40 (5%)

Query: 13  PSVSSSSSAPAVAGMPSSSHGGSDPGSGAHRGTPMASGCL 52
           PS S S+S+ A +G   SS GG  PG+G   G+P A+  +
Sbjct: 121 PSTSGSASSDAGSGSRRSSGGGPSPGAG--EGSPSATASI 158


>gi|239751877 PREDICTED: hypothetical protein XP_002348035 [Homo
           sapiens]
          Length = 944

 Score = 31.6 bits (70), Expect = 0.25
 Identities = 16/33 (48%), Positives = 16/33 (48%)

Query: 64  VKRSRQMGHWYGRSPECTRWWCASSPASRKRRG 96
           VK   Q G   GRSP CTRW C    A R   G
Sbjct: 395 VKVLGQSGQRKGRSPVCTRWCCRRLEARRVAEG 427



 Score = 27.3 bits (59), Expect = 4.7
 Identities = 19/47 (40%), Positives = 20/47 (42%), Gaps = 8/47 (17%)

Query: 70  MGHWYG-RSPECTRWWCASSPASRKRRGHSGQRKGRRPAWMLQCRRR 115
           +G W G RS      W        K  G SGQRKGR P     C RR
Sbjct: 379 LGGWRGPRSSHRLEEWV-------KVLGQSGQRKGRSPVCTRWCCRR 418



 Score = 26.9 bits (58), Expect = 6.2
 Identities = 15/32 (46%), Positives = 17/32 (53%), Gaps = 8/32 (25%)

Query: 102 KGRRPAWMLQCRRRWL----ERLKVLPQTLHW 129
           K RRP     C  RW+    ERLK L Q+ HW
Sbjct: 826 KARRPV----CTLRWICSREERLKALGQSGHW 853


>gi|40807452 peroxisome proliferator-activated receptor gamma,
            coactivator-related 1 [Homo sapiens]
          Length = 1664

 Score = 31.2 bits (69), Expect = 0.33
 Identities = 29/103 (28%), Positives = 40/103 (38%), Gaps = 6/103 (5%)

Query: 3    GGVGQAGSPFPSVSSSSSAPAVAGMPSSSHGGSDPGSGAHRGTPMASGCLRFAWRRSVLA 62
            G  G+ G    SVSS S+  + A   SSS   S          P         WRRS  +
Sbjct: 1418 GWQGRRGRNSRSVSSGSNRTSEASSSSSSSSSSSRSRSRSLSPPHKR------WRRSSCS 1471

Query: 63   SVKRSRQMGHWYGRSPECTRWWCASSPASRKRRGHSGQRKGRR 105
            S  RSR+       S   +    +SS +  + R  S +R+  R
Sbjct: 1472 SSGRSRRCSSSSSSSSSSSSSSSSSSSSRSRSRSPSPRRRSDR 1514


>gi|33356174 pinin, desmosome associated protein [Homo sapiens]
          Length = 717

 Score = 31.2 bits (69), Expect = 0.33
 Identities = 26/92 (28%), Positives = 39/92 (42%), Gaps = 6/92 (6%)

Query: 14  SVSSSSSAPAVAGMPSSSHGGSDPGSGAHRGTPMASGCLRFAWRRSVLASVKRSRQMGHW 73
           S SSSSS+ + +   SSS G S   S +   +  +    R +   +  +S  RSR  G  
Sbjct: 580 SSSSSSSSTSSSSGSSSSSGSSSSRSSSSSSSSTSGSSSRDSSSSTSSSSESRSRSRGRG 639

Query: 74  YGRSPECTRWWCASSPASRKRRGHSGQRKGRR 105
           + R  +  R         RKRR  SG  +  +
Sbjct: 640 HNRDRKHRR------SVDRKRRDTSGLERSHK 665


>gi|194239638 zinc finger protein 449 [Homo sapiens]
          Length = 518

 Score = 31.2 bits (69), Expect = 0.33
 Identities = 26/88 (29%), Positives = 37/88 (42%), Gaps = 9/88 (10%)

Query: 32  HGGSDPGSGAHRGTPMASGCLRFAWRRSVLASVKRSRQMGHWYGRSPECTRWWCASSPAS 91
           H    PG   HR  P    C     R+S L   +R    G    + PEC + +  SS   
Sbjct: 313 HKKKSPGEKPHR-CPQCGKCFA---RKSQLTGHQRIHS-GEEPHKCPECGKRFLRSSDLY 367

Query: 92  RKRRGHSGQRKGRRPAWMLQCRRRWLER 119
           R +R H+G+    RP     C++R+  R
Sbjct: 368 RHQRLHTGE----RPYECTVCKKRFTRR 391


>gi|126090909 engrailed homeobox 1 [Homo sapiens]
          Length = 392

 Score = 30.8 bits (68), Expect = 0.43
 Identities = 34/134 (25%), Positives = 57/134 (42%), Gaps = 21/134 (15%)

Query: 4   GVGQAGSPFPSVSS-----SSSAPAVAGMPSSSHGGSDPGSGAHRGTPMASG-------- 50
           G  +AG+P  + ++     +++A A A  PS + GG   GSG   G+P A G        
Sbjct: 191 GASKAGNPAAAAAAAAAAVAAAAAAAAAKPSDTGGG---GSGGGAGSPGAQGTKYPEHGN 247

Query: 51  -CLRFAWRRSVLASVKRSRQMGHWYGRSPECTRW--WCASSPASRKRRGHSGQRKGRRPA 107
             +      +    VK   Q    +     CTR+    +S P +RK +    +++ +RP 
Sbjct: 248 PAILLMGSANGGPVVKTDSQQPLVWPAWVYCTRYSDRPSSGPRTRKLKKKKNEKEDKRPR 307

Query: 108 WMLQCRRRWLERLK 121
                 +  L+RLK
Sbjct: 308 TAFTAEQ--LQRLK 319


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.320    0.130    0.450 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,083,712
Number of Sequences: 37866
Number of extensions: 374182
Number of successful extensions: 3480
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 129
Number of HSP's that attempted gapping in prelim test: 3070
Number of HSP's gapped (non-prelim): 500
length of query: 146
length of database: 18,247,518
effective HSP length: 92
effective length of query: 54
effective length of database: 14,763,846
effective search space: 797247684
effective search space used: 797247684
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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