Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 118582269
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|118582269 splicing factor, arginine/serine-rich 1 isoform 2
[Homo sapiens]
(201 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|118582269 splicing factor, arginine/serine-rich 1 isoform 2 [... 429 e-121
gi|5902076 splicing factor, arginine/serine-rich 1 isoform 1 [Ho... 392 e-109
gi|4506903 splicing factor, arginine/serine-rich 9 [Homo sapiens] 259 1e-69
gi|21361282 splicing factor, arginine/serine-rich 4 [Homo sapiens] 136 1e-32
gi|86991440 splicing factor, arginine/serine-rich 5 [Homo sapiens] 133 1e-31
gi|86991438 splicing factor, arginine/serine-rich 5 [Homo sapiens] 133 1e-31
gi|20127499 arginine/serine-rich splicing factor 6 [Homo sapiens] 131 3e-31
gi|4506901 splicing factor, arginine/serine-rich 3 [Homo sapiens] 75 3e-14
gi|72534660 splicing factor, arginine/serine-rich 7 [Homo sapiens] 65 3e-11
gi|242117971 RNA binding motif protein, X-linked-like 1 [Homo sa... 62 3e-10
gi|21361809 RNA binding motif protein, X-linked-like 1 [Homo sap... 62 3e-10
gi|13899354 RNA binding motif protein 4B [Homo sapiens] 62 3e-10
gi|15055543 splicing factor, arginine/serine-rich 2B [Homo sapiens] 61 6e-10
gi|56699409 RNA binding motif protein, X-linked [Homo sapiens] 61 7e-10
gi|93277122 RNA binding motif protein 4 [Homo sapiens] 60 1e-09
gi|4502847 cold inducible RNA binding protein [Homo sapiens] 57 1e-08
gi|47271443 splicing factor, arginine/serine-rich 2 [Homo sapiens] 56 2e-08
gi|9558733 transformer-2 alpha [Homo sapiens] 56 2e-08
gi|239752336 PREDICTED: similar to RNA binding motif protein, X-... 54 1e-07
gi|239746849 PREDICTED: hypothetical protein XP_002343863 [Homo ... 54 1e-07
gi|34740329 heterogeneous nuclear ribonucleoprotein A3 [Homo sap... 52 4e-07
gi|5031703 Ras-GTPase-activating protein SH3-domain-binding prot... 52 4e-07
gi|38327552 Ras-GTPase-activating protein SH3-domain-binding pro... 52 4e-07
gi|253970504 Ewing sarcoma breakpoint region 1 isoform 4 [Homo s... 51 6e-07
gi|253970502 Ewing sarcoma breakpoint region 1 isoform 3 [Homo s... 51 6e-07
gi|253970500 Ewing sarcoma breakpoint region 1 isoform 1 [Homo s... 51 6e-07
gi|4885225 Ewing sarcoma breakpoint region 1 isoform 2 [Homo sap... 51 6e-07
gi|4759098 splicing factor, arginine/serine-rich 10 [Homo sapiens] 51 6e-07
gi|5730079 FUS interacting protein (serine-arginine rich) 1 isof... 51 8e-07
gi|169161980 PREDICTED: similar to FUS interacting protein (seri... 51 8e-07
>gi|118582269 splicing factor, arginine/serine-rich 1 isoform 2
[Homo sapiens]
Length = 201
Score = 429 bits (1104), Expect = e-121
Identities = 201/201 (100%), Positives = 201/201 (100%)
Query: 1 MSGGGVIRGPAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVE 60
MSGGGVIRGPAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVE
Sbjct: 1 MSGGGVIRGPAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVE 60
Query: 61 FEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSE 120
FEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSE
Sbjct: 61 FEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSE 120
Query: 121 NRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTKF 180
NRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTKF
Sbjct: 121 NRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTKF 180
Query: 181 RSHEVGYTRILFFDQNWIQWS 201
RSHEVGYTRILFFDQNWIQWS
Sbjct: 181 RSHEVGYTRILFFDQNWIQWS 201
>gi|5902076 splicing factor, arginine/serine-rich 1 isoform 1 [Homo
sapiens]
Length = 248
Score = 392 bits (1006), Expect = e-109
Identities = 186/192 (96%), Positives = 187/192 (97%), Gaps = 2/192 (1%)
Query: 1 MSGGGVIRGPAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVE 60
MSGGGVIRGPAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVE
Sbjct: 1 MSGGGVIRGPAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVE 60
Query: 61 FEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSE 120
FEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSE
Sbjct: 61 FEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSE 120
Query: 121 NRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTKF 180
NRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTKF
Sbjct: 121 NRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTKF 180
Query: 181 RSH--EVGYTRI 190
RSH E Y R+
Sbjct: 181 RSHEGETAYIRV 192
>gi|4506903 splicing factor, arginine/serine-rich 9 [Homo sapiens]
Length = 221
Score = 259 bits (662), Expect = 1e-69
Identities = 133/193 (68%), Positives = 151/193 (78%), Gaps = 14/193 (7%)
Query: 1 MSGGGVIRGPAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVE 60
MSG RG G D RIYVGNLP D+R KD+ED+FYKYG IR+I+LKNR G PFAFV
Sbjct: 1 MSGWADERG--GEGDGRIYVGNLPTDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVR 58
Query: 61 FEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRG-RYGPPSRRS 119
FEDPRDAEDA+YGR+GYDY RLRVEFPR+ GG GG PRG R GPP+RRS
Sbjct: 59 FEDPRDAEDAIYGRNGYDYGQCRLRVEFPRTY---------GGRGGWPRGGRNGPPTRRS 109
Query: 120 ENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTK 179
+ RV+VSGLPPSGSWQDLKDHMREAGDVCYADV +DG G+VE++RKEDM YA+RKLD+TK
Sbjct: 110 DFRVLVSGLPPSGSWQDLKDHMREAGDVCYADVQKDGVGMVEYLRKEDMEYALRKLDDTK 169
Query: 180 FRSH--EVGYTRI 190
FRSH E Y R+
Sbjct: 170 FRSHEGETSYIRV 182
>gi|21361282 splicing factor, arginine/serine-rich 4 [Homo sapiens]
Length = 494
Score = 136 bits (343), Expect = 1e-32
Identities = 79/174 (45%), Positives = 104/174 (59%), Gaps = 11/174 (6%)
Query: 17 RIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDG 76
R+Y+G L R +D+E F YG I ++DLKN G FVEF+D RDA+DAVY +G
Sbjct: 3 RVYIGRLSYQARERDVERFFKGYGKILEVDLKNGYG-----FVEFDDLRDADDAVYELNG 57
Query: 77 YDYDGYRLRVEFPRSGRGTGRGGGGGGGGG---APRGRYGPPSRRSENRVVVSGLPPSGS 133
D G R+ VE R R G G G G G + R +YGPP+R +E R++V L S
Sbjct: 58 KDLCGERVIVEHARGPRRDGSYGSGRSGYGYRRSGRDKYGPPTR-TEYRLIVENLSSRCS 116
Query: 134 WQDLKDHMREAGDVCYADVY--RDGTGVVEFVRKEDMTYAVRKLDNTKFRSHEV 185
WQDLKD+MR+AG+V YAD + R GV+EFV DM A+ KLD T+ ++
Sbjct: 117 WQDLKDYMRQAGEVTYADAHKGRKNEGVIEFVSYSDMKRALEKLDGTEVNGRKI 170
>gi|86991440 splicing factor, arginine/serine-rich 5 [Homo sapiens]
Length = 272
Score = 133 bits (334), Expect = 1e-31
Identities = 78/176 (44%), Positives = 99/176 (56%), Gaps = 11/176 (6%)
Query: 16 CRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRD 75
CR+++G L P R KD+E F YG IRDIDLK RG F FVEFEDPRDA+DAVY D
Sbjct: 4 CRVFIGRLNPAAREKDVERFFKGYGRIRDIDLK--RG---FGFVEFEDPRDADDAVYELD 58
Query: 76 GYDYDGYRLRVEFPRS----GRGTGRGGGGGGGGGAPRGRYGPPSRRSENRVVVSGLPPS 131
G + R+ +E R+ GRG GR R P R+ENR++V L
Sbjct: 59 GKELCSERVTIEHARARSRGGRGRGRYSDRFSSRRPRNDRRNAPPVRTENRLIVENLSSR 118
Query: 132 GSWQDLKDHMREAGDVCYADVYRD--GTGVVEFVRKEDMTYAVRKLDNTKFRSHEV 185
SWQDLKD MR+AG+V +AD +R GVVEF D+ A+ KL + ++
Sbjct: 119 VSWQDLKDFMRQAGEVTFADAHRPKLNEGVVEFASYGDLKNAIEKLSGKEINGRKI 174
>gi|86991438 splicing factor, arginine/serine-rich 5 [Homo sapiens]
Length = 272
Score = 133 bits (334), Expect = 1e-31
Identities = 78/176 (44%), Positives = 99/176 (56%), Gaps = 11/176 (6%)
Query: 16 CRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRD 75
CR+++G L P R KD+E F YG IRDIDLK RG F FVEFEDPRDA+DAVY D
Sbjct: 4 CRVFIGRLNPAAREKDVERFFKGYGRIRDIDLK--RG---FGFVEFEDPRDADDAVYELD 58
Query: 76 GYDYDGYRLRVEFPRS----GRGTGRGGGGGGGGGAPRGRYGPPSRRSENRVVVSGLPPS 131
G + R+ +E R+ GRG GR R P R+ENR++V L
Sbjct: 59 GKELCSERVTIEHARARSRGGRGRGRYSDRFSSRRPRNDRRNAPPVRTENRLIVENLSSR 118
Query: 132 GSWQDLKDHMREAGDVCYADVYRD--GTGVVEFVRKEDMTYAVRKLDNTKFRSHEV 185
SWQDLKD MR+AG+V +AD +R GVVEF D+ A+ KL + ++
Sbjct: 119 VSWQDLKDFMRQAGEVTFADAHRPKLNEGVVEFASYGDLKNAIEKLSGKEINGRKI 174
>gi|20127499 arginine/serine-rich splicing factor 6 [Homo sapiens]
Length = 344
Score = 131 bits (330), Expect = 3e-31
Identities = 79/180 (43%), Positives = 105/180 (58%), Gaps = 17/180 (9%)
Query: 17 RIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDG 76
R+Y+G L ++R KDI+ F YG + ++DLKN G FVEFED RDA+DAVY +G
Sbjct: 3 RVYIGRLSYNVREKDIQRFFSGYGRLLEVDLKNGYG-----FVEFEDSRDADDAVYELNG 57
Query: 77 YDYDGYRLRVEFPRSGR----GTGRGGGGGGGGGAPR-----GRYGPPSRRSENRVVVSG 127
+ G R+ VE R R G G GGGG + R +YGPP R +E R++V
Sbjct: 58 KELCGERVIVEHARGPRRDRDGYSYGSRSGGGGYSSRRTSGRDKYGPPVR-TEYRLIVEN 116
Query: 128 LPPSGSWQDLKDHMREAGDVCYADVYRDGT--GVVEFVRKEDMTYAVRKLDNTKFRSHEV 185
L SWQDLKD MR+AG+V YAD +++ T GV+EF DM A+ KLD T+ +
Sbjct: 117 LSSRCSWQDLKDFMRQAGEVTYADAHKERTNEGVIEFRSYSDMKRALDKLDGTEINGRNI 176
>gi|4506901 splicing factor, arginine/serine-rich 3 [Homo sapiens]
Length = 164
Score = 75.5 bits (184), Expect = 3e-14
Identities = 47/112 (41%), Positives = 58/112 (51%), Gaps = 6/112 (5%)
Query: 15 DCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGR 74
DC++YVGNL + ++E F YG +R + + R P FAFVEFEDPRDA DAV
Sbjct: 9 DCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVA--RNPPGFAFVEFEDPRDAADAVREL 66
Query: 75 DGYDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRY----GPPSRRSENR 122
DG G R+RVE + + G G PR Y PP RRS R
Sbjct: 67 DGRTLCGCRVRVELSNGEKRSRNRGPPPSWGRRPRDDYRRRSPPPRRRSPRR 118
>gi|72534660 splicing factor, arginine/serine-rich 7 [Homo
sapiens]
Length = 238
Score = 65.5 bits (158), Expect = 3e-11
Identities = 39/83 (46%), Positives = 48/83 (57%), Gaps = 6/83 (7%)
Query: 15 DCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGR 74
+ ++YVGNL ++E F YG +R + + R P FAFVEFEDPRDAEDAV G
Sbjct: 10 ETKVYVGNLGTGAGKGELERAFSYYGPLRTVWIA--RNPPGFAFVEFEDPRDAEDAVRGL 67
Query: 75 DGYDYDGYRLRVE----FPRSGR 93
DG G R+RVE PR R
Sbjct: 68 DGKVICGSRVRVELSTGMPRRSR 90
>gi|242117971 RNA binding motif protein, X-linked-like 1 [Homo
sapiens]
Length = 390
Score = 62.4 bits (150), Expect = 3e-10
Identities = 44/122 (36%), Positives = 56/122 (45%), Gaps = 26/122 (21%)
Query: 17 RIYVGNLPPDIRTKDIEDVFYKYGAI------RDIDLKNRRGGPPFAFVEFEDPRDAEDA 70
++++G L + K +E VF KYG I +D + RG FAFV FE P DA+DA
Sbjct: 9 KLFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRG---FAFVTFESPADAKDA 65
Query: 71 VYGRDGYDYDGYRLRVEF---------------PRSGRGTGRGGGGGGGGGAPRGRYGPP 115
+G DG ++VE P RG RG G G GG G GPP
Sbjct: 66 ARDMNGKSLDGKAIKVEQATKPSFERGRHGPPPPPRSRGPPRGFGAGRGGSG--GTRGPP 123
Query: 116 SR 117
SR
Sbjct: 124 SR 125
>gi|21361809 RNA binding motif protein, X-linked-like 1 [Homo
sapiens]
Length = 390
Score = 62.4 bits (150), Expect = 3e-10
Identities = 44/122 (36%), Positives = 56/122 (45%), Gaps = 26/122 (21%)
Query: 17 RIYVGNLPPDIRTKDIEDVFYKYGAI------RDIDLKNRRGGPPFAFVEFEDPRDAEDA 70
++++G L + K +E VF KYG I +D + RG FAFV FE P DA+DA
Sbjct: 9 KLFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRG---FAFVTFESPADAKDA 65
Query: 71 VYGRDGYDYDGYRLRVEF---------------PRSGRGTGRGGGGGGGGGAPRGRYGPP 115
+G DG ++VE P RG RG G G GG G GPP
Sbjct: 66 ARDMNGKSLDGKAIKVEQATKPSFERGRHGPPPPPRSRGPPRGFGAGRGGSG--GTRGPP 123
Query: 116 SR 117
SR
Sbjct: 124 SR 125
>gi|13899354 RNA binding motif protein 4B [Homo sapiens]
Length = 359
Score = 62.0 bits (149), Expect = 3e-10
Identities = 43/166 (25%), Positives = 74/166 (44%), Gaps = 32/166 (19%)
Query: 17 RIYVGNLPPDIRTKDIEDVFYKYGAIRDID-LKNRRGGPPFAFVEFEDPRDAEDAVYGRD 75
++++GNLP + ++I +F +YG + + D +KN + FV ED AEDA+
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKN------YGFVHIEDKTAAEDAIRNLH 56
Query: 76 GYDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSENRVVVSGLPPSGSWQ 135
Y G + VE ++ ++ ++ V + P+ + Q
Sbjct: 57 HYKLHGVNINVEASKN------------------------KSKASTKLHVGNISPTCTNQ 92
Query: 136 DLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTKFR 181
+L+ E G V D+ +D V R ED A+R LDNT+F+
Sbjct: 93 ELRAKFEEYGPVIECDIVKD-YAFVHMERAEDAVEAIRGLDNTEFQ 137
>gi|15055543 splicing factor, arginine/serine-rich 2B [Homo sapiens]
Length = 282
Score = 61.2 bits (147), Expect = 6e-10
Identities = 42/114 (36%), Positives = 51/114 (44%), Gaps = 11/114 (9%)
Query: 20 VGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDG 76
V NL + VF KYG + D+ + + FAFV F D RDA+DA DG
Sbjct: 18 VDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDG 77
Query: 77 YDYDGYRLRV--------EFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSENR 122
+ DG LRV + PRS +G RG GGG G YG SR R
Sbjct: 78 AELDGRELRVQVARYGRRDLPRSRQGEPRGRSRGGGYGRRSRSYGRRSRSPRRR 131
>gi|56699409 RNA binding motif protein, X-linked [Homo sapiens]
Length = 391
Score = 60.8 bits (146), Expect = 7e-10
Identities = 44/122 (36%), Positives = 56/122 (45%), Gaps = 26/122 (21%)
Query: 17 RIYVGNLPPDIRTKDIEDVFYKYGAI------RDIDLKNRRGGPPFAFVEFEDPRDAEDA 70
++++G L + K +E VF KYG I +D + RG FAFV FE P DA+DA
Sbjct: 9 KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRG---FAFVTFESPADAKDA 65
Query: 71 VYGRDGYDYDGYRLRVEF---------------PRSGRGTGRGGGGGGGGGAPRGRYGPP 115
+G DG ++VE P RG RG GG GG G GPP
Sbjct: 66 ARDMNGKSLDGKAIKVEQATKPSFESGRRGPPPPPRSRGPPRGLRGGRGGSG--GTRGPP 123
Query: 116 SR 117
SR
Sbjct: 124 SR 125
Score = 27.3 bits (59), Expect = 9.0
Identities = 25/79 (31%), Positives = 30/79 (37%), Gaps = 27/79 (34%)
Query: 39 YGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGTGRG 98
Y + RD + RG PP + PRD+ + S RG RG
Sbjct: 335 YSSGRDRVGRQERGLPPSMERGYPPPRDS--------------------YSSSSRGAPRG 374
Query: 99 GGGGG-----GGGAPRGRY 112
GG GG GGG R RY
Sbjct: 375 GGRGGSRSDRGGG--RSRY 391
>gi|93277122 RNA binding motif protein 4 [Homo sapiens]
Length = 364
Score = 60.5 bits (145), Expect = 1e-09
Identities = 42/166 (25%), Positives = 74/166 (44%), Gaps = 32/166 (19%)
Query: 17 RIYVGNLPPDIRTKDIEDVFYKYGAIRDID-LKNRRGGPPFAFVEFEDPRDAEDAVYGRD 75
++++GNLP + ++I +F +YG + + D +KN + FV ED AEDA+
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKN------YGFVHIEDKTAAEDAIRNLH 56
Query: 76 GYDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSENRVVVSGLPPSGSWQ 135
Y G + VE ++ ++ ++ V + P+ + +
Sbjct: 57 HYKLHGVNINVEASKN------------------------KSKTSTKLHVGNISPTCTNK 92
Query: 136 DLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTKFR 181
+L+ E G V D+ +D V R ED A+R LDNT+F+
Sbjct: 93 ELRAKFEEYGPVIECDIVKD-YAFVHMERAEDAVEAIRGLDNTEFQ 137
>gi|4502847 cold inducible RNA binding protein [Homo sapiens]
Length = 172
Score = 57.0 bits (136), Expect = 1e-08
Identities = 38/110 (34%), Positives = 56/110 (50%), Gaps = 12/110 (10%)
Query: 13 NNDCRIYVGNLPPDIRTKDIEDVFYKYGAI------RDIDLKNRRGGPPFAFVEFEDPRD 66
+++ +++VG L D + +E VF KYG I +D + + RG F FV FE+ D
Sbjct: 3 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRG---FGFVTFENIDD 59
Query: 67 AEDAVYGRDGYDYDGYRLRVE---FPRSGRGTGRGGGGGGGGGAPRGRYG 113
A+DA+ +G DG ++RV+ R G GG GG G RG G
Sbjct: 60 AKDAMMAMNGKSVDGRQIRVDQAGKSSDNRSRGYRGGSAGGRGFFRGGRG 109
>gi|47271443 splicing factor, arginine/serine-rich 2 [Homo sapiens]
Length = 221
Score = 56.2 bits (134), Expect = 2e-08
Identities = 46/117 (39%), Positives = 53/117 (45%), Gaps = 17/117 (14%)
Query: 20 VGNLPPDIRTKDIEDVFYKYGAIRDIDL------KNRRGGPPFAFVEFEDPRDAEDAVYG 73
V NL + VF KYG + D+ + K RG FAFV F D RDAEDA+
Sbjct: 18 VDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRG---FAFVRFHDKRDAEDAMDA 74
Query: 74 RDGYDYDGYRLRVEFPRSGRGT----GRGGGG----GGGGGAPRGRYGPPSRRSENR 122
DG DG LRV+ R GR R G GGGG R R RRS +R
Sbjct: 75 MDGAVLDGRELRVQMARYGRPPDSHHSRRGPPPRRYGGGGYGRRSRSPRRRRRSRSR 131
>gi|9558733 transformer-2 alpha [Homo sapiens]
Length = 282
Score = 55.8 bits (133), Expect = 2e-08
Identities = 35/101 (34%), Positives = 54/101 (53%), Gaps = 21/101 (20%)
Query: 30 KDIEDVFYKYGAIRDIDLK-NRRGGPP--FAFVEFEDPRDAEDAVYGRDGYDYDGYRLRV 86
+D+ +VF +YG + +++ ++R G FAFV FE D+++A+ +G + DG R+RV
Sbjct: 133 RDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERANGMELDGRRIRV 192
Query: 87 EFP------------------RSGRGTGRGGGGGGGGGAPR 109
++ SG G G GGGGGGGGG R
Sbjct: 193 DYSITKRAHTPTPGIYMGRPTHSGGGGGGGGGGGGGGGGRR 233
>gi|239752336 PREDICTED: similar to RNA binding motif protein,
X-linked [Homo sapiens]
Length = 138
Score = 53.5 bits (127), Expect = 1e-07
Identities = 42/124 (33%), Positives = 54/124 (43%), Gaps = 30/124 (24%)
Query: 17 RIYVGNLPPDIRTKDIEDVFYKYGAI------RDIDLKNRRGGPPFAFVEFEDPRDAEDA 70
+ ++G L + K +E VF KYG I +D + RG FAF+ FE P DA+DA
Sbjct: 9 KFFIGGLNTETNKKALEAVFGKYGQIVEVHLMKDCETNKSRG---FAFITFERPADAKDA 65
Query: 71 VYGRDGYDYDGYRLRVEF---------------PRSGRGTGR--GGGGGGGGGAPRGRYG 113
+G DG ++VE P RG R GG GG GG
Sbjct: 66 ARDMNGKSLDGKAIKVEQATKPSFESGRRGPPPPPRSRGPPRVLRGGRGGSGGTRE---- 121
Query: 114 PPSR 117
PPSR
Sbjct: 122 PPSR 125
>gi|239746849 PREDICTED: hypothetical protein XP_002343863 [Homo
sapiens]
Length = 138
Score = 53.5 bits (127), Expect = 1e-07
Identities = 42/124 (33%), Positives = 54/124 (43%), Gaps = 30/124 (24%)
Query: 17 RIYVGNLPPDIRTKDIEDVFYKYGAI------RDIDLKNRRGGPPFAFVEFEDPRDAEDA 70
+ ++G L + K +E VF KYG I +D + RG FAF+ FE P DA+DA
Sbjct: 9 KFFIGGLNTETNKKALEAVFGKYGQIVEVHLMKDCETNKSRG---FAFITFERPADAKDA 65
Query: 71 VYGRDGYDYDGYRLRVEF---------------PRSGRGTGR--GGGGGGGGGAPRGRYG 113
+G DG ++VE P RG R GG GG GG
Sbjct: 66 ARDMNGKSLDGKAIKVEQATKPSFESGRRGPPPPPRSRGPPRVLRGGRGGSGGTRE---- 121
Query: 114 PPSR 117
PPSR
Sbjct: 122 PPSR 125
>gi|34740329 heterogeneous nuclear ribonucleoprotein A3 [Homo
sapiens]
Length = 378
Score = 51.6 bits (122), Expect = 4e-07
Identities = 38/116 (32%), Positives = 55/116 (47%), Gaps = 20/116 (17%)
Query: 17 RIYVGNLPPDIRTKDIEDVFYKYGAIRDID-LKNRRGGPP--FAFVEFEDPRDAEDAVYG 73
+I+VG + D ++ D F KYG I I+ +++R+ G FAFV F+D D D +
Sbjct: 127 KIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDD-HDTVDKIVV 185
Query: 74 RDGYDYDGYRLRV-------EFPRSGRGTGRGGGGG---------GGGGAPRGRYG 113
+ + +G+ V E +G GRGGG G GGGG GR G
Sbjct: 186 QKYHTINGHNCEVKKALSKQEMQSAGSQRGRGGGSGNFMGRGGNFGGGGGNFGRGG 241
Score = 31.6 bits (70), Expect = 0.47
Identities = 18/42 (42%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
Query: 72 YGRDGYDYDG---YRLRVEFPRSGRGTGRGGGGGGGGGAPRG 110
+G DG +Y G Y R + G G G GGG GGGG G
Sbjct: 270 FGGDGGNYGGGPGYSSRGGYGGGGPGYGNQGGGYGGGGGYDG 311
>gi|5031703 Ras-GTPase-activating protein SH3-domain-binding protein
[Homo sapiens]
Length = 466
Score = 51.6 bits (122), Expect = 4e-07
Identities = 34/110 (30%), Positives = 52/110 (47%), Gaps = 18/110 (16%)
Query: 17 RIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGG--PPFAFVEFEDPRDAEDAVYGR 74
++++GNLP ++ +++D F YG + ++L+ GG P F FV F+D + + R
Sbjct: 341 QLFIGNLPHEVDKSELKDFFQSYGNV--VELRINSGGKLPNFGFVVFDDSEPVQKVLSNR 398
Query: 75 DGYDYDGYRLRVEFPRS--------------GRGTGRGGGGGGGGGAPRG 110
RL VE ++ G G RGG GGG G PRG
Sbjct: 399 PIMFRGEVRLNVEEKKTRAAREGDRRDNRLRGPGGPRGGLGGGMRGPPRG 448
>gi|38327552 Ras-GTPase-activating protein SH3-domain-binding
protein [Homo sapiens]
Length = 466
Score = 51.6 bits (122), Expect = 4e-07
Identities = 34/110 (30%), Positives = 52/110 (47%), Gaps = 18/110 (16%)
Query: 17 RIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGG--PPFAFVEFEDPRDAEDAVYGR 74
++++GNLP ++ +++D F YG + ++L+ GG P F FV F+D + + R
Sbjct: 341 QLFIGNLPHEVDKSELKDFFQSYGNV--VELRINSGGKLPNFGFVVFDDSEPVQKVLSNR 398
Query: 75 DGYDYDGYRLRVEFPRS--------------GRGTGRGGGGGGGGGAPRG 110
RL VE ++ G G RGG GGG G PRG
Sbjct: 399 PIMFRGEVRLNVEEKKTRAAREGDRRDNRLRGPGGPRGGLGGGMRGPPRG 448
>gi|253970504 Ewing sarcoma breakpoint region 1 isoform 4 [Homo
sapiens]
Length = 600
Score = 51.2 bits (121), Expect = 6e-07
Identities = 45/151 (29%), Positives = 60/151 (39%), Gaps = 38/151 (25%)
Query: 13 NNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPF---------------A 57
+++ IYV L + D+ D F + G ++ N+R G P A
Sbjct: 302 SDNSAIYVQGLNDSVTLDDLADFFKQCGVVK----MNKRTGQPMIHIYLDKETGKPKGDA 357
Query: 58 FVEFEDPRDAEDAVYGRDGYDYDGYRLRVEF---------------PRSGRGTGRG-GGG 101
V +EDP A+ AV DG D+ G +L+V PR GRG GG
Sbjct: 358 TVSYEDPPTAKAAVEWFDGKDFQGSKLKVSLARKKPPMNSMRGGLPPREGRGMPPPLRGG 417
Query: 102 GGGGGAPRGRYGPPSRRSENRVVVSGLPPSG 132
GG G P G G R +R G PP G
Sbjct: 418 PGGPGGPGGPMGRMGGRGGDR---GGFPPRG 445
Score = 35.4 bits (80), Expect = 0.033
Identities = 31/91 (34%), Positives = 37/91 (40%), Gaps = 22/91 (24%)
Query: 73 GRDGYDYDGYRLRVEFPRSGRGTGRGGGGGGG--GG----------APRGRYGPPSRRSE 120
GR G+D G R GRG GRGG G G GG P GPP E
Sbjct: 247 GRGGFDRGG------MSRGGRGGGRGGMGSAGERGGFNKPGGPMDEGPDLDLGPPVDPDE 300
Query: 121 ----NRVVVSGLPPSGSWQDLKDHMREAGDV 147
+ + V GL S + DL D ++ G V
Sbjct: 301 DSDNSAIYVQGLNDSVTLDDLADFFKQCGVV 331
Score = 33.9 bits (76), Expect = 0.096
Identities = 23/60 (38%), Positives = 26/60 (43%), Gaps = 3/60 (5%)
Query: 90 RSGRGTGRGGGGGGGGGAPRGRYGPPSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCY 149
R GRG RGG GGG G P G GP + R G P D +H +E D Y
Sbjct: 544 RGGRGMDRGGFGGGRRGGPGGPPGPLMEQMGGRRGGRGGPGK---MDKGEHRQERRDRPY 600
Score = 27.7 bits (60), Expect = 6.9
Identities = 20/50 (40%), Positives = 21/50 (42%), Gaps = 8/50 (16%)
Query: 73 GRDGYDYDGYRLRVEFPRSGRGTGRGGGGGGG--------GGAPRGRYGP 114
G G D G+R R G G GR GG GG GG GR GP
Sbjct: 534 GGRGGDRGGFRGGRGMDRGGFGGGRRGGPGGPPGPLMEQMGGRRGGRGGP 583
>gi|253970502 Ewing sarcoma breakpoint region 1 isoform 3 [Homo
sapiens]
Length = 655
Score = 51.2 bits (121), Expect = 6e-07
Identities = 45/151 (29%), Positives = 60/151 (39%), Gaps = 38/151 (25%)
Query: 13 NNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPF---------------A 57
+++ IYV L + D+ D F + G ++ N+R G P A
Sbjct: 357 SDNSAIYVQGLNDSVTLDDLADFFKQCGVVK----MNKRTGQPMIHIYLDKETGKPKGDA 412
Query: 58 FVEFEDPRDAEDAVYGRDGYDYDGYRLRVEF---------------PRSGRGTGRG-GGG 101
V +EDP A+ AV DG D+ G +L+V PR GRG GG
Sbjct: 413 TVSYEDPPTAKAAVEWFDGKDFQGSKLKVSLARKKPPMNSMRGGLPPREGRGMPPPLRGG 472
Query: 102 GGGGGAPRGRYGPPSRRSENRVVVSGLPPSG 132
GG G P G G R +R G PP G
Sbjct: 473 PGGPGGPGGPMGRMGGRGGDR---GGFPPRG 500
Score = 37.0 bits (84), Expect = 0.011
Identities = 30/90 (33%), Positives = 36/90 (40%), Gaps = 21/90 (23%)
Query: 73 GRDGYDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGP--------------PSRR 118
GR G+D G R GRG GRGG G G G GP P
Sbjct: 303 GRGGFDRGG------MSRGGRGGGRGGMGAGERGGFNKPGGPMDEGPDLDLGPPVDPDED 356
Query: 119 SENRVV-VSGLPPSGSWQDLKDHMREAGDV 147
S+N + V GL S + DL D ++ G V
Sbjct: 357 SDNSAIYVQGLNDSVTLDDLADFFKQCGVV 386
Score = 33.9 bits (76), Expect = 0.096
Identities = 23/60 (38%), Positives = 26/60 (43%), Gaps = 3/60 (5%)
Query: 90 RSGRGTGRGGGGGGGGGAPRGRYGPPSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCY 149
R GRG RGG GGG G P G GP + R G P D +H +E D Y
Sbjct: 599 RGGRGMDRGGFGGGRRGGPGGPPGPLMEQMGGRRGGRGGPGK---MDKGEHRQERRDRPY 655
Score = 27.7 bits (60), Expect = 6.9
Identities = 20/50 (40%), Positives = 21/50 (42%), Gaps = 8/50 (16%)
Query: 73 GRDGYDYDGYRLRVEFPRSGRGTGRGGGGGGG--------GGAPRGRYGP 114
G G D G+R R G G GR GG GG GG GR GP
Sbjct: 589 GGRGGDRGGFRGGRGMDRGGFGGGRRGGPGGPPGPLMEQMGGRRGGRGGP 638
>gi|253970500 Ewing sarcoma breakpoint region 1 isoform 1 [Homo
sapiens]
Length = 661
Score = 51.2 bits (121), Expect = 6e-07
Identities = 45/151 (29%), Positives = 60/151 (39%), Gaps = 38/151 (25%)
Query: 13 NNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPF---------------A 57
+++ IYV L + D+ D F + G ++ N+R G P A
Sbjct: 363 SDNSAIYVQGLNDSVTLDDLADFFKQCGVVK----MNKRTGQPMIHIYLDKETGKPKGDA 418
Query: 58 FVEFEDPRDAEDAVYGRDGYDYDGYRLRVEF---------------PRSGRGTGRG-GGG 101
V +EDP A+ AV DG D+ G +L+V PR GRG GG
Sbjct: 419 TVSYEDPPTAKAAVEWFDGKDFQGSKLKVSLARKKPPMNSMRGGLPPREGRGMPPPLRGG 478
Query: 102 GGGGGAPRGRYGPPSRRSENRVVVSGLPPSG 132
GG G P G G R +R G PP G
Sbjct: 479 PGGPGGPGGPMGRMGGRGGDR---GGFPPRG 506
Score = 37.0 bits (84), Expect = 0.011
Identities = 30/90 (33%), Positives = 36/90 (40%), Gaps = 21/90 (23%)
Query: 73 GRDGYDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGP--------------PSRR 118
GR G+D G R GRG GRGG G G G GP P
Sbjct: 309 GRGGFDRGG------MSRGGRGGGRGGMGAGERGGFNKPGGPMDEGPDLDLGPPVDPDED 362
Query: 119 SENRVV-VSGLPPSGSWQDLKDHMREAGDV 147
S+N + V GL S + DL D ++ G V
Sbjct: 363 SDNSAIYVQGLNDSVTLDDLADFFKQCGVV 392
Score = 33.9 bits (76), Expect = 0.096
Identities = 23/60 (38%), Positives = 26/60 (43%), Gaps = 3/60 (5%)
Query: 90 RSGRGTGRGGGGGGGGGAPRGRYGPPSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCY 149
R GRG RGG GGG G P G GP + R G P D +H +E D Y
Sbjct: 605 RGGRGMDRGGFGGGRRGGPGGPPGPLMEQMGGRRGGRGGPGK---MDKGEHRQERRDRPY 661
Score = 27.7 bits (60), Expect = 6.9
Identities = 20/50 (40%), Positives = 21/50 (42%), Gaps = 8/50 (16%)
Query: 73 GRDGYDYDGYRLRVEFPRSGRGTGRGGGGGGG--------GGAPRGRYGP 114
G G D G+R R G G GR GG GG GG GR GP
Sbjct: 595 GGRGGDRGGFRGGRGMDRGGFGGGRRGGPGGPPGPLMEQMGGRRGGRGGP 644
>gi|4885225 Ewing sarcoma breakpoint region 1 isoform 2 [Homo
sapiens]
Length = 656
Score = 51.2 bits (121), Expect = 6e-07
Identities = 45/151 (29%), Positives = 60/151 (39%), Gaps = 38/151 (25%)
Query: 13 NNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPF---------------A 57
+++ IYV L + D+ D F + G ++ N+R G P A
Sbjct: 358 SDNSAIYVQGLNDSVTLDDLADFFKQCGVVK----MNKRTGQPMIHIYLDKETGKPKGDA 413
Query: 58 FVEFEDPRDAEDAVYGRDGYDYDGYRLRVEF---------------PRSGRGTGRG-GGG 101
V +EDP A+ AV DG D+ G +L+V PR GRG GG
Sbjct: 414 TVSYEDPPTAKAAVEWFDGKDFQGSKLKVSLARKKPPMNSMRGGLPPREGRGMPPPLRGG 473
Query: 102 GGGGGAPRGRYGPPSRRSENRVVVSGLPPSG 132
GG G P G G R +R G PP G
Sbjct: 474 PGGPGGPGGPMGRMGGRGGDR---GGFPPRG 501
Score = 35.4 bits (80), Expect = 0.033
Identities = 31/91 (34%), Positives = 37/91 (40%), Gaps = 22/91 (24%)
Query: 73 GRDGYDYDGYRLRVEFPRSGRGTGRGGGGGGG--GG----------APRGRYGPPSRRSE 120
GR G+D G R GRG GRGG G G GG P GPP E
Sbjct: 303 GRGGFDRGG------MSRGGRGGGRGGMGSAGERGGFNKPGGPMDEGPDLDLGPPVDPDE 356
Query: 121 ----NRVVVSGLPPSGSWQDLKDHMREAGDV 147
+ + V GL S + DL D ++ G V
Sbjct: 357 DSDNSAIYVQGLNDSVTLDDLADFFKQCGVV 387
Score = 33.9 bits (76), Expect = 0.096
Identities = 23/60 (38%), Positives = 26/60 (43%), Gaps = 3/60 (5%)
Query: 90 RSGRGTGRGGGGGGGGGAPRGRYGPPSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCY 149
R GRG RGG GGG G P G GP + R G P D +H +E D Y
Sbjct: 600 RGGRGMDRGGFGGGRRGGPGGPPGPLMEQMGGRRGGRGGPGK---MDKGEHRQERRDRPY 656
Score = 27.7 bits (60), Expect = 6.9
Identities = 20/50 (40%), Positives = 21/50 (42%), Gaps = 8/50 (16%)
Query: 73 GRDGYDYDGYRLRVEFPRSGRGTGRGGGGGGG--------GGAPRGRYGP 114
G G D G+R R G G GR GG GG GG GR GP
Sbjct: 590 GGRGGDRGGFRGGRGMDRGGFGGGRRGGPGGPPGPLMEQMGGRRGGRGGP 639
>gi|4759098 splicing factor, arginine/serine-rich 10 [Homo sapiens]
Length = 288
Score = 51.2 bits (121), Expect = 6e-07
Identities = 42/133 (31%), Positives = 57/133 (42%), Gaps = 41/133 (30%)
Query: 15 DCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDL---KNRRGGPPFAFVEFEDPRDAEDAV 71
+C + V L +D+ +VF KYG I D+ + + R FAFV FE+ DA++A
Sbjct: 117 NCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAK 176
Query: 72 YGRDGYDYDGYRLRVEF--------PRSG------------------RGTGRG------- 98
+G + DG R+RV+F P G RG RG
Sbjct: 177 ERANGMELDGRRIRVDFSITKRPHTPTPGIYMGRPTYGSSRRRDYYDRGYDRGYDDRDYY 236
Query: 99 -----GGGGGGGG 106
GGGGGGGG
Sbjct: 237 SRSYRGGGGGGGG 249
>gi|5730079 FUS interacting protein (serine-arginine rich) 1
isoform 1 [Homo sapiens]
Length = 183
Score = 50.8 bits (120), Expect = 8e-07
Identities = 30/82 (36%), Positives = 47/82 (57%), Gaps = 5/82 (6%)
Query: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDI----DLKNRRGGPPFAFVEFEDPRDAEDAVYG 73
++V N+ D R++D+ F +YG I D+ D RR FA+V+FED RDAEDA++
Sbjct: 12 LFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRG-FAYVQFEDVRDAEDALHN 70
Query: 74 RDGYDYDGYRLRVEFPRSGRGT 95
D G ++ ++F + R T
Sbjct: 71 LDRKWICGRQIEIQFAQGDRKT 92
>gi|169161980 PREDICTED: similar to FUS interacting protein
(serine-arginine rich) 1, partial [Homo sapiens]
Length = 181
Score = 50.8 bits (120), Expect = 8e-07
Identities = 30/82 (36%), Positives = 47/82 (57%), Gaps = 5/82 (6%)
Query: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDI----DLKNRRGGPPFAFVEFEDPRDAEDAVYG 73
++V N+ D R++D+ F +YG I D+ D RR FA+V+FED RDAEDA++
Sbjct: 12 LFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRG-FAYVQFEDVRDAEDALHN 70
Query: 74 RDGYDYDGYRLRVEFPRSGRGT 95
D G ++ ++F + R T
Sbjct: 71 LDRKWICGRQIEIQFAQGDRKT 92
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.145 0.461
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,109,480
Number of Sequences: 37866
Number of extensions: 579874
Number of successful extensions: 11002
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 490
Number of HSP's successfully gapped in prelim test: 240
Number of HSP's that attempted gapping in prelim test: 5141
Number of HSP's gapped (non-prelim): 3632
length of query: 201
length of database: 18,247,518
effective HSP length: 97
effective length of query: 104
effective length of database: 14,574,516
effective search space: 1515749664
effective search space used: 1515749664
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.