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Search of human proteins with 239751835
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239751835 PREDICTED: chromosome 19 open reading frame 68
[Homo sapiens]
(578 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239757335 PREDICTED: chromosome 19 open reading frame 68 [Hom... 1190 0.0
gi|239751835 PREDICTED: chromosome 19 open reading frame 68 [Hom... 1190 0.0
gi|239746326 PREDICTED: hypothetical protein LOC374920 [Homo sap... 1190 0.0
gi|57863255 zinc finger, SWIM domain containing 3 [Homo sapiens] 39 0.010
gi|55770906 XPA binding protein 2 [Homo sapiens] 38 0.022
gi|4503509 eukaryotic translation initiation factor 3, subunit 1... 37 0.065
gi|78190492 retinitis pigmentosa GTPase regulator isoform C [Hom... 36 0.11
gi|169167211 PREDICTED: FRAS1 related extracellular matrix 3 [Ho... 35 0.14
gi|169166904 PREDICTED: FRAS1 related extracellular matrix 3 [Ho... 35 0.14
gi|169166334 PREDICTED: FRAS1 related extracellular matrix 3 [Ho... 35 0.14
gi|14249119 Rhox homeobox family, member 2 [Homo sapiens] 35 0.19
gi|153791494 Rhox homeobox family, member 2B [Homo sapiens] 34 0.32
gi|145386517 phostensin [Homo sapiens] 34 0.42
gi|199559805 phostensin [Homo sapiens] 34 0.42
gi|7657575 sirtuin 1 isoform a [Homo sapiens] 33 0.94
gi|217035164 coiled-coil domain containing 27 [Homo sapiens] 33 0.94
gi|239755454 PREDICTED: hypothetical protein [Homo sapiens] 32 1.2
gi|7657693 zinc finger protein 324 [Homo sapiens] 32 1.2
gi|223718074 hydroxysteroid (17-beta) dehydrogenase 1 [Homo sapi... 32 1.6
gi|239744258 PREDICTED: hypothetical protein LOC100128703 [Homo ... 32 1.6
gi|63252863 BTB (POZ) domain containing 12 [Homo sapiens] 32 2.1
gi|4506803 stem cell growth factor precursor [Homo sapiens] 31 2.7
gi|7656938 CREBBP/EP300 inhibitor 1 [Homo sapiens] 31 2.7
gi|42821112 serine/threonine protein kinase pim-2 [Homo sapiens] 31 2.7
gi|154759273 testis specific, 10 interacting protein [Homo sapiens] 31 2.7
gi|4507741 twist [Homo sapiens] 31 3.6
gi|117414137 retinitis pigmentosa 1-like 1 [Homo sapiens] 31 3.6
gi|116805334 Ras-induced senescence 1 [Homo sapiens] 31 3.6
gi|239756241 PREDICTED: golgi autoantigen, golgin subfamily a-li... 30 4.6
gi|4507321 suppressor of variegation 3-9 homolog 1 [Homo sapiens] 30 6.1
>gi|239757335 PREDICTED: chromosome 19 open reading frame 68 [Homo
sapiens]
Length = 578
Score = 1190 bits (3078), Expect = 0.0
Identities = 578/578 (100%), Positives = 578/578 (100%)
Query: 1 MHLARCRWASAPPLYTLIDVLKYSYVRLVCKDVRAPSRPAVGPPQPGCPAFIIVKLSPLR 60
MHLARCRWASAPPLYTLIDVLKYSYVRLVCKDVRAPSRPAVGPPQPGCPAFIIVKLSPLR
Sbjct: 1 MHLARCRWASAPPLYTLIDVLKYSYVRLVCKDVRAPSRPAVGPPQPGCPAFIIVKLSPLR 60
Query: 61 DRLVVTECQLTHSHPACPLEFAYYFRPGHLLANACLPVRTTNKISKQFVAPADVRRLLSY 120
DRLVVTECQLTHSHPACPLEFAYYFRPGHLLANACLPVRTTNKISKQFVAPADVRRLLSY
Sbjct: 61 DRLVVTECQLTHSHPACPLEFAYYFRPGHLLANACLPVRTTNKISKQFVAPADVRRLLSY 120
Query: 121 CKGRDHGVLDALHVLEGLFRTDPEAKVKLVFVEDQAVVETVFFLTSRTRALLRRFPRMLL 180
CKGRDHGVLDALHVLEGLFRTDPEAKVKLVFVEDQAVVETVFFLTSRTRALLRRFPRMLL
Sbjct: 121 CKGRDHGVLDALHVLEGLFRTDPEAKVKLVFVEDQAVVETVFFLTSRTRALLRRFPRMLL 180
Query: 181 VDRLPGLQGALDLLAVLCVDGSGRARQAACCVARPGTPSLLRFALASLLQSAPDVKGRVR 240
VDRLPGLQGALDLLAVLCVDGSGRARQAACCVARPGTPSLLRFALASLLQSAPDVKGRVR
Sbjct: 181 VDRLPGLQGALDLLAVLCVDGSGRARQAACCVARPGTPSLLRFALASLLQSAPDVKGRVR 240
Query: 241 CLTAGPEVAAQLPAVRQLLPCARVQICRAQGLETLFSKAQELGGAGREDPGLWSRLCRLA 300
CLTAGPEVAAQLPAVRQLLPCARVQICRAQGLETLFSKAQELGGAGREDPGLWSRLCRLA
Sbjct: 241 CLTAGPEVAAQLPAVRQLLPCARVQICRAQGLETLFSKAQELGGAGREDPGLWSRLCRLA 300
Query: 301 GASSPAAYDEALAELHAHGPAAFVDYFERNWEPRRDMWVRFRAFEAARDLDACALVRGHR 360
GASSPAAYDEALAELHAHGPAAFVDYFERNWEPRRDMWVRFRAFEAARDLDACALVRGHR
Sbjct: 301 GASSPAAYDEALAELHAHGPAAFVDYFERNWEPRRDMWVRFRAFEAARDLDACALVRGHR 360
Query: 361 RRLLRRLSPSRGVAQCLRDLVAMQWADAAGEAVPEGPDGGGPWLEDEPGRGAQGENERVR 420
RRLLRRLSPSRGVAQCLRDLVAMQWADAAGEAVPEGPDGGGPWLEDEPGRGAQGENERVR
Sbjct: 361 RRLLRRLSPSRGVAQCLRDLVAMQWADAAGEAVPEGPDGGGPWLEDEPGRGAQGENERVR 420
Query: 421 GLETGDWGGAPKEGSIWRGAQMEKEWARALETRDWGGAQFEGEKGRALQIRDWRGGRLEN 480
GLETGDWGGAPKEGSIWRGAQMEKEWARALETRDWGGAQFEGEKGRALQIRDWRGGRLEN
Sbjct: 421 GLETGDWGGAPKEGSIWRGAQMEKEWARALETRDWGGAQFEGEKGRALQIRDWRGGRLEN 480
Query: 481 QKPRGLEGGVLRGSKLEKGHLRGPEIRDWRGPQLEGEKDWGLEGYVWRGSQLEDQALRGL 540
QKPRGLEGGVLRGSKLEKGHLRGPEIRDWRGPQLEGEKDWGLEGYVWRGSQLEDQALRGL
Sbjct: 481 QKPRGLEGGVLRGSKLEKGHLRGPEIRDWRGPQLEGEKDWGLEGYVWRGSQLEDQALRGL 540
Query: 541 EGYTWRVAQLEDRRSTTDLRGTQFDYERRGKGESTEDR 578
EGYTWRVAQLEDRRSTTDLRGTQFDYERRGKGESTEDR
Sbjct: 541 EGYTWRVAQLEDRRSTTDLRGTQFDYERRGKGESTEDR 578
>gi|239751835 PREDICTED: chromosome 19 open reading frame 68 [Homo
sapiens]
Length = 578
Score = 1190 bits (3078), Expect = 0.0
Identities = 578/578 (100%), Positives = 578/578 (100%)
Query: 1 MHLARCRWASAPPLYTLIDVLKYSYVRLVCKDVRAPSRPAVGPPQPGCPAFIIVKLSPLR 60
MHLARCRWASAPPLYTLIDVLKYSYVRLVCKDVRAPSRPAVGPPQPGCPAFIIVKLSPLR
Sbjct: 1 MHLARCRWASAPPLYTLIDVLKYSYVRLVCKDVRAPSRPAVGPPQPGCPAFIIVKLSPLR 60
Query: 61 DRLVVTECQLTHSHPACPLEFAYYFRPGHLLANACLPVRTTNKISKQFVAPADVRRLLSY 120
DRLVVTECQLTHSHPACPLEFAYYFRPGHLLANACLPVRTTNKISKQFVAPADVRRLLSY
Sbjct: 61 DRLVVTECQLTHSHPACPLEFAYYFRPGHLLANACLPVRTTNKISKQFVAPADVRRLLSY 120
Query: 121 CKGRDHGVLDALHVLEGLFRTDPEAKVKLVFVEDQAVVETVFFLTSRTRALLRRFPRMLL 180
CKGRDHGVLDALHVLEGLFRTDPEAKVKLVFVEDQAVVETVFFLTSRTRALLRRFPRMLL
Sbjct: 121 CKGRDHGVLDALHVLEGLFRTDPEAKVKLVFVEDQAVVETVFFLTSRTRALLRRFPRMLL 180
Query: 181 VDRLPGLQGALDLLAVLCVDGSGRARQAACCVARPGTPSLLRFALASLLQSAPDVKGRVR 240
VDRLPGLQGALDLLAVLCVDGSGRARQAACCVARPGTPSLLRFALASLLQSAPDVKGRVR
Sbjct: 181 VDRLPGLQGALDLLAVLCVDGSGRARQAACCVARPGTPSLLRFALASLLQSAPDVKGRVR 240
Query: 241 CLTAGPEVAAQLPAVRQLLPCARVQICRAQGLETLFSKAQELGGAGREDPGLWSRLCRLA 300
CLTAGPEVAAQLPAVRQLLPCARVQICRAQGLETLFSKAQELGGAGREDPGLWSRLCRLA
Sbjct: 241 CLTAGPEVAAQLPAVRQLLPCARVQICRAQGLETLFSKAQELGGAGREDPGLWSRLCRLA 300
Query: 301 GASSPAAYDEALAELHAHGPAAFVDYFERNWEPRRDMWVRFRAFEAARDLDACALVRGHR 360
GASSPAAYDEALAELHAHGPAAFVDYFERNWEPRRDMWVRFRAFEAARDLDACALVRGHR
Sbjct: 301 GASSPAAYDEALAELHAHGPAAFVDYFERNWEPRRDMWVRFRAFEAARDLDACALVRGHR 360
Query: 361 RRLLRRLSPSRGVAQCLRDLVAMQWADAAGEAVPEGPDGGGPWLEDEPGRGAQGENERVR 420
RRLLRRLSPSRGVAQCLRDLVAMQWADAAGEAVPEGPDGGGPWLEDEPGRGAQGENERVR
Sbjct: 361 RRLLRRLSPSRGVAQCLRDLVAMQWADAAGEAVPEGPDGGGPWLEDEPGRGAQGENERVR 420
Query: 421 GLETGDWGGAPKEGSIWRGAQMEKEWARALETRDWGGAQFEGEKGRALQIRDWRGGRLEN 480
GLETGDWGGAPKEGSIWRGAQMEKEWARALETRDWGGAQFEGEKGRALQIRDWRGGRLEN
Sbjct: 421 GLETGDWGGAPKEGSIWRGAQMEKEWARALETRDWGGAQFEGEKGRALQIRDWRGGRLEN 480
Query: 481 QKPRGLEGGVLRGSKLEKGHLRGPEIRDWRGPQLEGEKDWGLEGYVWRGSQLEDQALRGL 540
QKPRGLEGGVLRGSKLEKGHLRGPEIRDWRGPQLEGEKDWGLEGYVWRGSQLEDQALRGL
Sbjct: 481 QKPRGLEGGVLRGSKLEKGHLRGPEIRDWRGPQLEGEKDWGLEGYVWRGSQLEDQALRGL 540
Query: 541 EGYTWRVAQLEDRRSTTDLRGTQFDYERRGKGESTEDR 578
EGYTWRVAQLEDRRSTTDLRGTQFDYERRGKGESTEDR
Sbjct: 541 EGYTWRVAQLEDRRSTTDLRGTQFDYERRGKGESTEDR 578
>gi|239746326 PREDICTED: hypothetical protein LOC374920 [Homo
sapiens]
Length = 578
Score = 1190 bits (3078), Expect = 0.0
Identities = 578/578 (100%), Positives = 578/578 (100%)
Query: 1 MHLARCRWASAPPLYTLIDVLKYSYVRLVCKDVRAPSRPAVGPPQPGCPAFIIVKLSPLR 60
MHLARCRWASAPPLYTLIDVLKYSYVRLVCKDVRAPSRPAVGPPQPGCPAFIIVKLSPLR
Sbjct: 1 MHLARCRWASAPPLYTLIDVLKYSYVRLVCKDVRAPSRPAVGPPQPGCPAFIIVKLSPLR 60
Query: 61 DRLVVTECQLTHSHPACPLEFAYYFRPGHLLANACLPVRTTNKISKQFVAPADVRRLLSY 120
DRLVVTECQLTHSHPACPLEFAYYFRPGHLLANACLPVRTTNKISKQFVAPADVRRLLSY
Sbjct: 61 DRLVVTECQLTHSHPACPLEFAYYFRPGHLLANACLPVRTTNKISKQFVAPADVRRLLSY 120
Query: 121 CKGRDHGVLDALHVLEGLFRTDPEAKVKLVFVEDQAVVETVFFLTSRTRALLRRFPRMLL 180
CKGRDHGVLDALHVLEGLFRTDPEAKVKLVFVEDQAVVETVFFLTSRTRALLRRFPRMLL
Sbjct: 121 CKGRDHGVLDALHVLEGLFRTDPEAKVKLVFVEDQAVVETVFFLTSRTRALLRRFPRMLL 180
Query: 181 VDRLPGLQGALDLLAVLCVDGSGRARQAACCVARPGTPSLLRFALASLLQSAPDVKGRVR 240
VDRLPGLQGALDLLAVLCVDGSGRARQAACCVARPGTPSLLRFALASLLQSAPDVKGRVR
Sbjct: 181 VDRLPGLQGALDLLAVLCVDGSGRARQAACCVARPGTPSLLRFALASLLQSAPDVKGRVR 240
Query: 241 CLTAGPEVAAQLPAVRQLLPCARVQICRAQGLETLFSKAQELGGAGREDPGLWSRLCRLA 300
CLTAGPEVAAQLPAVRQLLPCARVQICRAQGLETLFSKAQELGGAGREDPGLWSRLCRLA
Sbjct: 241 CLTAGPEVAAQLPAVRQLLPCARVQICRAQGLETLFSKAQELGGAGREDPGLWSRLCRLA 300
Query: 301 GASSPAAYDEALAELHAHGPAAFVDYFERNWEPRRDMWVRFRAFEAARDLDACALVRGHR 360
GASSPAAYDEALAELHAHGPAAFVDYFERNWEPRRDMWVRFRAFEAARDLDACALVRGHR
Sbjct: 301 GASSPAAYDEALAELHAHGPAAFVDYFERNWEPRRDMWVRFRAFEAARDLDACALVRGHR 360
Query: 361 RRLLRRLSPSRGVAQCLRDLVAMQWADAAGEAVPEGPDGGGPWLEDEPGRGAQGENERVR 420
RRLLRRLSPSRGVAQCLRDLVAMQWADAAGEAVPEGPDGGGPWLEDEPGRGAQGENERVR
Sbjct: 361 RRLLRRLSPSRGVAQCLRDLVAMQWADAAGEAVPEGPDGGGPWLEDEPGRGAQGENERVR 420
Query: 421 GLETGDWGGAPKEGSIWRGAQMEKEWARALETRDWGGAQFEGEKGRALQIRDWRGGRLEN 480
GLETGDWGGAPKEGSIWRGAQMEKEWARALETRDWGGAQFEGEKGRALQIRDWRGGRLEN
Sbjct: 421 GLETGDWGGAPKEGSIWRGAQMEKEWARALETRDWGGAQFEGEKGRALQIRDWRGGRLEN 480
Query: 481 QKPRGLEGGVLRGSKLEKGHLRGPEIRDWRGPQLEGEKDWGLEGYVWRGSQLEDQALRGL 540
QKPRGLEGGVLRGSKLEKGHLRGPEIRDWRGPQLEGEKDWGLEGYVWRGSQLEDQALRGL
Sbjct: 481 QKPRGLEGGVLRGSKLEKGHLRGPEIRDWRGPQLEGEKDWGLEGYVWRGSQLEDQALRGL 540
Query: 541 EGYTWRVAQLEDRRSTTDLRGTQFDYERRGKGESTEDR 578
EGYTWRVAQLEDRRSTTDLRGTQFDYERRGKGESTEDR
Sbjct: 541 EGYTWRVAQLEDRRSTTDLRGTQFDYERRGKGESTEDR 578
>gi|57863255 zinc finger, SWIM domain containing 3 [Homo sapiens]
Length = 696
Score = 39.3 bits (90), Expect = 0.010
Identities = 45/186 (24%), Positives = 75/186 (40%), Gaps = 19/186 (10%)
Query: 19 DVLKYSYVRLVCKDVRAPSRPAVGPPQPGCPAFIIVKLSPLRDRLVVTECQLTHSHPACP 78
D+L Y V+ VC +R S CPA+++++ + DRL ++E H H
Sbjct: 50 DIL-YVQVKFVC--IRTQSNRKRTREADMCPAYLLLRYNERLDRLFISELNTQHIHGDSK 106
Query: 79 LEFAYYFRPGHLLANACL----PVRTTNK-----ISKQFVAPA-DVRRLLSYCKGRDHGV 128
+ G CL PV+ T K K V P+ + ++ K G+
Sbjct: 107 VASPGGDTTGKSQKTMCLQRLQPVQPTTKKDLDTAEKSLVEPSFCLDKVQVSSKPEQEGI 166
Query: 129 LDA-----LHVLEGLFRTDPEAKVKLVFVEDQAVVETVFFLTSRTRALLRRFPRMLLVDR 183
+ V++ + D E + V D ++ + F +S+ L RFP LL+ R
Sbjct: 167 TPSDLAKIAKVMKNFLKVD-EGSMASFSVGDSQHLDRLSFQSSKMTDLFIRFPENLLLHR 225
Query: 184 LPGLQG 189
+ QG
Sbjct: 226 VENTQG 231
>gi|55770906 XPA binding protein 2 [Homo sapiens]
Length = 855
Score = 38.1 bits (87), Expect = 0.022
Identities = 36/133 (27%), Positives = 54/133 (40%), Gaps = 4/133 (3%)
Query: 218 PSLLRFALASLLQSAPDVKGRVRCLTAGPEVAAQLPAVRQLLPCARVQICRAQGLETLFS 277
P LRF + L V+G R L PE A + + L R+ AQ L T+ +
Sbjct: 150 PLYLRFLRSHPLPETA-VRGYRRFLKLSPESAEEY--IEYLKSSDRLDEA-AQRLATVVN 205
Query: 278 KAQELGGAGREDPGLWSRLCRLAGASSPAAYDEALAELHAHGPAAFVDYFERNWEPRRDM 337
+ + AG+ + LW LC L + + + G F D + W D
Sbjct: 206 DERFVSKAGKSNYQLWHELCDLISQNPDKVQSLNVDAIIRGGLTRFTDQLGKLWCSLADY 265
Query: 338 WVRFRAFEAARDL 350
++R FE ARD+
Sbjct: 266 YIRSGHFEKARDV 278
>gi|4503509 eukaryotic translation initiation factor 3, subunit 10
theta, 150/170kDa [Homo sapiens]
Length = 1382
Score = 36.6 bits (83), Expect = 0.065
Identities = 49/182 (26%), Positives = 74/182 (40%), Gaps = 34/182 (18%)
Query: 427 WGGAPKEGSIWRGAQMEKEWARALETRDW--GGAQFEGEKGRALQIRDWRGGRLENQKP- 483
WG EG+ +G + + EW R ++W G + E R + R R G E+++P
Sbjct: 890 WGDRDSEGTWRKGPEADSEWRRGPPEKEWRRGEGRDEDRSHRRDEERPRRLGDDEDREPS 949
Query: 484 -RGLEGGV-LRGSKLEKGHLRGPE------------------IRDWRGPQLEGEKDWGLE 523
R + V RG ++G RGPE D R P+ ++D G
Sbjct: 950 LRPDDDRVPRRGMDDDRGPRRGPEEDRFSRRGADDDRPSWRNTDDDRPPRRIADEDRG-- 1007
Query: 524 GYVWRGSQLEDQALRGL--EGYTWRVAQLE--DRRSTTDLRGTQ---FDYERRGKGESTE 576
WR + + RGL + +WR A + RR D RG + D ER + +
Sbjct: 1008 --NWRHADDDRPPRRGLDEDRGSWRTADEDRGPRRGMDDDRGPRRGGADDERSSWRNADD 1065
Query: 577 DR 578
DR
Sbjct: 1066 DR 1067
>gi|78190492 retinitis pigmentosa GTPase regulator isoform C [Homo
sapiens]
Length = 1152
Score = 35.8 bits (81), Expect = 0.11
Identities = 51/208 (24%), Positives = 76/208 (36%), Gaps = 32/208 (15%)
Query: 387 DAAGEAVPEGPDGGGPWLEDEPGRG-----AQGENERV----RGLETGDWGGAPKEGSIW 437
+ GE EG G E+E G G +GE E +G E G+ G E
Sbjct: 882 EGEGEGEEEGEGEG----EEEEGEGEGEEEGEGEGEEEEGEGKGEEEGEEGEGEGEEEEG 937
Query: 438 RGAQMEKEWARALETRDWGGAQFEGEKGRALQIRDWRG-----------GRLENQKPRGL 486
G + E E +W G + EGE G + + G G E ++ G
Sbjct: 938 EGEGEDGEGEGEEEEGEWEGEEEEGE-GEGEEEGEGEGEEGEGEGEEEEGEGEGEEEEGE 996
Query: 487 EGGVLRGSKLEKGHLRGPEIRDWRGPQLEGEKDWGLEGYVWRGSQLEDQALRGLEGYTWR 546
E G G E+G G E + EGE + +EG G E++ E
Sbjct: 997 EEGEEEGEGEEEGEGEGEE-------EEEGEVEGEVEGEEGEGEGEEEEGEEEGEEREKE 1049
Query: 547 VAQLEDRRSTTDLRGTQFDYERRGKGES 574
E+RR+ + + Y+ G+ E+
Sbjct: 1050 GEGEENRRNREEEEEEEGKYQETGEEEN 1077
Score = 34.7 bits (78), Expect = 0.25
Identities = 44/163 (26%), Positives = 64/163 (39%), Gaps = 20/163 (12%)
Query: 387 DAAGEAVPEGPDGGGPWLEDEPGRGAQGENE------RVRGLETGDWGGAPKEGSIWRGA 440
+ GE E +G G E+E G G + E E +G E G+ G +EG G
Sbjct: 821 EGKGEREEEEEEGEG---EEEEGEGEEEEGEGEEEEGEGKGEEEGEEGEGEEEGEEGEGE 877
Query: 441 QMEKEWARALETRDWGGAQFEGEKGRALQIRDWRG-GRLENQKPRGLEGGVLRGSKLEKG 499
E+E E + G + E E+G + G G E + +G E G E+G
Sbjct: 878 GEEEEGEG--EGEEEGEGEGEEEEGEGEGEEEGEGEGEEEEGEGKGEEEG-------EEG 928
Query: 500 HLRGPEIRDWRGPQLEGEKDWGLEGYVWRGSQLEDQALRGLEG 542
G E + G +GE + E W G + E + EG
Sbjct: 929 EGEGEE-EEGEGEGEDGEGEGEEEEGEWEGEEEEGEGEGEEEG 970
Score = 33.9 bits (76), Expect = 0.42
Identities = 35/117 (29%), Positives = 51/117 (43%), Gaps = 11/117 (9%)
Query: 405 EDEPGRGAQGENERVRGLETGDWGGAPKEGSIWRGAQMEKEWARALETRDWGGAQFEGEK 464
E+E G G + E +R E G EG G + ++E R E R G + +GE
Sbjct: 732 EEEHGEGEEEEGDREEEEEKEGEGKEEGEGEEVEGEREKEEGERKKEER--AGKEEKGE- 788
Query: 465 GRALQIRDWRGGRLENQKPRG---LEGGVLRGSKLEKGH-LRGPEIRDWRGPQLEGE 517
+ D G E + RG EGG + G ++E+G R E + G + EGE
Sbjct: 789 ----EEGDQGEGEEEETEGRGEEKEEGGEVEGGEVEEGKGEREEEEEEGEGEEEEGE 841
>gi|169167211 PREDICTED: FRAS1 related extracellular matrix 3 [Homo
sapiens]
Length = 2139
Score = 35.4 bits (80), Expect = 0.14
Identities = 34/106 (32%), Positives = 44/106 (41%), Gaps = 13/106 (12%)
Query: 216 GTPSLLRFALASLLQSAPDVKGRVRCLTAGPEVAAQLPA-------------VRQLLPCA 262
GTP L ALA LL S P ++GR L P+ A LPA V P
Sbjct: 10 GTPRQLLVALACLLLSRPALQGRASSLGTEPDPALYLPARGALDGTRPDGPSVLIANPGL 69
Query: 263 RVQICRAQGLETLFSKAQELGGAGREDPGLWSRLCRLAGASSPAAY 308
RV + R+ L+ L + R + + L RL GA SP +
Sbjct: 70 RVPLGRSLWLDPLRDLVIGVQPGDRCEVTVLDALPRLKGALSPRRF 115
>gi|169166904 PREDICTED: FRAS1 related extracellular matrix 3 [Homo
sapiens]
Length = 2139
Score = 35.4 bits (80), Expect = 0.14
Identities = 34/106 (32%), Positives = 44/106 (41%), Gaps = 13/106 (12%)
Query: 216 GTPSLLRFALASLLQSAPDVKGRVRCLTAGPEVAAQLPA-------------VRQLLPCA 262
GTP L ALA LL S P ++GR L P+ A LPA V P
Sbjct: 10 GTPRQLLVALACLLLSRPALQGRASSLGTEPDPALYLPARGALDGTRPDGPSVLIANPGL 69
Query: 263 RVQICRAQGLETLFSKAQELGGAGREDPGLWSRLCRLAGASSPAAY 308
RV + R+ L+ L + R + + L RL GA SP +
Sbjct: 70 RVPLGRSLWLDPLRDLVIGVQPGDRCEVTVLDALPRLKGALSPRRF 115
>gi|169166334 PREDICTED: FRAS1 related extracellular matrix 3 [Homo
sapiens]
Length = 2139
Score = 35.4 bits (80), Expect = 0.14
Identities = 34/106 (32%), Positives = 44/106 (41%), Gaps = 13/106 (12%)
Query: 216 GTPSLLRFALASLLQSAPDVKGRVRCLTAGPEVAAQLPA-------------VRQLLPCA 262
GTP L ALA LL S P ++GR L P+ A LPA V P
Sbjct: 10 GTPRQLLVALACLLLSRPALQGRASSLGTEPDPALYLPARGALDGTRPDGPSVLIANPGL 69
Query: 263 RVQICRAQGLETLFSKAQELGGAGREDPGLWSRLCRLAGASSPAAY 308
RV + R+ L+ L + R + + L RL GA SP +
Sbjct: 70 RVPLGRSLWLDPLRDLVIGVQPGDRCEVTVLDALPRLKGALSPRRF 115
>gi|14249119 Rhox homeobox family, member 2 [Homo sapiens]
Length = 288
Score = 35.0 bits (79), Expect = 0.19
Identities = 42/155 (27%), Positives = 63/155 (40%), Gaps = 28/155 (18%)
Query: 367 LSPSRGVAQCLRDLVAM------QWADAAGEAVPEGPDGGGPWLEDEPGRGAQGENERVR 420
LSP+ + L+D+ AM + + +A PE P+ G E GAQG E+
Sbjct: 15 LSPAVDDEKELQDMNAMVLSLTEEVKEEEEDAQPE-PEQGTAAGEKLKSAGAQGGEEKDG 73
Query: 421 GLETGDWGGAPKEGSIWRGAQMEKEWARALETRDWGGAQFEGEKGRALQIRDWRGGRLEN 480
G E D GGA G +W G + E + Q E E G+ +
Sbjct: 74 GGEEKDGGGAGVPGHLWEG---DLEGTSGSDGNVEDSDQSEKEPGQ------------QY 118
Query: 481 QKPRGLEGGVLRGSKLEKGHLRGPEIRDWRGPQLE 515
+P+G GG LE G+ + P + + QL+
Sbjct: 119 SRPQGAVGG------LEPGNAQQPNVHAFTPLQLQ 147
>gi|153791494 Rhox homeobox family, member 2B [Homo sapiens]
Length = 288
Score = 34.3 bits (77), Expect = 0.32
Identities = 42/155 (27%), Positives = 62/155 (40%), Gaps = 28/155 (18%)
Query: 367 LSPSRGVAQCLRDLVAM------QWADAAGEAVPEGPDGGGPWLEDEPGRGAQGENERVR 420
LSP+ + L+D+ AM + + +A PE P+ G E GAQG E+
Sbjct: 15 LSPAVDDEKELQDMNAMVLSLTEEVKEEEEDAQPE-PEQGTAAGEKLKSAGAQGGEEKDG 73
Query: 421 GLETGDWGGAPKEGSIWRGAQMEKEWARALETRDWGGAQFEGEKGRALQIRDWRGGRLEN 480
G E D GGA G +W G E + Q E E G+ +
Sbjct: 74 GGEEKDGGGAGVPGHLWEG---NLEGTSGSDGNVEDSDQSEKEPGQ------------QY 118
Query: 481 QKPRGLEGGVLRGSKLEKGHLRGPEIRDWRGPQLE 515
+P+G GG LE G+ + P + + QL+
Sbjct: 119 SRPQGAVGG------LEPGNAQQPNVHAFTPLQLQ 147
>gi|145386517 phostensin [Homo sapiens]
Length = 613
Score = 33.9 bits (76), Expect = 0.42
Identities = 50/213 (23%), Positives = 86/213 (40%), Gaps = 21/213 (9%)
Query: 359 HRRRLLRRLSPSRGVAQCLRDLVAMQWADAAGEAVPEGPDGGGPWLEDEPGRGAQGENER 418
H+ R +R+ + Q + + + EA P G + D+ +G + ER
Sbjct: 86 HQNRFIRQERQQQQQQQQRSEELLAERKPGPLEARERRPSPGE--MRDQSPKGRESREER 143
Query: 419 VRGLETGDWGGAPKEGSIWRGAQMEKEWARALETRDWGGAQFEGEKG-RALQIRD-WRGG 476
+ ET +E + G E R LE RDW Q GE G R+ ++ + W+
Sbjct: 144 LSPRET-------RERRLGIGGAQELS-LRPLEARDW--RQSPGEVGDRSSRLSEAWKWR 193
Query: 477 RLENQKPRGLEGGVLRGSKLEKGHLRGPEIRDWRGPQLEGEKDWGL-EGYVWRGSQLE-- 533
+ P LR ++ + R E+ P + GL E + WR E
Sbjct: 194 LSPGETPERS----LRLAESREQSPRRKEVESRLSPGESAYQKLGLTEAHKWRPDSRESQ 249
Query: 534 DQALRGLEGYTWRVAQLEDRRSTTDLRGTQFDY 566
+Q+L LE WR+ E+R+ ++ G + ++
Sbjct: 250 EQSLVQLEATEWRLRSGEERQDYSEECGRKEEW 282
>gi|199559805 phostensin [Homo sapiens]
Length = 613
Score = 33.9 bits (76), Expect = 0.42
Identities = 50/213 (23%), Positives = 86/213 (40%), Gaps = 21/213 (9%)
Query: 359 HRRRLLRRLSPSRGVAQCLRDLVAMQWADAAGEAVPEGPDGGGPWLEDEPGRGAQGENER 418
H+ R +R+ + Q + + + EA P G + D+ +G + ER
Sbjct: 86 HQNRFIRQERQQQQQQQQRSEELLAERKPGPLEARERRPSPGE--MRDQSPKGRESREER 143
Query: 419 VRGLETGDWGGAPKEGSIWRGAQMEKEWARALETRDWGGAQFEGEKG-RALQIRD-WRGG 476
+ ET +E + G E R LE RDW Q GE G R+ ++ + W+
Sbjct: 144 LSPRET-------RERRLGIGGAQELS-LRPLEARDW--RQSPGEVGDRSSRLSEAWKWR 193
Query: 477 RLENQKPRGLEGGVLRGSKLEKGHLRGPEIRDWRGPQLEGEKDWGL-EGYVWRGSQLE-- 533
+ P LR ++ + R E+ P + GL E + WR E
Sbjct: 194 LSPGETPERS----LRLAESREQSPRRKEVESRLSPGESAYQKLGLTEAHKWRPDSRESQ 249
Query: 534 DQALRGLEGYTWRVAQLEDRRSTTDLRGTQFDY 566
+Q+L LE WR+ E+R+ ++ G + ++
Sbjct: 250 EQSLVQLEATEWRLRSGEERQDYSEECGRKEEW 282
>gi|7657575 sirtuin 1 isoform a [Homo sapiens]
Length = 747
Score = 32.7 bits (73), Expect = 0.94
Identities = 26/82 (31%), Positives = 33/82 (40%), Gaps = 3/82 (3%)
Query: 389 AGEAVPEGPDGGGPWLEDEPGR-GAQGENERVRGLETGDWGGAPKEGSIWRGAQMEKEWA 447
AGE + + P GP LE PG G V G G A ++WR A+ E A
Sbjct: 29 AGEPLRKRPRRDGPGLERSPGEPGGAAPEREVPAAARGCPGAA--AAALWREAEAEAAAA 86
Query: 448 RALETRDWGGAQFEGEKGRALQ 469
+ A EG+ G LQ
Sbjct: 87 GGEQEAQATAAAGEGDNGPGLQ 108
>gi|217035164 coiled-coil domain containing 27 [Homo sapiens]
Length = 656
Score = 32.7 bits (73), Expect = 0.94
Identities = 25/63 (39%), Positives = 31/63 (49%), Gaps = 7/63 (11%)
Query: 383 MQWADAAGEAVPEGPDGGGPWLEDEPGRGAQGENERVRGLETGDWGGAPKEGSIWRGAQM 442
MQ AA E E GGG EDE G +GE + V +TG WGG + GS+
Sbjct: 319 MQEESAAPERGKEPDLGGGE--EDE---GLEGEPDGVE--DTGAWGGVSQMGSVHEEGSE 371
Query: 443 EKE 445
E+E
Sbjct: 372 EEE 374
>gi|239755454 PREDICTED: hypothetical protein [Homo sapiens]
Length = 305
Score = 32.3 bits (72), Expect = 1.2
Identities = 52/189 (27%), Positives = 65/189 (34%), Gaps = 32/189 (16%)
Query: 367 LSPSRGVAQCLRDLVAMQWADAAGEAVPEGPDGGGPWLEDEPGRGAQGENERVRGLETGD 426
LS G R L ++ EA E + G PW E + R + E G+
Sbjct: 67 LSAKPGSVPAPRPLRSIDGEAGHSEAAGEKGECGIPWTEGQVWRPLERRASVASPGEKGE 126
Query: 427 WGGAPKEGSIWRGAQMEKEWARALETRDWGGAQFEGEKGRALQIR--------------D 472
G +EG +WR A E + G EG R L+ R
Sbjct: 127 CGVPWREGRVWRPLDRRGSVASPGEKGECGVPWREGGVWRPLERRASVASPGQKGECGVP 186
Query: 473 WRGGRLENQKPRGLEGGVLRGSKLEKGHLRGP--EIRDWR---------GPQLEGE--KD 519
WR G + +P G V S EKG P E R WR P +GE
Sbjct: 187 WREGGV--WRPLERRGSV--ASPGEKGECGVPWREGRVWRPLERRASVASPGQKGECGVP 242
Query: 520 WGLEGYVWR 528
W EG VWR
Sbjct: 243 W-REGAVWR 250
>gi|7657693 zinc finger protein 324 [Homo sapiens]
Length = 553
Score = 32.3 bits (72), Expect = 1.2
Identities = 30/97 (30%), Positives = 40/97 (41%), Gaps = 10/97 (10%)
Query: 225 LASLLQSAPDVKGRVRCLTAGPEVAAQLPAVRQLLPCARVQICRAQGLETLFSKAQEL-- 282
L S L+ V+ R + LT + Q + PCA+ R F AQ+L
Sbjct: 162 LTSPLRPPEGVRLREKTLTEHALLGRQPRTPERQKPCAQEVPGRT------FGSAQDLEA 215
Query: 283 -GGAGREDPG-LWSRLCRLAGASSPAAYDEALAELHA 317
GG G G +W RL G P+ +DE LHA
Sbjct: 216 AGGRGHHRMGAVWQEPHRLLGGQEPSTWDELGEALHA 252
>gi|223718074 hydroxysteroid (17-beta) dehydrogenase 1 [Homo
sapiens]
Length = 328
Score = 32.0 bits (71), Expect = 1.6
Identities = 16/30 (53%), Positives = 17/30 (56%)
Query: 388 AAGEAVPEGPDGGGPWLEDEPGRGAQGENE 417
A EA E G GP EDE GRGA G+ E
Sbjct: 290 AKAEAGAEAGGGAGPGAEDEAGRGAVGDPE 319
>gi|239744258 PREDICTED: hypothetical protein LOC100128703 [Homo
sapiens]
Length = 389
Score = 32.0 bits (71), Expect = 1.6
Identities = 52/189 (27%), Positives = 65/189 (34%), Gaps = 32/189 (16%)
Query: 367 LSPSRGVAQCLRDLVAMQWADAAGEAVPEGPDGGGPWLEDEPGRGAQGENERVRGLETGD 426
LS G R L ++ EA E + G PW E + R + E G+
Sbjct: 67 LSAKPGSVPAPRPLRSIDGEAGHSEAAGEKGECGIPWTEGQVWRPLERRASVASPGEKGE 126
Query: 427 WGGAPKEGSIWRGAQMEKEWARALETRDWGGAQFEGEKGRALQIR--------------D 472
G +EG +WR A E + G EG R L+ R
Sbjct: 127 CGVPWREGRVWRPLDRRGSVASPGEKGECGVPWREGGVWRPLERRASVASPGQKGECGVP 186
Query: 473 WRGGRLENQKPRGLEGGVLRGSKLEKGHLRGP--EIRDWR---------GPQLEGE--KD 519
WR G + +P G V S EKG P E R WR P +GE
Sbjct: 187 WREGGV--WRPLERRGSV--ASPGEKGECGVPWREGRVWRPLERRASVASPGQKGECGVP 242
Query: 520 WGLEGYVWR 528
W EG VWR
Sbjct: 243 W-REGPVWR 250
>gi|63252863 BTB (POZ) domain containing 12 [Homo sapiens]
Length = 1834
Score = 31.6 bits (70), Expect = 2.1
Identities = 25/85 (29%), Positives = 37/85 (43%), Gaps = 12/85 (14%)
Query: 415 ENERVRGL-ETGDW--GGAPKEGSIWRGAQMEKEWARALETRDWGGAQFEGEKGRALQIR 471
+ ER G E DW GG+P G + G Q++K+W + E E GR
Sbjct: 866 QEERAAGAGEDADWLEGGSPVSGQLLAGVQVQKQWDKVEEMEPL-------EPGRDEAAT 918
Query: 472 DW-RGGRLENQKPRGLEGGVLRGSK 495
W + G+ P+G G RG++
Sbjct: 919 TWEKMGQCALPPPQGQHSGA-RGAE 942
>gi|4506803 stem cell growth factor precursor [Homo sapiens]
Length = 323
Score = 31.2 bits (69), Expect = 2.7
Identities = 27/82 (32%), Positives = 38/82 (46%), Gaps = 18/82 (21%)
Query: 438 RGAQMEKEWARALETRDWGGAQFEGEKGRALQIRDWRGGRLENQKPRGLEGGVLRGSKLE 497
RGA E+EW WGGAQ E + AL ++ Q+ GL G RG +
Sbjct: 23 RGA--EREWEGG-----WGGAQEEEREREALMLK-------HLQEALGLPAG--RGDENP 66
Query: 498 KGHLRGPEIRDWRGPQLEGEKD 519
G + G E DW + +GE++
Sbjct: 67 AGTVEGKE--DWEMEEDQGEEE 86
>gi|7656938 CREBBP/EP300 inhibitor 1 [Homo sapiens]
Length = 187
Score = 31.2 bits (69), Expect = 2.7
Identities = 30/83 (36%), Positives = 38/83 (45%), Gaps = 8/83 (9%)
Query: 349 DLDACALVRGHRRRLLRRLSPSRGVAQCLRDLVAMQWADAAGEAVPEGPD--GGGPWLED 406
DL + G R LR PSR AQ L + M+ +A A PEG GP +
Sbjct: 27 DLPQMEVGSGSRELSLR---PSRSGAQQLEEEGPMEEEEAQPMAAPEGKRSLANGPNAGE 83
Query: 407 EPGR--GAQGENERVRGLETGDW 427
+PG+ GA E+E G E DW
Sbjct: 84 QPGQVAGADFESED-EGEEFDDW 105
>gi|42821112 serine/threonine protein kinase pim-2 [Homo sapiens]
Length = 311
Score = 31.2 bits (69), Expect = 2.7
Identities = 19/59 (32%), Positives = 24/59 (40%), Gaps = 7/59 (11%)
Query: 344 FEAARDLDACALVRGHRRRLLRRLSPSRGVAQCLRDLVAMQWADAAGEAVPEGPDGGGP 402
F A D CAL+R R L+P L +++ W E VP P GGP
Sbjct: 251 FPAHVSPDCCALIR-------RCLAPKPSSRPSLEEILLDPWMQTPAEDVPLNPSKGGP 302
>gi|154759273 testis specific, 10 interacting protein [Homo sapiens]
Length = 556
Score = 31.2 bits (69), Expect = 2.7
Identities = 34/135 (25%), Positives = 54/135 (40%), Gaps = 8/135 (5%)
Query: 389 AGEAVPEGPDGGGPWLEDEPGRGAQGENERVRGLETGDWGGAPKEGSIWRGAQMEKEWAR 448
+G +P G G + + + G E RGL +G P+ GSI E++++
Sbjct: 196 SGLQLPGRRPGSGSASDKQVQLQSLGAEEAERGLSSGVLPQRPRRGSI----SEEEQFSE 251
Query: 449 ALETRDWGGAQFEGEKGRALQIRDWRGGRLENQKPRGLEGGVLRGSKLEKGHLRGPEIRD 508
A E + G + + Q + G E G G +GS +LR + R
Sbjct: 252 ATEEAEEGEHRTPCRRRAGCQRKGQISG--EEASDEGEVQGQSQGSSPSFNNLRRRQWRK 309
Query: 509 WRGPQLEGEKDWGLE 523
R +L+G W LE
Sbjct: 310 TRAKELQG--PWDLE 322
>gi|4507741 twist [Homo sapiens]
Length = 202
Score = 30.8 bits (68), Expect = 3.6
Identities = 20/47 (42%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
Query: 388 AAGEAVPEGPDGGGPWLEDEPGRGAQGENERVRGLETGDWGGAPKEG 434
A G A P G GGG DEPG AQG+ RG ++ GG G
Sbjct: 46 AGGGAGPGGAAGGGVGGGDEPGSPAQGK----RGKKSAGCGGGGGAG 88
>gi|117414137 retinitis pigmentosa 1-like 1 [Homo sapiens]
Length = 2400
Score = 30.8 bits (68), Expect = 3.6
Identities = 50/232 (21%), Positives = 81/232 (34%), Gaps = 36/232 (15%)
Query: 381 VAMQWADAAGEAVPEG--------------------PDGGG----PWLEDEPGRGAQGEN 416
V ++ +A GEA PE P+ G P E E + +GE
Sbjct: 1982 VEVETQEAEGEAQPESEDVEAPEAEGEMQEAEEEAQPESDGVEAQPKSEGEEAQEVEGET 2041
Query: 417 ERVRGLETGDWGG-----APKEGSIWRGAQMEKEWARALETRDWGGAQFEGEKGRALQIR 471
++ G + G A +E G E E E+ D + EGE +
Sbjct: 2042 QKTEGDAQPESDGVEAPEAEEEAQEAEGEVQEAEGEAHPESEDVDAQEAEGEAQPESEGV 2101
Query: 472 DWRGGRLENQKPRGLEGGVLRG-SKLEKGHLRGPEIRDWRGPQLEGEKDWGLEGYVW--- 527
+ E QK G+E G ++ E + PE P+ EG + EG
Sbjct: 2102 EAPEAEGEAQKAEGIEAPETEGEAQPESEGIEAPEAEGEAQPESEGVEAQDAEGEAQPES 2161
Query: 528 ---RGSQLEDQALRGLEGYTWRVAQLEDRRSTTDLRGTQFDYERRGKGESTE 576
+ E++A LEG A+ E + + + + + E + + E E
Sbjct: 2162 EGIEAQEAEEEAQPELEGVEAPEAEGEAQPESEGIEAPEAEGEAQPELEGVE 2213
Score = 30.0 bits (66), Expect = 6.1
Identities = 30/85 (35%), Positives = 39/85 (45%), Gaps = 10/85 (11%)
Query: 387 DAAGEAVPEGPDGGGPWLEDEPGRGAQGENERVRGLETGDWGGAPK-EGS----IWRGAQ 441
+A GEA PE D P E E AQ E+E V E +W P+ EG+ + AQ
Sbjct: 1862 EAEGEAQPESEDVEAPEAEGE----AQPESEDVETPE-AEWEVQPESEGAEAPEAEKEAQ 1916
Query: 442 MEKEWARALETRDWGGAQFEGEKGR 466
E E ALET + EG + +
Sbjct: 1917 PETESVEALETEGEDEPESEGAEAQ 1941
>gi|116805334 Ras-induced senescence 1 [Homo sapiens]
Length = 300
Score = 30.8 bits (68), Expect = 3.6
Identities = 32/103 (31%), Positives = 37/103 (35%), Gaps = 10/103 (9%)
Query: 309 DEALAELHAHGPAAFVDYFERNWEPRRDMWVRFRAFEAARDLD---ACALVRGHRRRLLR 365
D L +AHG A F F R P + A A +DL C VRG R LR
Sbjct: 99 DLLLFSTNAHGRAFFAAAFHRVGPPLLIEHLGLAAGGAQQDLRLCVGCGWVRGRRTGRLR 158
Query: 366 RLSPSRGVAQCLRDLVAMQWADAAGEAVPEGPDGGGPWLEDEP 408
+ A A A A A P G WL+ EP
Sbjct: 159 PAAAPSAAA-------ATAGAPTALPAYPAAEPPGPLWLQGEP 194
>gi|239756241 PREDICTED: golgi autoantigen, golgin subfamily a-like
[Homo sapiens]
Length = 899
Score = 30.4 bits (67), Expect = 4.6
Identities = 27/89 (30%), Positives = 44/89 (49%), Gaps = 19/89 (21%)
Query: 405 EDEPGRGAQ----GENERVRGLETGDWGGAPKEGSIWRGAQMEKEWARALETRDWGGAQF 460
++E RG + G+ E++RG E WG +E +W Q EK W + E + WG +
Sbjct: 799 QEEKMRGQEEKMRGQEEKMRGQEEKMWG---QEEKMW--GQEEKMWGQ--EEKMWGQEEK 851
Query: 461 EGEK--GRALQIRDWRGGRLENQKPRGLE 487
EK G+ ++R+ + +K RG E
Sbjct: 852 MEEKMQGQEEKMRE------QEEKMRGQE 874
>gi|4507321 suppressor of variegation 3-9 homolog 1 [Homo sapiens]
Length = 412
Score = 30.0 bits (66), Expect = 6.1
Identities = 27/92 (29%), Positives = 38/92 (41%), Gaps = 17/92 (18%)
Query: 296 LCRLAGASSPAA-------YDEALAELHAHGPAAFVDYF----------ERNWEPRRDMW 338
LCRLA S PA YD + L + +Y+ E WEPR+++
Sbjct: 22 LCRLAKLSCPALGISKRNLYDFEVEYLCDYKKIREQEYYLVKWRGYPDSESTWEPRQNLK 81
Query: 339 VRFRAFEAARDLDACALVRGHRRRLLRRLSPS 370
+ +DL+ L R HR + R L PS
Sbjct: 82 CVRILKQFHKDLERELLRRHHRSKTPRHLDPS 113
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.322 0.139 0.443
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,182,308
Number of Sequences: 37866
Number of extensions: 1282678
Number of successful extensions: 3436
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 3315
Number of HSP's gapped (non-prelim): 58
length of query: 578
length of database: 18,247,518
effective HSP length: 108
effective length of query: 470
effective length of database: 14,157,990
effective search space: 6654255300
effective search space used: 6654255300
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 65 (29.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.