Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 118442828
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|118442828 beta-tubulin cofactor E [Homo sapiens]
(527 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|118442828 beta-tubulin cofactor E [Homo sapiens] 1060 0.0
gi|4507375 beta-tubulin cofactor E [Homo sapiens] 1060 0.0
gi|194239701 tubulin folding cofactor E-like [Homo sapiens] 127 3e-29
gi|194239699 tubulin folding cofactor E-like [Homo sapiens] 127 3e-29
gi|206725447 leucine rich repeat containing 23 isoform a [Homo s... 55 2e-07
gi|42542396 leucine rich repeat containing 23 isoform a [Homo sa... 55 2e-07
gi|18496983 CAP-GLY domain containing linker protein 3 [Homo sap... 50 5e-06
gi|31982881 CAP-GLY domain containing linker protein family, mem... 50 7e-06
gi|4506013 protein phosphatase 1, regulatory subunit 7 [Homo sap... 49 1e-05
gi|38044112 restin isoform b [Homo sapiens] 48 3e-05
gi|4506751 restin isoform a [Homo sapiens] 48 3e-05
gi|7662320 leucine-rich repeats and immunoglobulin-like domains ... 48 3e-05
gi|197333706 leucine rich repeat containing 8 family, member D [... 47 4e-05
gi|34222199 leucine rich repeat containing 8 family, member D [H... 47 4e-05
gi|46852172 kinesin family member 13B [Homo sapiens] 47 6e-05
gi|50428925 cytoskeleton associated protein 1 [Homo sapiens] 46 1e-04
gi|205277468 leucine rich repeat containing 15 isoform a [Homo s... 46 1e-04
gi|18677767 leucine rich repeat containing 15 isoform b [Homo sa... 46 1e-04
gi|205277392 dynactin 1 isoform 3 [Homo sapiens] 45 2e-04
gi|13259510 dynactin 1 isoform 1 [Homo sapiens] 45 2e-04
gi|116008447 CAP-GLY domain containing linker protein 2 isoform ... 45 2e-04
gi|14702162 CAP-GLY domain containing linker protein 2 isoform 2... 45 2e-04
gi|52426787 oligodendrocyte myelin glycoprotein [Homo sapiens] 45 2e-04
gi|171184451 centrosome-associated protein 350 [Homo sapiens] 45 2e-04
gi|16904383 leucine rich repeat containing 7 [Homo sapiens] 44 3e-04
gi|50593002 small nuclear ribonucleoprotein polypeptide A' [Homo... 44 5e-04
gi|194394161 leucine rich repeat containing 57 [Homo sapiens] 42 0.001
gi|150378449 X-ray radiation resistance associated 1 [Homo sapiens] 42 0.001
gi|33285015 leucine rich repeat containing 28 [Homo sapiens] 42 0.002
gi|110825984 malignant fibrous histiocytoma amplified sequence 1... 41 0.002
>gi|118442828 beta-tubulin cofactor E [Homo sapiens]
Length = 527
Score = 1060 bits (2741), Expect = 0.0
Identities = 527/527 (100%), Positives = 527/527 (100%)
Query: 1 MSDTLTADVIGRRVEVNGEHATVRFAGVVPPVAGPWLGVEWDNPERGKHDGSHEGTVYFK 60
MSDTLTADVIGRRVEVNGEHATVRFAGVVPPVAGPWLGVEWDNPERGKHDGSHEGTVYFK
Sbjct: 1 MSDTLTADVIGRRVEVNGEHATVRFAGVVPPVAGPWLGVEWDNPERGKHDGSHEGTVYFK 60
Query: 61 CRHPTGGSFIRPNKVNFGTDFLTAIKNRYVLEDGPEEDRKEQIVTIGNKPVETIGFDSIM 120
CRHPTGGSFIRPNKVNFGTDFLTAIKNRYVLEDGPEEDRKEQIVTIGNKPVETIGFDSIM
Sbjct: 61 CRHPTGGSFIRPNKVNFGTDFLTAIKNRYVLEDGPEEDRKEQIVTIGNKPVETIGFDSIM 120
Query: 121 KQQSQLSKLQEVSLRNCAVSCAGEKGGVAEACPNIRKVDLSKNLLSSWDEVIHIADQLRH 180
KQQSQLSKLQEVSLRNCAVSCAGEKGGVAEACPNIRKVDLSKNLLSSWDEVIHIADQLRH
Sbjct: 121 KQQSQLSKLQEVSLRNCAVSCAGEKGGVAEACPNIRKVDLSKNLLSSWDEVIHIADQLRH 180
Query: 181 LEVLNVSENKLKFPSGSVLTGTLSVLKVLVLNQTGITWAEVLRCVAGCPGLEELYLESNN 240
LEVLNVSENKLKFPSGSVLTGTLSVLKVLVLNQTGITWAEVLRCVAGCPGLEELYLESNN
Sbjct: 181 LEVLNVSENKLKFPSGSVLTGTLSVLKVLVLNQTGITWAEVLRCVAGCPGLEELYLESNN 240
Query: 241 IFISERPTDVLQTVKLLDLSSNQLIDENQLYLIAHLPRLEQLILSDTGISSLHFPDAGIG 300
IFISERPTDVLQTVKLLDLSSNQLIDENQLYLIAHLPRLEQLILSDTGISSLHFPDAGIG
Sbjct: 241 IFISERPTDVLQTVKLLDLSSNQLIDENQLYLIAHLPRLEQLILSDTGISSLHFPDAGIG 300
Query: 301 CKTSMFPSLKYLVVNDNQISQWSFFNELEKLPSLRALSCLRNPLTKEDKEAETARLLIIA 360
CKTSMFPSLKYLVVNDNQISQWSFFNELEKLPSLRALSCLRNPLTKEDKEAETARLLIIA
Sbjct: 301 CKTSMFPSLKYLVVNDNQISQWSFFNELEKLPSLRALSCLRNPLTKEDKEAETARLLIIA 360
Query: 361 SIGQLKTLNKCEILPEERRRAELDYRKAFGNEWKQAGGHKDPEKNRLSEEFLTAHPRYQF 420
SIGQLKTLNKCEILPEERRRAELDYRKAFGNEWKQAGGHKDPEKNRLSEEFLTAHPRYQF
Sbjct: 361 SIGQLKTLNKCEILPEERRRAELDYRKAFGNEWKQAGGHKDPEKNRLSEEFLTAHPRYQF 420
Query: 421 LCLKYGAPEDWELKTQQPLMLKNQLLTLKIKYPHQLDQKVLEKQLPGSMTIQKVKGLLSR 480
LCLKYGAPEDWELKTQQPLMLKNQLLTLKIKYPHQLDQKVLEKQLPGSMTIQKVKGLLSR
Sbjct: 421 LCLKYGAPEDWELKTQQPLMLKNQLLTLKIKYPHQLDQKVLEKQLPGSMTIQKVKGLLSR 480
Query: 481 LLKVPVSDLLLSYESPKKPGREIELENDLKSLQFYSVENGDCLLVRW 527
LLKVPVSDLLLSYESPKKPGREIELENDLKSLQFYSVENGDCLLVRW
Sbjct: 481 LLKVPVSDLLLSYESPKKPGREIELENDLKSLQFYSVENGDCLLVRW 527
>gi|4507375 beta-tubulin cofactor E [Homo sapiens]
Length = 527
Score = 1060 bits (2741), Expect = 0.0
Identities = 527/527 (100%), Positives = 527/527 (100%)
Query: 1 MSDTLTADVIGRRVEVNGEHATVRFAGVVPPVAGPWLGVEWDNPERGKHDGSHEGTVYFK 60
MSDTLTADVIGRRVEVNGEHATVRFAGVVPPVAGPWLGVEWDNPERGKHDGSHEGTVYFK
Sbjct: 1 MSDTLTADVIGRRVEVNGEHATVRFAGVVPPVAGPWLGVEWDNPERGKHDGSHEGTVYFK 60
Query: 61 CRHPTGGSFIRPNKVNFGTDFLTAIKNRYVLEDGPEEDRKEQIVTIGNKPVETIGFDSIM 120
CRHPTGGSFIRPNKVNFGTDFLTAIKNRYVLEDGPEEDRKEQIVTIGNKPVETIGFDSIM
Sbjct: 61 CRHPTGGSFIRPNKVNFGTDFLTAIKNRYVLEDGPEEDRKEQIVTIGNKPVETIGFDSIM 120
Query: 121 KQQSQLSKLQEVSLRNCAVSCAGEKGGVAEACPNIRKVDLSKNLLSSWDEVIHIADQLRH 180
KQQSQLSKLQEVSLRNCAVSCAGEKGGVAEACPNIRKVDLSKNLLSSWDEVIHIADQLRH
Sbjct: 121 KQQSQLSKLQEVSLRNCAVSCAGEKGGVAEACPNIRKVDLSKNLLSSWDEVIHIADQLRH 180
Query: 181 LEVLNVSENKLKFPSGSVLTGTLSVLKVLVLNQTGITWAEVLRCVAGCPGLEELYLESNN 240
LEVLNVSENKLKFPSGSVLTGTLSVLKVLVLNQTGITWAEVLRCVAGCPGLEELYLESNN
Sbjct: 181 LEVLNVSENKLKFPSGSVLTGTLSVLKVLVLNQTGITWAEVLRCVAGCPGLEELYLESNN 240
Query: 241 IFISERPTDVLQTVKLLDLSSNQLIDENQLYLIAHLPRLEQLILSDTGISSLHFPDAGIG 300
IFISERPTDVLQTVKLLDLSSNQLIDENQLYLIAHLPRLEQLILSDTGISSLHFPDAGIG
Sbjct: 241 IFISERPTDVLQTVKLLDLSSNQLIDENQLYLIAHLPRLEQLILSDTGISSLHFPDAGIG 300
Query: 301 CKTSMFPSLKYLVVNDNQISQWSFFNELEKLPSLRALSCLRNPLTKEDKEAETARLLIIA 360
CKTSMFPSLKYLVVNDNQISQWSFFNELEKLPSLRALSCLRNPLTKEDKEAETARLLIIA
Sbjct: 301 CKTSMFPSLKYLVVNDNQISQWSFFNELEKLPSLRALSCLRNPLTKEDKEAETARLLIIA 360
Query: 361 SIGQLKTLNKCEILPEERRRAELDYRKAFGNEWKQAGGHKDPEKNRLSEEFLTAHPRYQF 420
SIGQLKTLNKCEILPEERRRAELDYRKAFGNEWKQAGGHKDPEKNRLSEEFLTAHPRYQF
Sbjct: 361 SIGQLKTLNKCEILPEERRRAELDYRKAFGNEWKQAGGHKDPEKNRLSEEFLTAHPRYQF 420
Query: 421 LCLKYGAPEDWELKTQQPLMLKNQLLTLKIKYPHQLDQKVLEKQLPGSMTIQKVKGLLSR 480
LCLKYGAPEDWELKTQQPLMLKNQLLTLKIKYPHQLDQKVLEKQLPGSMTIQKVKGLLSR
Sbjct: 421 LCLKYGAPEDWELKTQQPLMLKNQLLTLKIKYPHQLDQKVLEKQLPGSMTIQKVKGLLSR 480
Query: 481 LLKVPVSDLLLSYESPKKPGREIELENDLKSLQFYSVENGDCLLVRW 527
LLKVPVSDLLLSYESPKKPGREIELENDLKSLQFYSVENGDCLLVRW
Sbjct: 481 LLKVPVSDLLLSYESPKKPGREIELENDLKSLQFYSVENGDCLLVRW 527
>gi|194239701 tubulin folding cofactor E-like [Homo sapiens]
Length = 424
Score = 127 bits (319), Expect = 3e-29
Identities = 102/397 (25%), Positives = 184/397 (46%), Gaps = 37/397 (9%)
Query: 134 LRNCAVSCAGEKGGVAEACPNIRKVDLSKNLLSSWDEVIHIADQLRHLEVLNVSENKLKF 193
L +C ++CAG++ +A C ++ ++DLS N L W EV I + LE LN+S N L
Sbjct: 55 LNSCGITCAGDEKEIAAFCAHVSELDLSDNKLEDWHEVSKIVSNVPQLEFLNLSSNPLNL 114
Query: 194 PSGSVL----TGTLSVLKVLVLNQTGITWAEVLRCVAGCPGLEELYLESNNIFISERPTD 249
SVL G+ S ++ LVLN + +W V + P LEEL+L N+ P+
Sbjct: 115 ---SVLERTCAGSFSGVRKLVLNNSKASWETVHMILQELPDLEELFLCLNDYETVSCPSI 171
Query: 250 VLQTVKLLDLSSNQLIDENQLYLIAHL-PRLEQLILSDTGISSLHFPDAGIGCKTSMFPS 308
++KLL ++ N L D ++ + + P L+ L+L++ ++++ PD + +FP+
Sbjct: 172 CCHSLKLLHITDNNLQDWTEIRKLGVMFPSLDTLVLANNHLNAIEEPDDSLA---RLFPN 228
Query: 309 LKYLVVNDNQISQWSFFNELEKLPSLRALSCLRNPLTKEDKEAETARLLIIASIGQLKTL 368
L+ + ++ + + W ++L P L + L PL + E R L+IA + + L
Sbjct: 229 LRSISLHKSGLQSWEDIDKLNSFPKLEEVRLLGIPLL-QPYTTEERRKLVIARLPSVSKL 287
Query: 369 NKCEILPEERRRAELDYRKAFGNEWKQAGGHKDPEKNRLSEEFLTAHPRYQFLCLKYGAP 428
N + ER +E + + + + P++ RY L KYG
Sbjct: 288 NGSVVTDGEREDSERFFIRYYVDV---------PQEE--------VPFRYHELITKYGKL 330
Query: 429 EDWELKTQQPLMLKNQLLTLKIKYPHQLDQKVLEKQLPGSMTIQKVKGLLSRLLKVPVSD 488
E PL + K + +V E + T+ ++K L L+++P S+
Sbjct: 331 E--------PLAEVDLRPQSSAKVEVHFNDQVEEMSIRLDQTVAELKKQLKTLVQLPTSN 382
Query: 489 LLLSYESPKKPGREIELENDLKSLQFYSVENGDCLLV 525
+LL Y + P E++ ++L + + +GD + V
Sbjct: 383 MLLYYFDHEAPFGPEEMKYSSRALHSFGIRDGDKIYV 419
>gi|194239699 tubulin folding cofactor E-like [Homo sapiens]
Length = 424
Score = 127 bits (319), Expect = 3e-29
Identities = 102/397 (25%), Positives = 184/397 (46%), Gaps = 37/397 (9%)
Query: 134 LRNCAVSCAGEKGGVAEACPNIRKVDLSKNLLSSWDEVIHIADQLRHLEVLNVSENKLKF 193
L +C ++CAG++ +A C ++ ++DLS N L W EV I + LE LN+S N L
Sbjct: 55 LNSCGITCAGDEKEIAAFCAHVSELDLSDNKLEDWHEVSKIVSNVPQLEFLNLSSNPLNL 114
Query: 194 PSGSVL----TGTLSVLKVLVLNQTGITWAEVLRCVAGCPGLEELYLESNNIFISERPTD 249
SVL G+ S ++ LVLN + +W V + P LEEL+L N+ P+
Sbjct: 115 ---SVLERTCAGSFSGVRKLVLNNSKASWETVHMILQELPDLEELFLCLNDYETVSCPSI 171
Query: 250 VLQTVKLLDLSSNQLIDENQLYLIAHL-PRLEQLILSDTGISSLHFPDAGIGCKTSMFPS 308
++KLL ++ N L D ++ + + P L+ L+L++ ++++ PD + +FP+
Sbjct: 172 CCHSLKLLHITDNNLQDWTEIRKLGVMFPSLDTLVLANNHLNAIEEPDDSLA---RLFPN 228
Query: 309 LKYLVVNDNQISQWSFFNELEKLPSLRALSCLRNPLTKEDKEAETARLLIIASIGQLKTL 368
L+ + ++ + + W ++L P L + L PL + E R L+IA + + L
Sbjct: 229 LRSISLHKSGLQSWEDIDKLNSFPKLEEVRLLGIPLL-QPYTTEERRKLVIARLPSVSKL 287
Query: 369 NKCEILPEERRRAELDYRKAFGNEWKQAGGHKDPEKNRLSEEFLTAHPRYQFLCLKYGAP 428
N + ER +E + + + + P++ RY L KYG
Sbjct: 288 NGSVVTDGEREDSERFFIRYYVDV---------PQEE--------VPFRYHELITKYGKL 330
Query: 429 EDWELKTQQPLMLKNQLLTLKIKYPHQLDQKVLEKQLPGSMTIQKVKGLLSRLLKVPVSD 488
E PL + K + +V E + T+ ++K L L+++P S+
Sbjct: 331 E--------PLAEVDLRPQSSAKVEVHFNDQVEEMSIRLDQTVAELKKQLKTLVQLPTSN 382
Query: 489 LLLSYESPKKPGREIELENDLKSLQFYSVENGDCLLV 525
+LL Y + P E++ ++L + + +GD + V
Sbjct: 383 MLLYYFDHEAPFGPEEMKYSSRALHSFGIRDGDKIYV 419
>gi|206725447 leucine rich repeat containing 23 isoform a [Homo
sapiens]
Length = 343
Score = 54.7 bits (130), Expect = 2e-07
Identities = 72/269 (26%), Positives = 117/269 (43%), Gaps = 42/269 (15%)
Query: 154 NIRKVDLSKNLLSSWDEVIHIADQLRHLEVLNVSENKLKFPSGSVLTGTLSVLKVLVLNQ 213
++R VD+S+N L+ + + L HL L N+L+ S L L++
Sbjct: 92 HLRYVDISENHLTDLSPL----NYLTHLLWLKADGNRLR----SAQMNELPYLQIASFAY 143
Query: 214 TGITWAEVLRCVAGCPGLEELYLESNNI-FISERPTDVLQTVKLLDLSSNQLIDENQLYL 272
IT E + P LE L L+ N+I ++ + L ++ ++L NQL + L
Sbjct: 144 NQITDTEGI----SHPRLETLNLKGNSIHMVTGLDPEKLISLHTVELRGNQL----ESTL 195
Query: 273 IAHLPRLEQLILSD------------TGISSLHFPDAGIGCKTSM---FPSLKYLVVNDN 317
+LP+L+ L L+ + +++LH D I + SL+YL + N
Sbjct: 196 GINLPKLKNLYLAQNMLKKVEGLEDLSNLTTLHLRDNQIDTLSGFSREMKSLQYLNLRGN 255
Query: 318 QISQWSFFNELEKLPSLRALSCLRNPLTKEDKEAETARLLIIASIGQLKTLNKCEILPEE 377
++ +L LP LRAL L NP T E + A + + L+ L+K EE
Sbjct: 256 MVANLGELAKLRDLPKLRALVLLDNPCTDETSYRQEA----LVQMPYLERLDK--EFYEE 309
Query: 378 RRRAELDYRKAFGNEWKQAGGHKDPEKNR 406
RAE D + E K+ ++PE R
Sbjct: 310 EERAEADVIRQRLKEEKE----QEPEPQR 334
>gi|42542396 leucine rich repeat containing 23 isoform a [Homo
sapiens]
Length = 343
Score = 54.7 bits (130), Expect = 2e-07
Identities = 72/269 (26%), Positives = 117/269 (43%), Gaps = 42/269 (15%)
Query: 154 NIRKVDLSKNLLSSWDEVIHIADQLRHLEVLNVSENKLKFPSGSVLTGTLSVLKVLVLNQ 213
++R VD+S+N L+ + + L HL L N+L+ S L L++
Sbjct: 92 HLRYVDISENHLTDLSPL----NYLTHLLWLKADGNRLR----SAQMNELPYLQIASFAY 143
Query: 214 TGITWAEVLRCVAGCPGLEELYLESNNI-FISERPTDVLQTVKLLDLSSNQLIDENQLYL 272
IT E + P LE L L+ N+I ++ + L ++ ++L NQL + L
Sbjct: 144 NQITDTEGI----SHPRLETLNLKGNSIHMVTGLDPEKLISLHTVELRGNQL----ESTL 195
Query: 273 IAHLPRLEQLILSD------------TGISSLHFPDAGIGCKTSM---FPSLKYLVVNDN 317
+LP+L+ L L+ + +++LH D I + SL+YL + N
Sbjct: 196 GINLPKLKNLYLAQNMLKKVEGLEDLSNLTTLHLRDNQIDTLSGFSREMKSLQYLNLRGN 255
Query: 318 QISQWSFFNELEKLPSLRALSCLRNPLTKEDKEAETARLLIIASIGQLKTLNKCEILPEE 377
++ +L LP LRAL L NP T E + A + + L+ L+K EE
Sbjct: 256 MVANLGELAKLRDLPKLRALVLLDNPCTDETSYRQEA----LVQMPYLERLDK--EFYEE 309
Query: 378 RRRAELDYRKAFGNEWKQAGGHKDPEKNR 406
RAE D + E K+ ++PE R
Sbjct: 310 EERAEADVIRQRLKEEKE----QEPEPQR 334
>gi|18496983 CAP-GLY domain containing linker protein 3 [Homo
sapiens]
Length = 547
Score = 50.1 bits (118), Expect = 5e-06
Identities = 30/72 (41%), Positives = 41/72 (56%), Gaps = 3/72 (4%)
Query: 10 IGRRVEVNGEHA-TVRFAGVVPPVAGPWLGVEWDNPERGKHDGSHEGTVYFKCRHPTGGS 68
+G RV ++G+ T+RF G +G W+GVE D PE GK+DGS G YF C P G
Sbjct: 296 LGDRVLLDGQKTGTLRFCGTTEFASGQWVGVELDEPE-GKNDGSVGGVRYFIC-PPKQGL 353
Query: 69 FIRPNKVNFGTD 80
F +K++ D
Sbjct: 354 FASVSKISKAVD 365
Score = 43.1 bits (100), Expect = 6e-04
Identities = 29/74 (39%), Positives = 35/74 (47%), Gaps = 4/74 (5%)
Query: 10 IGRRVEVNGE-HATVRFAGVVPPVAGPWLGVEWDNPERGKHDGSHEGTVYFKC--RHPTG 66
+G +V V G+ VRF G G W G+E D P GKHDGS G YF C RH
Sbjct: 418 VGDQVLVAGQKQGIVRFYGKTDFAPGYWYGIELDQPT-GKHDGSVFGVRYFTCPPRHGVF 476
Query: 67 GSFIRPNKVNFGTD 80
R ++ TD
Sbjct: 477 APASRIQRIGGSTD 490
>gi|31982881 CAP-GLY domain containing linker protein family, member
4 [Homo sapiens]
Length = 705
Score = 49.7 bits (117), Expect = 7e-06
Identities = 31/77 (40%), Positives = 40/77 (51%), Gaps = 3/77 (3%)
Query: 10 IGRRVEVNGEH-ATVRFAGVVPPVAGPWLGVEWDNPERGKHDGSHEGTVYFKCRHPTGGS 68
+G RV V G+ T+RF G G W G+E + P GK+DGS G YF C P G
Sbjct: 487 LGERVLVVGQRLGTIRFFGTTNFAPGYWYGIELEKP-HGKNDGSVGGVQYFSC-SPRYGI 544
Query: 69 FIRPNKVNFGTDFLTAI 85
F P++V TD L +
Sbjct: 545 FAPPSRVQRVTDSLDTL 561
Score = 45.4 bits (106), Expect = 1e-04
Identities = 27/68 (39%), Positives = 38/68 (55%), Gaps = 3/68 (4%)
Query: 10 IGRRVEVNGEHA-TVRFAGVVPPVAGPWLGVEWDNPERGKHDGSHEGTVYFKCRHPTGGS 68
+G RV + G+ T+RF G +G W G+E D PE GK++GS YFKC P G
Sbjct: 285 LGDRVVIAGQKVGTLRFCGTTEFASGQWAGIELDEPE-GKNNGSVGKVQYFKCA-PKYGI 342
Query: 69 FIRPNKVN 76
F +K++
Sbjct: 343 FAPLSKIS 350
Score = 43.1 bits (100), Expect = 6e-04
Identities = 23/61 (37%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Query: 17 NGEHATVRFAGVVPPVAGPWLGVEWDNPERGKHDGSHEGTVYFKCRHPTGGSFIRPNKVN 76
+ E TVR+ G +G WLG+E +GK+DGS YF C+ P G +RP++V
Sbjct: 634 SNEMGTVRYVGPTDFASGIWLGLEL-RSAKGKNDGSVGDKRYFTCK-PNHGVLVRPSRVT 691
Query: 77 F 77
+
Sbjct: 692 Y 692
>gi|4506013 protein phosphatase 1, regulatory subunit 7 [Homo
sapiens]
Length = 360
Score = 48.5 bits (114), Expect = 1e-05
Identities = 60/230 (26%), Positives = 96/230 (41%), Gaps = 29/230 (12%)
Query: 150 EACPNIRKVDLSKNLLSSWDEVIHIADQLRHLEVLNVSENKLKFPSGSVLTGTLSVLKVL 209
EA + +D+S NLL + + V D+L L+ L + NK+ LS L L
Sbjct: 139 EALTELEILDISFNLLRNIEGV----DKLTRLKKLFLVNNKIS------KIENLSNLHQL 188
Query: 210 VLNQTGITWAEVLRCVAGCPGLEELYLESNNIFISERPTDVLQTVKLLDLSSNQLIDENQ 269
+ + G + + LE L+L N I + D L + +L + SN+L +
Sbjct: 189 QMLELGSNRIRAIENIDTLTNLESLFLGKNKITKLQN-LDALTNLTVLSMQSNRL---TK 244
Query: 270 LYLIAHLPRLEQLILSDTGI---------SSLHFPDAGIGC-----KTSMFPSLKYLVVN 315
+ + +L L +L LS GI + L D S L+ +N
Sbjct: 245 IEGLQNLVNLRELYLSHNGIEVIEGLENNNKLTMLDIASNRIKKIENISHLTELQEFWMN 304
Query: 316 DNQISQWSFFNELEKLPSLRALSCLRNPLTKEDKEAETARLLIIASIGQL 365
DN + WS +EL+ SL + RNPL K D + +L + S+ Q+
Sbjct: 305 DNLLESWSDLDELKGARSLETVYLERNPLQK-DPQYRRKVMLALPSVRQI 353
>gi|38044112 restin isoform b [Homo sapiens]
Length = 1392
Score = 47.8 bits (112), Expect = 3e-05
Identities = 32/67 (47%), Positives = 37/67 (55%), Gaps = 3/67 (4%)
Query: 10 IGRRVEVNGEHA-TVRFAGVVPPVAGPWLGVEWDNPERGKHDGSHEGTVYFKCRHPTGGS 68
IG RV V G A VRF G G W GVE D P GK+DG+ GT YF+C+ P G
Sbjct: 214 IGDRVLVGGTKAGVVRFLGETDFAKGEWCGVELDEP-LGKNDGAVAGTRYFQCQ-PKYGL 271
Query: 69 FIRPNKV 75
F +KV
Sbjct: 272 FAPVHKV 278
Score = 47.4 bits (111), Expect = 3e-05
Identities = 28/67 (41%), Positives = 36/67 (53%), Gaps = 3/67 (4%)
Query: 10 IGRRVEVNGEH-ATVRFAGVVPPVAGPWLGVEWDNPERGKHDGSHEGTVYFKCRHPTGGS 68
+G RV VNG ++F G G W G+ D P GK+DGS G YF+C P G
Sbjct: 60 VGERVWVNGNKPGFIQFLGETQFAPGQWAGIVLDEPI-GKNDGSVAGVRYFQC-EPLKGI 117
Query: 69 FIRPNKV 75
F RP+K+
Sbjct: 118 FTRPSKL 124
>gi|4506751 restin isoform a [Homo sapiens]
Length = 1427
Score = 47.8 bits (112), Expect = 3e-05
Identities = 32/67 (47%), Positives = 37/67 (55%), Gaps = 3/67 (4%)
Query: 10 IGRRVEVNGEHA-TVRFAGVVPPVAGPWLGVEWDNPERGKHDGSHEGTVYFKCRHPTGGS 68
IG RV V G A VRF G G W GVE D P GK+DG+ GT YF+C+ P G
Sbjct: 214 IGDRVLVGGTKAGVVRFLGETDFAKGEWCGVELDEP-LGKNDGAVAGTRYFQCQ-PKYGL 271
Query: 69 FIRPNKV 75
F +KV
Sbjct: 272 FAPVHKV 278
Score = 47.4 bits (111), Expect = 3e-05
Identities = 28/67 (41%), Positives = 36/67 (53%), Gaps = 3/67 (4%)
Query: 10 IGRRVEVNGEH-ATVRFAGVVPPVAGPWLGVEWDNPERGKHDGSHEGTVYFKCRHPTGGS 68
+G RV VNG ++F G G W G+ D P GK+DGS G YF+C P G
Sbjct: 60 VGERVWVNGNKPGFIQFLGETQFAPGQWAGIVLDEPI-GKNDGSVAGVRYFQC-EPLKGI 117
Query: 69 FIRPNKV 75
F RP+K+
Sbjct: 118 FTRPSKL 124
>gi|7662320 leucine-rich repeats and immunoglobulin-like domains 2
[Homo sapiens]
Length = 1065
Score = 47.8 bits (112), Expect = 3e-05
Identities = 47/174 (27%), Positives = 83/174 (47%), Gaps = 18/174 (10%)
Query: 150 EACPNIRKVDLSKNLLSSWDEVIHIADQLRHLEVLNVSENKLKFPSGSVLTGTLSVLKVL 209
E C + ++DLS N L+ DE + L LE LN+ +N++ + V LS L+ L
Sbjct: 308 EFCQRLSELDLSYNQLTRLDESAFVG--LSLLERLNLGDNRVTHIADGVFR-FLSNLQTL 364
Query: 210 VLNQTGITWA--EVLRCVAGCPGLEELYLESNNI-FISERPTDVLQTVKLLDLSSNQLID 266
L I+WA + AG L +L L+ N I I+++ L++++ LDL++N ++
Sbjct: 365 DLRNNEISWAIEDASEAFAGLTSLTKLILQGNQIKSITKKAFIGLESLEHLDLNNNAIMS 424
Query: 267 ENQLYLIAHLPRLEQLILSDTGISSLHFPDAGIGCKTSMFPSLKYLVVNDNQIS 320
+++ S T + L + + C + L++LV N+ Q S
Sbjct: 425 ------------IQENAFSQTHLKELILNTSSLLCDCHLKWLLQWLVDNNFQHS 466
>gi|197333706 leucine rich repeat containing 8 family, member D
[Homo sapiens]
Length = 858
Score = 47.0 bits (110), Expect = 4e-05
Identities = 66/237 (27%), Positives = 104/237 (43%), Gaps = 40/237 (16%)
Query: 154 NIRKVDLSKNLLSSWDEVIHIAD--QLRHLEVLNVSENKLKFPSGSVLTGTLSVLKVLVL 211
N+R++ L NL S +++I + +LRHL++L+V N K PS +T L LV+
Sbjct: 561 NLRELYLIGNLNSENNKMIGLESLRELRHLKILHVKSNLTKVPSN--ITDVAPHLTKLVI 618
Query: 212 NQTGITWAEVLRCVAGCPGLEELYLESNNIFISERPTDVLQTVKLLDLSSNQLIDENQLY 271
+ G T VL + + EL L++ + L ++ LDL SN + ++
Sbjct: 619 HNDG-TKLLVLNSLKKMMNVAELELQNCELERIPHAIFSLSNLQELDLKSNNIRTIEEII 677
Query: 272 LIAHLPRLEQLILSDTGISSLHFPDAGIGCKTSMFPSLKYLVVNDNQISQWSFFNELEKL 331
HL RL L L I ++ PS+ ++ N S + N+LE L
Sbjct: 678 SFQHLKRLTCLKLWHNKIVTIP-------------PSITHV---KNLESLYFSNNKLESL 721
Query: 332 P----SLRALSCLRNPLTKEDKEAETARLLIIASIGQLKTL-------NKCEILPEE 377
P SL+ L CL D ++ I IG L+ L NK +ILP++
Sbjct: 722 PVAVFSLQKLRCL-------DVSYNNISMIPI-EIGLLQNLQHLHITGNKVDILPKQ 770
>gi|34222199 leucine rich repeat containing 8 family, member D [Homo
sapiens]
Length = 858
Score = 47.0 bits (110), Expect = 4e-05
Identities = 66/237 (27%), Positives = 104/237 (43%), Gaps = 40/237 (16%)
Query: 154 NIRKVDLSKNLLSSWDEVIHIAD--QLRHLEVLNVSENKLKFPSGSVLTGTLSVLKVLVL 211
N+R++ L NL S +++I + +LRHL++L+V N K PS +T L LV+
Sbjct: 561 NLRELYLIGNLNSENNKMIGLESLRELRHLKILHVKSNLTKVPSN--ITDVAPHLTKLVI 618
Query: 212 NQTGITWAEVLRCVAGCPGLEELYLESNNIFISERPTDVLQTVKLLDLSSNQLIDENQLY 271
+ G T VL + + EL L++ + L ++ LDL SN + ++
Sbjct: 619 HNDG-TKLLVLNSLKKMMNVAELELQNCELERIPHAIFSLSNLQELDLKSNNIRTIEEII 677
Query: 272 LIAHLPRLEQLILSDTGISSLHFPDAGIGCKTSMFPSLKYLVVNDNQISQWSFFNELEKL 331
HL RL L L I ++ PS+ ++ N S + N+LE L
Sbjct: 678 SFQHLKRLTCLKLWHNKIVTIP-------------PSITHV---KNLESLYFSNNKLESL 721
Query: 332 P----SLRALSCLRNPLTKEDKEAETARLLIIASIGQLKTL-------NKCEILPEE 377
P SL+ L CL D ++ I IG L+ L NK +ILP++
Sbjct: 722 PVAVFSLQKLRCL-------DVSYNNISMIPI-EIGLLQNLQHLHITGNKVDILPKQ 770
>gi|46852172 kinesin family member 13B [Homo sapiens]
Length = 1826
Score = 46.6 bits (109), Expect = 6e-05
Identities = 28/64 (43%), Positives = 36/64 (56%), Gaps = 4/64 (6%)
Query: 18 GEHAT--VRFAGVVPPVAGPWLGVEWDNPERGKHDGSHEGTVYFKCRHPTGGSFIRPNKV 75
G H T VR+ G G W+GVE D P GK+DGS G YF+C +P G +RP++V
Sbjct: 1710 GAHKTGVVRYVGPADFQEGTWVGVELDLPS-GKNDGSIGGKQYFRC-NPGYGLLVRPSRV 1767
Query: 76 NFGT 79
T
Sbjct: 1768 RRAT 1771
>gi|50428925 cytoskeleton associated protein 1 [Homo sapiens]
Length = 244
Score = 45.8 bits (107), Expect = 1e-04
Identities = 32/94 (34%), Positives = 43/94 (45%), Gaps = 21/94 (22%)
Query: 10 IGRRVEVNG-----EHATVRFAGVVPPVAGPWLGVEWDNPERGKHDGSHEGTVYFKCRHP 64
+G R EV TV + G+ G W+GV +D P GK+DGS G YF+C+
Sbjct: 161 VGSRCEVRAAGQSPRRGTVMYVGLTDFKPGYWIGVRYDEP-LGKNDGSVNGKRYFECQ-A 218
Query: 65 TGGSFIRPNKVNFGTDFLTAIKNRYVLEDGPEED 98
G+F++P V G D PEED
Sbjct: 219 KYGAFVKPAVVTVG--------------DFPEED 238
>gi|205277468 leucine rich repeat containing 15 isoform a [Homo
sapiens]
Length = 587
Score = 45.8 bits (107), Expect = 1e-04
Identities = 70/240 (29%), Positives = 108/240 (45%), Gaps = 27/240 (11%)
Query: 124 SQLSKLQEVSLRNCAVSCAGEKGGVAEACPNIRKVDLSKNLLSSWDEVIHIADQLRHLEV 183
SQ S L+E+ L + + G + + K++L KN L+ + L +L+V
Sbjct: 152 SQCSNLKELQLHGNHLEYIPD--GAFDHLVGLTKLNLGKNSLTHISP--RVFQHLGNLQV 207
Query: 184 LNVSENKLKFPSGSVLTGTLSVLKV-LVLNQTGITWAEVLRCVAGCPGLEELYLESNNIF 242
L + EN+L G +++ ++ L NQ G+ + L+ LYL +N+I
Sbjct: 208 LRLYENRLTDIPMGTFDGLVNLQELALQQNQIGLLSPGLFH---NNHNLQRLYLSNNHI- 263
Query: 243 ISERPTDV---LQTVKLLDLSSNQLIDENQLYLIAHLPRLEQLILSDTGISSLHFPDAGI 299
S+ P + L + L L N L E L + +P L +L L D ISSL PD
Sbjct: 264 -SQLPPSIFMQLPQLNRLTLFGNSL-KELSLGIFGPMPNLRELWLYDNHISSL--PDNVF 319
Query: 300 GCKTSMFPSLKYLVVNDNQISQWS--FFNELEKLPSLRALSCLRNPLTKEDKEAETARLL 357
S L+ L+++ NQIS S FN L + LR LS N L +D + R+L
Sbjct: 320 ----SNLRQLQVLILSRNQISFISPGAFNGLTE---LRELSLHTNAL--QDLDGNVFRML 370
>gi|18677767 leucine rich repeat containing 15 isoform b [Homo
sapiens]
Length = 581
Score = 45.8 bits (107), Expect = 1e-04
Identities = 70/240 (29%), Positives = 108/240 (45%), Gaps = 27/240 (11%)
Query: 124 SQLSKLQEVSLRNCAVSCAGEKGGVAEACPNIRKVDLSKNLLSSWDEVIHIADQLRHLEV 183
SQ S L+E+ L + + G + + K++L KN L+ + L +L+V
Sbjct: 146 SQCSNLKELQLHGNHLEYIPD--GAFDHLVGLTKLNLGKNSLTHISP--RVFQHLGNLQV 201
Query: 184 LNVSENKLKFPSGSVLTGTLSVLKV-LVLNQTGITWAEVLRCVAGCPGLEELYLESNNIF 242
L + EN+L G +++ ++ L NQ G+ + L+ LYL +N+I
Sbjct: 202 LRLYENRLTDIPMGTFDGLVNLQELALQQNQIGLLSPGLFH---NNHNLQRLYLSNNHI- 257
Query: 243 ISERPTDV---LQTVKLLDLSSNQLIDENQLYLIAHLPRLEQLILSDTGISSLHFPDAGI 299
S+ P + L + L L N L E L + +P L +L L D ISSL PD
Sbjct: 258 -SQLPPSIFMQLPQLNRLTLFGNSL-KELSLGIFGPMPNLRELWLYDNHISSL--PDNVF 313
Query: 300 GCKTSMFPSLKYLVVNDNQISQWS--FFNELEKLPSLRALSCLRNPLTKEDKEAETARLL 357
S L+ L+++ NQIS S FN L + LR LS N L +D + R+L
Sbjct: 314 ----SNLRQLQVLILSRNQISFISPGAFNGLTE---LRELSLHTNAL--QDLDGNVFRML 364
>gi|205277392 dynactin 1 isoform 3 [Homo sapiens]
Length = 1253
Score = 45.1 bits (105), Expect = 2e-04
Identities = 34/114 (29%), Positives = 51/114 (44%), Gaps = 17/114 (14%)
Query: 10 IGRRVEV--NGEHATVRFAGVVPPVAGPWLGVEWDNPERGKHDGSHEGTVYFKCRHPTGG 67
+G RVEV G TV + G G W+GV D +GK+DG+ +G YF C G
Sbjct: 29 VGSRVEVIGKGHRGTVAYVGATLFATGKWVGVILDEA-KGKNDGTVQGRKYFTC-DEGHG 86
Query: 68 SFIRPNKVNFGTDFLTAIKNRYVLEDGPEEDRKEQIVTIGNKPVETIGFDSIMK 121
F+R +++ V EDG + E + +K ++ G D+ K
Sbjct: 87 IFVRQSQIQ-------------VFEDGADTTSPETPDSSASKVLKREGTDTTAK 127
>gi|13259510 dynactin 1 isoform 1 [Homo sapiens]
Length = 1278
Score = 45.1 bits (105), Expect = 2e-04
Identities = 34/114 (29%), Positives = 51/114 (44%), Gaps = 17/114 (14%)
Query: 10 IGRRVEV--NGEHATVRFAGVVPPVAGPWLGVEWDNPERGKHDGSHEGTVYFKCRHPTGG 67
+G RVEV G TV + G G W+GV D +GK+DG+ +G YF C G
Sbjct: 29 VGSRVEVIGKGHRGTVAYVGATLFATGKWVGVILDEA-KGKNDGTVQGRKYFTC-DEGHG 86
Query: 68 SFIRPNKVNFGTDFLTAIKNRYVLEDGPEEDRKEQIVTIGNKPVETIGFDSIMK 121
F+R +++ V EDG + E + +K ++ G D+ K
Sbjct: 87 IFVRQSQIQ-------------VFEDGADTTSPETPDSSASKVLKREGTDTTAK 127
>gi|116008447 CAP-GLY domain containing linker protein 2 isoform 1
[Homo sapiens]
Length = 1046
Score = 45.1 bits (105), Expect = 2e-04
Identities = 30/74 (40%), Positives = 40/74 (54%), Gaps = 3/74 (4%)
Query: 3 DTLTADVIGRRVEVNG-EHATVRFAGVVPPVAGPWLGVEWDNPERGKHDGSHEGTVYFKC 61
D L V+G RV VNG + V++ G G W GV D+P GK+DG+ G YF+C
Sbjct: 74 DFLGDFVVGERVWVNGVKPGVVQYLGETQFAPGQWAGVVLDDPV-GKNDGAVGGVRYFEC 132
Query: 62 RHPTGGSFIRPNKV 75
G F RP+K+
Sbjct: 133 -PALQGIFTRPSKL 145
Score = 43.5 bits (101), Expect = 5e-04
Identities = 29/67 (43%), Positives = 36/67 (53%), Gaps = 3/67 (4%)
Query: 10 IGRRVEVNG-EHATVRFAGVVPPVAGPWLGVEWDNPERGKHDGSHEGTVYFKCRHPTGGS 68
+G RV V G + VR+ G G W GVE D P GK+DG+ GT YF+C P G
Sbjct: 221 LGDRVLVGGTKTGVVRYVGETDFAKGEWCGVELDEP-LGKNDGAVAGTRYFQC-PPKFGL 278
Query: 69 FIRPNKV 75
F +KV
Sbjct: 279 FAPIHKV 285
>gi|14702162 CAP-GLY domain containing linker protein 2 isoform 2
[Homo sapiens]
Length = 1011
Score = 45.1 bits (105), Expect = 2e-04
Identities = 30/74 (40%), Positives = 40/74 (54%), Gaps = 3/74 (4%)
Query: 3 DTLTADVIGRRVEVNG-EHATVRFAGVVPPVAGPWLGVEWDNPERGKHDGSHEGTVYFKC 61
D L V+G RV VNG + V++ G G W GV D+P GK+DG+ G YF+C
Sbjct: 74 DFLGDFVVGERVWVNGVKPGVVQYLGETQFAPGQWAGVVLDDPV-GKNDGAVGGVRYFEC 132
Query: 62 RHPTGGSFIRPNKV 75
G F RP+K+
Sbjct: 133 -PALQGIFTRPSKL 145
Score = 43.5 bits (101), Expect = 5e-04
Identities = 29/67 (43%), Positives = 36/67 (53%), Gaps = 3/67 (4%)
Query: 10 IGRRVEVNG-EHATVRFAGVVPPVAGPWLGVEWDNPERGKHDGSHEGTVYFKCRHPTGGS 68
+G RV V G + VR+ G G W GVE D P GK+DG+ GT YF+C P G
Sbjct: 221 LGDRVLVGGTKTGVVRYVGETDFAKGEWCGVELDEP-LGKNDGAVAGTRYFQC-PPKFGL 278
Query: 69 FIRPNKV 75
F +KV
Sbjct: 279 FAPIHKV 285
>gi|52426787 oligodendrocyte myelin glycoprotein [Homo sapiens]
Length = 440
Score = 44.7 bits (104), Expect = 2e-04
Identities = 45/147 (30%), Positives = 77/147 (52%), Gaps = 17/147 (11%)
Query: 154 NIRKVDLSKNLLSSWDEVIHIADQLRHLEVLNVSENKLKFPSGSVLTGTLSVLKVLVLNQ 213
N++ +D+SKN+L ++V+ I + LR LEVLN+S NKL +V T S L ++ L+
Sbjct: 124 NLKYLDVSKNML---EKVVLIKNTLRSLEVLNLSSNKL----WTVPTNMPSKLHIVDLSN 176
Query: 214 TGITWAEVL-RCVAGCPGLEELYLESNNI-FISERPTDVLQTVKLLDLSSNQLI---DEN 268
+T ++L + L LYL +N FI ++ D L ++ + L +N+ +N
Sbjct: 177 NSLT--QILPGTLINLTNLTHLYLHNNKFTFIPDQSFDQLFQLQEITLYNNRWSCDHKQN 234
Query: 269 QLYLIAHLPRLEQLILS---DTGISSL 292
YL+ + + ++ T ISSL
Sbjct: 235 ITYLLKWMMETKAHVIGTPCSTQISSL 261
>gi|171184451 centrosome-associated protein 350 [Homo sapiens]
Length = 3117
Score = 44.7 bits (104), Expect = 2e-04
Identities = 26/68 (38%), Positives = 38/68 (55%), Gaps = 3/68 (4%)
Query: 10 IGRRVEV-NGEHATVRFAGVVPPVAGPWLGVEWDNPERGKHDGSHEGTVYFKCRHPTGGS 68
IG RV + N + +RF G G W GVE D PE G ++G+++G YF+C+ G
Sbjct: 2499 IGDRVLIGNVQPGILRFKGETSFAKGFWAGVELDKPE-GNNNGTYDGIAYFECKE-KHGI 2556
Query: 69 FIRPNKVN 76
F P K++
Sbjct: 2557 FAPPQKIS 2564
>gi|16904383 leucine rich repeat containing 7 [Homo sapiens]
Length = 1537
Score = 44.3 bits (103), Expect = 3e-04
Identities = 59/227 (25%), Positives = 96/227 (42%), Gaps = 53/227 (23%)
Query: 155 IRKVDLSKNLLSSWDEVIHIADQLRHLEVLNVSENKLKFPSGSVLTGTLSVLKVLVLNQT 214
+ ++DL N EV+ DQ+++L L + N L+ GS+ G L +L L +++
Sbjct: 186 LERLDLGNNEFGELPEVL---DQIQNLRELWMDNNALQVLPGSI--GKLKMLVYLDMSKN 240
Query: 215 GITWAEVLRCVAGCPGLEELYLESNNIFISERPTDVLQTVKLLDLSSNQLIDENQLYL-- 272
I ++ ++GC LE+L L SN + + P + KL L +D+NQL +
Sbjct: 241 RIETVDM--DISGCEALEDLLLSSN--MLQQLPDSIGLLKKLTTLK----VDDNQLTMLP 292
Query: 273 --IAHLPRLEQLILSDTGISSLHFPDAGIGCKTSMFPSLKYLVVNDNQISQWSFFNELEK 330
I +L LE+ S + SL PS +
Sbjct: 293 NTIGNLSLLEEFDCSCNELESL--------------PS------------------TIGY 320
Query: 331 LPSLRALSCLRNPLTKEDKEAETARLLIIASIGQLKTLNKCEILPEE 377
L SLR L+ N L + +E + + + + S+ NK E LPEE
Sbjct: 321 LHSLRTLAVDENFLPELPREIGSCKNVTVMSLRS----NKLEFLPEE 363
Score = 30.4 bits (67), Expect = 4.2
Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
Query: 231 LEELYLESNNIFISERPTDVLQTVKLLDLSSNQLIDENQLYLIAHLPRLEQLILSDTGIS 290
LEELYL++N I + Q ++ L + N L N IA L L++L +S G+
Sbjct: 48 LEELYLDANQIEELPKQLFNCQALRKLSIPDNDL--SNLPTTIASLVNLKELDISKNGVQ 105
Query: 291 SLHFPDAGIGCK 302
FP+ CK
Sbjct: 106 --EFPENIKCCK 115
>gi|50593002 small nuclear ribonucleoprotein polypeptide A' [Homo
sapiens]
Length = 255
Score = 43.5 bits (101), Expect = 5e-04
Identities = 41/150 (27%), Positives = 72/150 (48%), Gaps = 13/150 (8%)
Query: 233 ELYLESNNIFISERPTDVLQTVKLLDLSSNQLIDENQLYLIAHLPRLEQLILSDTGISSL 292
EL L I + E L +D S N++ +L L RL+ L++++ I +
Sbjct: 23 ELDLRGYKIPVIENLGATLDQFDAIDFSDNEI---RKLDGFPLLRRLKTLLVNNNRICRI 79
Query: 293 HFPDAGIGCKTSMFPSLKYLVVNDNQISQWSFFNELEKLPSLRALSCLRNPLTKEDKEAE 352
G G ++ P L L++ +N + + + L L SL LS LRNP+T + +
Sbjct: 80 -----GEGLDQAL-PCLTELILTNNSLVELGDLDPLASLKSLTYLSILRNPVTNK----K 129
Query: 353 TARLLIIASIGQLKTLNKCEILPEERRRAE 382
RL +I + Q++ L+ ++ +ER+ AE
Sbjct: 130 HYRLYVIYKVPQVRVLDFQKVKLKERQEAE 159
>gi|194394161 leucine rich repeat containing 57 [Homo sapiens]
Length = 239
Score = 42.0 bits (97), Expect = 0.001
Identities = 47/155 (30%), Positives = 76/155 (49%), Gaps = 16/155 (10%)
Query: 126 LSKLQEVSLRNCAVSCAGEKGGVAEACPNIRKVDLSKNLLSSWDEVIHIADQLRHLEVLN 185
L KL+ +SL N + G A ++ + LS N L + + LRHL+V++
Sbjct: 84 LKKLETLSLNNNHLRELPSTFGQLSA---LKTLSLSGNQLGALPPQLC---SLRHLDVMD 137
Query: 186 VSENKLKFPSGSVLTGTLSVLKVLVLNQTGITWAEVLRCVAGCPGLEELYLESNNIFISE 245
+S+N+++ SV G L V++ L LNQ I+ V ++ CP L+ L LE N + +S
Sbjct: 138 LSKNQIRSIPDSV--GELQVIE-LNLNQNQISQISVK--ISCCPRLKILRLEENCLELSM 192
Query: 246 RPTDVLQTVKLLDLSSNQLIDENQLYLIAHLPRLE 280
P +L ++ L+ E L+ I L LE
Sbjct: 193 LPQSILSDSQICLLAV-----EGNLFEIKKLRELE 222
>gi|150378449 X-ray radiation resistance associated 1 [Homo sapiens]
Length = 792
Score = 42.0 bits (97), Expect = 0.001
Identities = 40/129 (31%), Positives = 62/129 (48%), Gaps = 12/129 (9%)
Query: 229 PGLEELYLESNNIFISERPTDVLQTVKLLDLSSNQLIDENQLYLIAHLPRLEQLILSDTG 288
P L+EL L N I + ++ LDLS N L E + + LP L L+L+ G
Sbjct: 140 PALKELDLAFNGIKTIYVKYGDFKLLEFLDLSFNSLTVE-AICDLGILPHLRVLLLTGNG 198
Query: 289 ISSLH------FPDAGIGCKTSM-----FPSLKYLVVNDNQISQWSFFNELEKLPSLRAL 337
++SL +A + TS FP+L+ L+++DN++S S F L L L+ L
Sbjct: 199 LTSLPPNLAVAEQEASVTSLTSKRYILRFPALETLMLDDNRLSNPSCFASLAGLRRLKKL 258
Query: 338 SCLRNPLTK 346
S N + +
Sbjct: 259 SLDENRIIR 267
>gi|33285015 leucine rich repeat containing 28 [Homo sapiens]
Length = 367
Score = 41.6 bits (96), Expect = 0.002
Identities = 43/137 (31%), Positives = 59/137 (43%), Gaps = 30/137 (21%)
Query: 229 PGLEELYLESNNIFISERPTDVLQTVKLLDLSSNQL-----------------IDENQLY 271
P L ELYL SNNI + L ++ LDLS N L + NQL
Sbjct: 65 PNLVELYLHSNNIVVVPEAIGSLVKLQCLDLSDNALEIVCPEIGRLRALRHLRLANNQLQ 124
Query: 272 L----IAHLPRLEQLILSDTGISSLHFPDAGIGCKTSMFPSLKYLVVNDNQISQWSFFNE 327
+ L L+ L +S + +L P+ + M SL+YL V+ N++ W
Sbjct: 125 FLPPEVGDLKELQTLDISTNRLLTL--PE-----RLHMCLSLQYLTVDRNRL--WYVPRH 175
Query: 328 LEKLPSLRALSCLRNPL 344
L +LPSL LS N L
Sbjct: 176 LCQLPSLNELSMAGNRL 192
>gi|110825984 malignant fibrous histiocytoma amplified sequence 1
[Homo sapiens]
Length = 1052
Score = 41.2 bits (95), Expect = 0.002
Identities = 44/146 (30%), Positives = 72/146 (49%), Gaps = 9/146 (6%)
Query: 155 IRKVDLSKNLLSSWDEVIHIADQLRHLEVLNVSENKLKFPSGSVLTGTLSVLKVLVLNQT 214
+R +D+ N L+++ + QL LE L+VS N+L+ + L LK+L L+
Sbjct: 183 LRTLDVDHNQLTAFPRQLL---QLVALEELDVSSNRLRGLPEDI--SALRALKILWLSGA 237
Query: 215 GITWAEVLRCVAGCPGLEELYLESNNIFISERPTDVLQTVKLLDLSSNQLIDENQLYLIA 274
+ C LE L L++N + LQ +K+L+LSSN L +E L+
Sbjct: 238 ELGTLPAGFCELA--SLESLMLDNNGLQALPAQFSCLQRLKMLNLSSN-LFEEFPAALLP 294
Query: 275 HLPRLEQLILSDTGISSLHFPDAGIG 300
L LE+L LS ++S+ +G+G
Sbjct: 295 -LAGLEELYLSRNQLTSVPSLISGLG 319
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.136 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,661,743
Number of Sequences: 37866
Number of extensions: 930506
Number of successful extensions: 2632
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 113
Number of HSP's that attempted gapping in prelim test: 2448
Number of HSP's gapped (non-prelim): 241
length of query: 527
length of database: 18,247,518
effective HSP length: 107
effective length of query: 420
effective length of database: 14,195,856
effective search space: 5962259520
effective search space used: 5962259520
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.