Search of human proteins with 239751603

Search of human proteins with 239751603

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239751603 PREDICTED: hypothetical protein XP_002347927 [Homo
sapiens]
         (160 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239757097 PREDICTED: hypothetical protein [Homo sapiens]           345   1e-95
gi|239751603 PREDICTED: hypothetical protein XP_002347927 [Homo ...   345   1e-95
gi|239746120 PREDICTED: hypothetical protein XP_002344194 [Homo ...   345   1e-95
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]        37   0.009
gi|239754489 PREDICTED: hypothetical protein [Homo sapiens]            36   0.016
gi|239743069 PREDICTED: hypothetical protein XP_002342750 [Homo ...    36   0.016
gi|239508715 PREDICTED: hypothetical protein [Homo sapiens]            36   0.016
gi|239753721 PREDICTED: hypothetical protein [Homo sapiens]            35   0.027
gi|239748254 PREDICTED: hypothetical protein XP_002346600 [Homo ...    35   0.027
gi|239742155 PREDICTED: hypothetical protein XP_002342442 [Homo ...    35   0.027
gi|239757272 PREDICTED: hypothetical protein [Homo sapiens]            35   0.036
gi|239751775 PREDICTED: hypothetical protein [Homo sapiens]            35   0.036
gi|239746270 PREDICTED: hypothetical protein XP_002343719 [Homo ...    35   0.036
gi|239747677 PREDICTED: hypothetical protein [Homo sapiens]            34   0.047
gi|239741546 PREDICTED: hypothetical protein XP_002342233 [Homo ...    34   0.047
gi|42821110 hypothetical protein LOC340602 [Homo sapiens]              34   0.061
gi|239757607 PREDICTED: hypothetical protein [Homo sapiens]            33   0.10 
gi|169208819 PREDICTED: similar to kinase D-interacting substrat...    33   0.10 
gi|239752118 PREDICTED: hypothetical protein XP_002348116 [Homo ...    33   0.10 
gi|169208593 PREDICTED: similar to kinase D-interacting substrat...    33   0.10 
gi|239746620 PREDICTED: hypothetical protein XP_002344228 [Homo ...    33   0.10 
gi|169208169 PREDICTED: similar to kinase D-interacting substrat...    33   0.10 
gi|92859641 thymidine kinase 2, mitochondrial [Homo sapiens]           33   0.14 
gi|194272140 dendrin [Homo sapiens]                                    33   0.14 
gi|55770862 thyroglobulin [Homo sapiens]                               32   0.18 
gi|239755326 PREDICTED: hypothetical protein [Homo sapiens]            32   0.18 
gi|34452723 gamma-aminobutyric acid A receptor, alpha 4 precurso...    32   0.18 
gi|24307919 small nuclear ribonucleoprotein 27kDa (U4/U6.U5) [Ho...    32   0.18 
gi|108773804 Fraser syndrome 1 [Homo sapiens]                          32   0.18 
gi|15055543 splicing factor, arginine/serine-rich 2B [Homo sapiens]    32   0.18 

>gi|239757097 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 160

 Score =  345 bits (884), Expect = 1e-95
 Identities = 160/160 (100%), Positives = 160/160 (100%)

Query: 1   MLCPYRMMLSGLMPVALTWCAGPARRRRCRHRGSSRKACPSWHRSRSSRRRRCCSGGGSP 60
           MLCPYRMMLSGLMPVALTWCAGPARRRRCRHRGSSRKACPSWHRSRSSRRRRCCSGGGSP
Sbjct: 1   MLCPYRMMLSGLMPVALTWCAGPARRRRCRHRGSSRKACPSWHRSRSSRRRRCCSGGGSP 60

Query: 61  GQCRSCSSGPGPRHCRARRGPSAHLAPGTQRTYMQETRLPRALLVGKTSMVSSSRWLYWK 120
           GQCRSCSSGPGPRHCRARRGPSAHLAPGTQRTYMQETRLPRALLVGKTSMVSSSRWLYWK
Sbjct: 61  GQCRSCSSGPGPRHCRARRGPSAHLAPGTQRTYMQETRLPRALLVGKTSMVSSSRWLYWK 120

Query: 121 SARSVRCSFQRPGAPEEALRVPKGAAPAPPGPGSGSGTRE 160
           SARSVRCSFQRPGAPEEALRVPKGAAPAPPGPGSGSGTRE
Sbjct: 121 SARSVRCSFQRPGAPEEALRVPKGAAPAPPGPGSGSGTRE 160


>gi|239751603 PREDICTED: hypothetical protein XP_002347927 [Homo
           sapiens]
          Length = 160

 Score =  345 bits (884), Expect = 1e-95
 Identities = 160/160 (100%), Positives = 160/160 (100%)

Query: 1   MLCPYRMMLSGLMPVALTWCAGPARRRRCRHRGSSRKACPSWHRSRSSRRRRCCSGGGSP 60
           MLCPYRMMLSGLMPVALTWCAGPARRRRCRHRGSSRKACPSWHRSRSSRRRRCCSGGGSP
Sbjct: 1   MLCPYRMMLSGLMPVALTWCAGPARRRRCRHRGSSRKACPSWHRSRSSRRRRCCSGGGSP 60

Query: 61  GQCRSCSSGPGPRHCRARRGPSAHLAPGTQRTYMQETRLPRALLVGKTSMVSSSRWLYWK 120
           GQCRSCSSGPGPRHCRARRGPSAHLAPGTQRTYMQETRLPRALLVGKTSMVSSSRWLYWK
Sbjct: 61  GQCRSCSSGPGPRHCRARRGPSAHLAPGTQRTYMQETRLPRALLVGKTSMVSSSRWLYWK 120

Query: 121 SARSVRCSFQRPGAPEEALRVPKGAAPAPPGPGSGSGTRE 160
           SARSVRCSFQRPGAPEEALRVPKGAAPAPPGPGSGSGTRE
Sbjct: 121 SARSVRCSFQRPGAPEEALRVPKGAAPAPPGPGSGSGTRE 160


>gi|239746120 PREDICTED: hypothetical protein XP_002344194 [Homo
           sapiens]
          Length = 160

 Score =  345 bits (884), Expect = 1e-95
 Identities = 160/160 (100%), Positives = 160/160 (100%)

Query: 1   MLCPYRMMLSGLMPVALTWCAGPARRRRCRHRGSSRKACPSWHRSRSSRRRRCCSGGGSP 60
           MLCPYRMMLSGLMPVALTWCAGPARRRRCRHRGSSRKACPSWHRSRSSRRRRCCSGGGSP
Sbjct: 1   MLCPYRMMLSGLMPVALTWCAGPARRRRCRHRGSSRKACPSWHRSRSSRRRRCCSGGGSP 60

Query: 61  GQCRSCSSGPGPRHCRARRGPSAHLAPGTQRTYMQETRLPRALLVGKTSMVSSSRWLYWK 120
           GQCRSCSSGPGPRHCRARRGPSAHLAPGTQRTYMQETRLPRALLVGKTSMVSSSRWLYWK
Sbjct: 61  GQCRSCSSGPGPRHCRARRGPSAHLAPGTQRTYMQETRLPRALLVGKTSMVSSSRWLYWK 120

Query: 121 SARSVRCSFQRPGAPEEALRVPKGAAPAPPGPGSGSGTRE 160
           SARSVRCSFQRPGAPEEALRVPKGAAPAPPGPGSGSGTRE
Sbjct: 121 SARSVRCSFQRPGAPEEALRVPKGAAPAPPGPGSGSGTRE 160


>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
          Length = 2752

 Score = 36.6 bits (83), Expect = 0.009
 Identities = 32/103 (31%), Positives = 40/103 (38%), Gaps = 9/103 (8%)

Query: 22  GPARRRRCRHRGSSRKACPSWHRSRSS---------RRRRCCSGGGSPGQCRSCSSGPGP 72
           G +R R    RG SR   P W RSRS+         +RR        PG  RS ++    
Sbjct: 493 GRSRSRTPTKRGHSRSRSPQWRRSRSAQRWGRSRSPQRRGRSRSPQRPGWSRSRNTQRRG 552

Query: 73  RHCRARRGPSAHLAPGTQRTYMQETRLPRALLVGKTSMVSSSR 115
           R   ARRG S   +P T+      T   R     +T     SR
Sbjct: 553 RSRSARRGRSHSRSPATRGRSRSRTPARRGRSRSRTPARRRSR 595



 Score = 28.9 bits (63), Expect = 2.0
 Identities = 22/58 (37%), Positives = 26/58 (44%), Gaps = 1/58 (1%)

Query: 22  GPARRRRCRHRGSSRKACPSWHRSRSSRRRRCCSGGGSPG-QCRSCSSGPGPRHCRAR 78
           G +R R    RG SR   P+  RSRS    R  S   +P  + RS S  P  R  R R
Sbjct: 571 GRSRSRTPARRGRSRSRTPARRRSRSRTPTRRRSRSRTPARRGRSRSRTPARRRSRTR 628



 Score = 28.5 bits (62), Expect = 2.6
 Identities = 29/83 (34%), Positives = 36/83 (43%), Gaps = 10/83 (12%)

Query: 23  PARRRRCRHRGSSRKACPSWHRSRSSRRRRCCSGGGSPGQCRSCSSGPGPR-----HCRA 77
           PARR R R R  +R+      R+RS  RRR  S   +    RS S  P  R        A
Sbjct: 609 PARRGRSRSRTPARRRS----RTRSPVRRRSRSRSPARRSGRSRSRTPARRGRSRSRTPA 664

Query: 78  RRGPSAHLAPGTQRTYMQETRLP 100
           RRG S    P  +R+    +R P
Sbjct: 665 RRGRSRSRTP-ARRSGRSRSRTP 686



 Score = 28.1 bits (61), Expect = 3.4
 Identities = 29/76 (38%), Positives = 33/76 (43%), Gaps = 8/76 (10%)

Query: 23  PARRR---RCRHRGSSRKACPSWH---RSRSSRRRRCCSGGGSPGQCRSCSSGPGPRHCR 76
           PARRR   R   R  SR   P+     RSR+  RRR  S   SP + RS S  P  R  R
Sbjct: 589 PARRRSRSRTPTRRRSRSRTPARRGRSRSRTPARRR--SRTRSPVRRRSRSRSPARRSGR 646

Query: 77  ARRGPSAHLAPGTQRT 92
           +R    A       RT
Sbjct: 647 SRSRTPARRGRSRSRT 662



 Score = 27.7 bits (60), Expect = 4.4
 Identities = 33/94 (35%), Positives = 37/94 (39%), Gaps = 4/94 (4%)

Query: 26   RRRCRHRGS---SRKACPSWHRSRSSRRRRCCSGGGSPGQCRSCSSGPGPRHCRAR-RGP 81
            RRR R   S   SR+   S  RSR +RRRR  SG  S    R  SS    R  R R R P
Sbjct: 1786 RRRDRSGSSQSTSRRRQRSRSRSRVTRRRRGGSGYHSRSPARQESSRTSSRRRRGRSRTP 1845

Query: 82   SAHLAPGTQRTYMQETRLPRALLVGKTSMVSSSR 115
                     RT     +  R+     T   S SR
Sbjct: 1846 PTSRKRSRSRTSPAPWKRSRSRASPATHRRSRSR 1879



 Score = 26.9 bits (58), Expect = 7.5
 Identities = 21/69 (30%), Positives = 27/69 (39%), Gaps = 2/69 (2%)

Query: 23   PARRRRCRHRGSSRKACPSWHRSRSSRRRRCCSGGGSPGQCRSCSSGPGPRHCRARRGPS 82
            PA+R+R     SS  +  S   S SS      S   S     S SS   P    A+ GP 
Sbjct: 2600 PAKRKRRSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSP--SPAKPGPQ 2657

Query: 83   AHLAPGTQR 91
            A   P + +
Sbjct: 2658 ALPKPASPK 2666



 Score = 26.6 bits (57), Expect = 9.8
 Identities = 34/128 (26%), Positives = 43/128 (33%), Gaps = 13/128 (10%)

Query: 23  PARRRRCRHRGSSRKACPSWHRSRSSRRRRCCSGGGSPGQCRSCSSGPGPRHCRARRGPS 82
           PA + R  HR +S  +  S   SRS  R    S              P P   R   G +
Sbjct: 253 PAPKSRRAHRSTSADSASSSDTSRSRSR----SAAAKTHTTALAGRSPSPASGRRGEGDA 308

Query: 83  AHLAPGTQRTYMQETRLPRALLVGKTSMVSSSRWLYWKSARSVRCSFQRPG-APEEALRV 141
               PGT  T  Q    P      +T+    S     K       S  RP  +PE +   
Sbjct: 309 PFSEPGTTST--QRPSSP------ETATKQPSSPYEDKDKDKKEKSATRPSPSPERSSTG 360

Query: 142 PKGAAPAP 149
           P+  AP P
Sbjct: 361 PEPPAPTP 368



 Score = 26.6 bits (57), Expect = 9.8
 Identities = 26/75 (34%), Positives = 31/75 (41%), Gaps = 4/75 (5%)

Query: 21   AGPARRRRC--RHRGSSRKACPS-WHRSRSSRRRRCCSGGGSPGQC-RSCSSGPGPRHCR 76
            + P  R R   RHR S   + P    +SRSSRRRR  S   +     R  S  P PR  +
Sbjct: 1712 SSPETRSRTPPRHRRSPSVSSPEPAEKSRSSRRRRSASSPRTKTTSRRGRSPSPKPRGLQ 1771

Query: 77   ARRGPSAHLAPGTQR 91
              R  S      T R
Sbjct: 1772 RSRSRSRREKTRTTR 1786


>gi|239754489 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 228

 Score = 35.8 bits (81), Expect = 0.016
 Identities = 29/82 (35%), Positives = 34/82 (41%), Gaps = 16/82 (19%)

Query: 19  WCAGPARRRRCRHRGSSR---------KACPSWHRSRSSRRRRCCSGGGSPGQCRSCSSG 69
           W AG   RR  R +G+           +A PS  R R  +RRR   GG   G+ R     
Sbjct: 94  WAAG---RRAQREQGAGAAVLADFGHVRAAPSGLRRRRLQRRRGGRGGRGAGRARK---- 146

Query: 70  PGPRHCRARRGPSAHLAPGTQR 91
           PGP    A R   AH AP   R
Sbjct: 147 PGPDRAGAERSLPAHRAPRLAR 168


>gi|239743069 PREDICTED: hypothetical protein XP_002342750 [Homo
           sapiens]
          Length = 231

 Score = 35.8 bits (81), Expect = 0.016
 Identities = 29/82 (35%), Positives = 34/82 (41%), Gaps = 16/82 (19%)

Query: 19  WCAGPARRRRCRHRGSSR---------KACPSWHRSRSSRRRRCCSGGGSPGQCRSCSSG 69
           W AG   RR  R +G+           +A PS  R R  +RRR   GG   G+ R     
Sbjct: 97  WAAG---RRAQREQGAGAAVLADFGHVRAAPSGLRRRRLQRRRGGRGGRGAGRARK---- 149

Query: 70  PGPRHCRARRGPSAHLAPGTQR 91
           PGP    A R   AH AP   R
Sbjct: 150 PGPDRAGAERSLPAHRAPRLAR 171


>gi|239508715 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 231

 Score = 35.8 bits (81), Expect = 0.016
 Identities = 29/82 (35%), Positives = 34/82 (41%), Gaps = 16/82 (19%)

Query: 19  WCAGPARRRRCRHRGSSR---------KACPSWHRSRSSRRRRCCSGGGSPGQCRSCSSG 69
           W AG   RR  R +G+           +A PS  R R  +RRR   GG   G+ R     
Sbjct: 97  WAAG---RRAQREQGAGAAVLADFGHVRAAPSGLRRRRLQRRRGGRGGRGAGRARK---- 149

Query: 70  PGPRHCRARRGPSAHLAPGTQR 91
           PGP    A R   AH AP   R
Sbjct: 150 PGPDRAGAERSLPAHRAPRLAR 171


>gi|239753721 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 342

 Score = 35.0 bits (79), Expect = 0.027
 Identities = 47/165 (28%), Positives = 61/165 (36%), Gaps = 39/165 (23%)

Query: 16  ALTWCAGPAR----RRRCRH---------RGSSRKACPSWHRSRSSRRRRCCSGGGSPGQ 62
           A +W  GP R    RR CR          RG S     + HR    RRR    GGGSP  
Sbjct: 78  AASWAPGPLREQGTRRGCRRSLEQPRERARGQSSLRAAAHHRHNPGRRR----GGGSPAA 133

Query: 63  CRS------CSSGPGPRHCRARRGPS------AHLAPGTQRTYMQETRLPRALLVGKTSM 110
                     + G GPR    R G S      + +A    RT   +   PR +L+  +  
Sbjct: 134 REGDAAGWLLAPGLGPRLRGGRGGWSPAPKAGSPMAAAPGRTCEGKRTAPRRMLLPDSPY 193

Query: 111 VSSSRWLYWKSARSVRC---SFQRPGAPEEALRVPKGAAPAPPGP 152
                    + AR+  C   + +RP AP  A   P+G    P  P
Sbjct: 194 AGRP-----QRARTSLCAAPASRRPPAPTVA--APRGLETRPALP 231


>gi|239748254 PREDICTED: hypothetical protein XP_002346600 [Homo
           sapiens]
          Length = 342

 Score = 35.0 bits (79), Expect = 0.027
 Identities = 47/165 (28%), Positives = 61/165 (36%), Gaps = 39/165 (23%)

Query: 16  ALTWCAGPAR----RRRCRH---------RGSSRKACPSWHRSRSSRRRRCCSGGGSPGQ 62
           A +W  GP R    RR CR          RG S     + HR    RRR    GGGSP  
Sbjct: 78  AASWAPGPLREQGTRRGCRRSLEQPRERARGQSSLRAAAHHRHNPGRRR----GGGSPAA 133

Query: 63  CRS------CSSGPGPRHCRARRGPS------AHLAPGTQRTYMQETRLPRALLVGKTSM 110
                     + G GPR    R G S      + +A    RT   +   PR +L+  +  
Sbjct: 134 REGDAAGWLLAPGLGPRLRGGRGGWSPAPKAGSPMAAAPGRTCEGKRTAPRRMLLPDSPY 193

Query: 111 VSSSRWLYWKSARSVRC---SFQRPGAPEEALRVPKGAAPAPPGP 152
                    + AR+  C   + +RP AP  A   P+G    P  P
Sbjct: 194 AGRP-----QRARTSLCAAPASRRPPAPTVA--APRGLETRPALP 231


>gi|239742155 PREDICTED: hypothetical protein XP_002342442 [Homo
           sapiens]
          Length = 342

 Score = 35.0 bits (79), Expect = 0.027
 Identities = 47/165 (28%), Positives = 61/165 (36%), Gaps = 39/165 (23%)

Query: 16  ALTWCAGPAR----RRRCRH---------RGSSRKACPSWHRSRSSRRRRCCSGGGSPGQ 62
           A +W  GP R    RR CR          RG S     + HR    RRR    GGGSP  
Sbjct: 78  AASWAPGPLREQGTRRGCRRSLEQPRERARGQSSLRAAAHHRHNPGRRR----GGGSPAA 133

Query: 63  CRS------CSSGPGPRHCRARRGPS------AHLAPGTQRTYMQETRLPRALLVGKTSM 110
                     + G GPR    R G S      + +A    RT   +   PR +L+  +  
Sbjct: 134 REGDAAGWLLAPGLGPRLRGGRGGWSPAPKAGSPMAAAPGRTCEGKRTAPRRMLLPDSPY 193

Query: 111 VSSSRWLYWKSARSVRC---SFQRPGAPEEALRVPKGAAPAPPGP 152
                    + AR+  C   + +RP AP  A   P+G    P  P
Sbjct: 194 AGRP-----QRARTSLCAAPASRRPPAPTVA--APRGLETRPALP 231


>gi|239757272 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 314

 Score = 34.7 bits (78), Expect = 0.036
 Identities = 35/120 (29%), Positives = 45/120 (37%), Gaps = 21/120 (17%)

Query: 55  SGGGSPGQCRSCSSGPGPRHCRARRG---PSAHLAPGTQRTYMQETRLPRALLVGKTSMV 111
           SGGG  G+ RS   G         RG   P     PG Q    +  R+   ++ G T  V
Sbjct: 196 SGGGITGEGRSKVRGRVEGEAWGSRGTMSPGGVALPGNQTPSPRVRRMAWEVISGSTRDV 255

Query: 112 SSSRWLYWKSARSVRCSFQRPGAPEE----------ALRVPKGAA---PAPPGPGSGSGT 158
                     ARS  C+F+ P   +           A R+    A   P  PGPG+G GT
Sbjct: 256 RRE-----SGARSEGCTFREPPPADGSDCKFPISDGARRLSSSRAEFRPRRPGPGAGQGT 310


>gi|239751775 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 314

 Score = 34.7 bits (78), Expect = 0.036
 Identities = 35/120 (29%), Positives = 45/120 (37%), Gaps = 21/120 (17%)

Query: 55  SGGGSPGQCRSCSSGPGPRHCRARRG---PSAHLAPGTQRTYMQETRLPRALLVGKTSMV 111
           SGGG  G+ RS   G         RG   P     PG Q    +  R+   ++ G T  V
Sbjct: 196 SGGGITGEGRSKVRGRVEGEAWGSRGTMSPGGVALPGNQTPSPRVRRMAWEVISGSTRDV 255

Query: 112 SSSRWLYWKSARSVRCSFQRPGAPEE----------ALRVPKGAA---PAPPGPGSGSGT 158
                     ARS  C+F+ P   +           A R+    A   P  PGPG+G GT
Sbjct: 256 RRE-----SGARSEGCTFREPPPADGSDCKFPISDGARRLSSSRAEFRPRRPGPGAGQGT 310


>gi|239746270 PREDICTED: hypothetical protein XP_002343719 [Homo
           sapiens]
          Length = 314

 Score = 34.7 bits (78), Expect = 0.036
 Identities = 35/120 (29%), Positives = 45/120 (37%), Gaps = 21/120 (17%)

Query: 55  SGGGSPGQCRSCSSGPGPRHCRARRG---PSAHLAPGTQRTYMQETRLPRALLVGKTSMV 111
           SGGG  G+ RS   G         RG   P     PG Q    +  R+   ++ G T  V
Sbjct: 196 SGGGITGEGRSKVRGRVEGEAWGSRGTMSPGGVALPGNQTPSPRVRRMAWEVISGSTRDV 255

Query: 112 SSSRWLYWKSARSVRCSFQRPGAPEE----------ALRVPKGAA---PAPPGPGSGSGT 158
                     ARS  C+F+ P   +           A R+    A   P  PGPG+G GT
Sbjct: 256 RRE-----SGARSEGCTFREPPPADGSDCKFPISDGARRLSSSRAEFRPRRPGPGAGQGT 310


>gi|239747677 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 262

 Score = 34.3 bits (77), Expect = 0.047
 Identities = 17/32 (53%), Positives = 21/32 (65%), Gaps = 1/32 (3%)

Query: 40  PSWHRSRSSRRRRCCSGGGSPGQCRSCSSGPG 71
           PS  R+  ++ RRC S GGSP +C  CSS PG
Sbjct: 132 PSLRRAPINQPRRCQSSGGSPRRCH-CSSVPG 162



 Score = 26.6 bits (57), Expect = 9.8
 Identities = 31/105 (29%), Positives = 41/105 (39%), Gaps = 17/105 (16%)

Query: 58  GSPGQCRSCSSGPGPRHCRARRGP-------SAHLAPGTQRTYMQETRLPRALLVGKTSM 110
           GS G+C+  S  PGP + R    P       S     G++    +E    RA L    S 
Sbjct: 38  GSCGRCKG-SCVPGPSNARRSFAPFPLENWISYLRGRGSRSERGRECACARARLARARSP 96

Query: 111 VSSSRWLYWKSARSVRCSFQRPGAPEEALRVPK-GAAPAPPGPGS 154
            S S   +  ++         P  P   L  P+ G AP PPGP S
Sbjct: 97  HSMSPTHFHGASA--------PPPPPPRLAQPRAGPAPPPPGPPS 133


>gi|239741546 PREDICTED: hypothetical protein XP_002342233 [Homo
           sapiens]
          Length = 262

 Score = 34.3 bits (77), Expect = 0.047
 Identities = 17/32 (53%), Positives = 21/32 (65%), Gaps = 1/32 (3%)

Query: 40  PSWHRSRSSRRRRCCSGGGSPGQCRSCSSGPG 71
           PS  R+  ++ RRC S GGSP +C  CSS PG
Sbjct: 132 PSLRRAPINQPRRCQSSGGSPRRCH-CSSVPG 162



 Score = 26.6 bits (57), Expect = 9.8
 Identities = 31/105 (29%), Positives = 41/105 (39%), Gaps = 17/105 (16%)

Query: 58  GSPGQCRSCSSGPGPRHCRARRGP-------SAHLAPGTQRTYMQETRLPRALLVGKTSM 110
           GS G+C+  S  PGP + R    P       S     G++    +E    RA L    S 
Sbjct: 38  GSCGRCKG-SCVPGPSNARRSFAPFPLENWISYLRGRGSRSERGRECACARARLARARSP 96

Query: 111 VSSSRWLYWKSARSVRCSFQRPGAPEEALRVPK-GAAPAPPGPGS 154
            S S   +  ++         P  P   L  P+ G AP PPGP S
Sbjct: 97  HSMSPTHFHGASA--------PPPPPPRLAQPRAGPAPPPPGPPS 133


>gi|42821110 hypothetical protein LOC340602 [Homo sapiens]
          Length = 503

 Score = 33.9 bits (76), Expect = 0.061
 Identities = 45/154 (29%), Positives = 63/154 (40%), Gaps = 27/154 (17%)

Query: 22  GPARRRRCRHRGSSRKACPS----WHRSRSSRRRRCCSGGGS-PGQC-RSCSSGPGPR-H 74
           GPARR R    G +R+ C S      R R S       G  S PG   R   S PGP   
Sbjct: 265 GPARRGRASVPGPARRGCDSAPGPARRGRDSAPVSAPRGRDSAPGSARRGRDSAPGPALR 324

Query: 75  CRARRGPSAH----LAPGTQRTYMQETRLPRALLVGKTSMVSSSRWLYWKSARSVRCSFQ 130
            R  R  + H      PGT       +   R+ L+ + S+  S+         S R +FQ
Sbjct: 325 VRTARSDAGHRSTSTTPGT--GLRSRSTQQRSALLSRRSLSGSADENPSCGTGSERLAFQ 382

Query: 131 -RPGAPE------------EALRVPKGAAPAPPG 151
            R G+P+             A+R+ + ++P+PPG
Sbjct: 383 SRSGSPDPEVPSRASPPVWHAVRM-RASSPSPPG 415


>gi|239757607 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 120

 Score = 33.1 bits (74), Expect = 0.10
 Identities = 20/55 (36%), Positives = 23/55 (41%), Gaps = 5/55 (9%)

Query: 33 GSSRKACPSWHRSRSSRRRRCCSGGGSPGQCRSCSSGPGPRHCRARRGPSAHLAP 87
          G +R  C     SR SR RRC + GG     R       PRH  A  G + H  P
Sbjct: 20 GPARPDC-----SRYSRLRRCDTPGGGDAGDRRAGPAAAPRHHSAGEGRAGHKGP 69


>gi|169208819 PREDICTED: similar to kinase D-interacting substrate
           220 [Homo sapiens]
          Length = 380

 Score = 33.1 bits (74), Expect = 0.10
 Identities = 39/138 (28%), Positives = 51/138 (36%), Gaps = 17/138 (12%)

Query: 23  PARRRRCRHRGSSRKACPSWHRSRSSRRRRCCSGGGSPGQCRSCSSGPGPRHC----RAR 78
           PA      HR  S +  P    +R +R     + GG  G+  S     G        R  
Sbjct: 198 PAPAASPEHRRPSPRRLPRPLLARFAR-----AAGGHGGEAGSAGKNSGRHRAQGSERPE 252

Query: 79  RGPSAHLAPGTQRTYMQETRLPRALLVGKTSMVSSSRWLYWKSARSVRCSFQRPGAPEEA 138
            G S  LA G   T  +  RL    L+   +   SS    W+S   +       GAP   
Sbjct: 253 LGRSMSLALGAV-TEEEAARLRAGALMALPNSPQSSGTGRWRSQEVLE------GAPPTL 305

Query: 139 LRVPKGAAPAPP-GPGSG 155
            + P G +P P  GPGSG
Sbjct: 306 AQAPIGLSPHPEGGPGSG 323


>gi|239752118 PREDICTED: hypothetical protein XP_002348116 [Homo
          sapiens]
          Length = 120

 Score = 33.1 bits (74), Expect = 0.10
 Identities = 20/55 (36%), Positives = 23/55 (41%), Gaps = 5/55 (9%)

Query: 33 GSSRKACPSWHRSRSSRRRRCCSGGGSPGQCRSCSSGPGPRHCRARRGPSAHLAP 87
          G +R  C     SR SR RRC + GG     R       PRH  A  G + H  P
Sbjct: 20 GPARPDC-----SRYSRLRRCDTPGGGDAGDRRAGPAAAPRHHSAGEGRAGHKGP 69


>gi|169208593 PREDICTED: similar to kinase D-interacting substrate
           220 [Homo sapiens]
          Length = 380

 Score = 33.1 bits (74), Expect = 0.10
 Identities = 39/138 (28%), Positives = 51/138 (36%), Gaps = 17/138 (12%)

Query: 23  PARRRRCRHRGSSRKACPSWHRSRSSRRRRCCSGGGSPGQCRSCSSGPGPRHC----RAR 78
           PA      HR  S +  P    +R +R     + GG  G+  S     G        R  
Sbjct: 198 PAPAASPEHRRPSPRRLPRPLLARFAR-----AAGGHGGEAGSAGKNSGRHRAQGSERPE 252

Query: 79  RGPSAHLAPGTQRTYMQETRLPRALLVGKTSMVSSSRWLYWKSARSVRCSFQRPGAPEEA 138
            G S  LA G   T  +  RL    L+   +   SS    W+S   +       GAP   
Sbjct: 253 LGRSMSLALGAV-TEEEAARLRAGALMALPNSPQSSGTGRWRSQEVLE------GAPPTL 305

Query: 139 LRVPKGAAPAPP-GPGSG 155
            + P G +P P  GPGSG
Sbjct: 306 AQAPIGLSPHPEGGPGSG 323


>gi|239746620 PREDICTED: hypothetical protein XP_002344228 [Homo
          sapiens]
          Length = 120

 Score = 33.1 bits (74), Expect = 0.10
 Identities = 20/55 (36%), Positives = 23/55 (41%), Gaps = 5/55 (9%)

Query: 33 GSSRKACPSWHRSRSSRRRRCCSGGGSPGQCRSCSSGPGPRHCRARRGPSAHLAP 87
          G +R  C     SR SR RRC + GG     R       PRH  A  G + H  P
Sbjct: 20 GPARPDC-----SRYSRLRRCDTPGGGDAGDRRAGPAAAPRHHSAGEGRAGHKGP 69


>gi|169208169 PREDICTED: similar to kinase D-interacting substrate
           220 [Homo sapiens]
          Length = 380

 Score = 33.1 bits (74), Expect = 0.10
 Identities = 39/138 (28%), Positives = 51/138 (36%), Gaps = 17/138 (12%)

Query: 23  PARRRRCRHRGSSRKACPSWHRSRSSRRRRCCSGGGSPGQCRSCSSGPGPRHC----RAR 78
           PA      HR  S +  P    +R +R     + GG  G+  S     G        R  
Sbjct: 198 PAPAASPEHRRPSPRRLPRPLLARFAR-----AAGGHGGEAGSAGKNSGRHRAQGSERPE 252

Query: 79  RGPSAHLAPGTQRTYMQETRLPRALLVGKTSMVSSSRWLYWKSARSVRCSFQRPGAPEEA 138
            G S  LA G   T  +  RL    L+   +   SS    W+S   +       GAP   
Sbjct: 253 LGRSMSLALGAV-TEEEAARLRAGALMALPNSPQSSGTGRWRSQEVLE------GAPPTL 305

Query: 139 LRVPKGAAPAPP-GPGSG 155
            + P G +P P  GPGSG
Sbjct: 306 AQAPIGLSPHPEGGPGSG 323


>gi|92859641 thymidine kinase 2, mitochondrial [Homo sapiens]
          Length = 307

 Score = 32.7 bits (73), Expect = 0.14
 Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 3/58 (5%)

Query: 24 ARRRRCRHRGSSRKACPSWHRSRSSRRRRCCSGGGSPGQCRSCSSGPGPRHCRARRGP 81
          + ++  R  GS+R A   W     + R   C G GS G   S +SGPGPR  + R  P
Sbjct: 28 SHKKEPRASGSARPAMLLWPLRGWAARALRCFGPGSRG---SPASGPGPRRVQRRAWP 82


>gi|194272140 dendrin [Homo sapiens]
          Length = 711

 Score = 32.7 bits (73), Expect = 0.14
 Identities = 39/148 (26%), Positives = 54/148 (36%), Gaps = 13/148 (8%)

Query: 4   PYRMMLSGLMPVALTWCAGPARRRRCRHRGSSRKACPSWHRSRSSRRRRCCSGGGSPGQC 63
           P R   S ++  A  W AGP    R R +   RKA      ++ + R+R  +GG      
Sbjct: 82  PRRPWASRVLQEATNWRAGPLAEVRAREQ-EKRKAASQEREAKETERKRRKAGGAR---- 136

Query: 64  RSCSSGPGPRHCRARRGPSAHLAPGTQRTYMQETRLPRALLVGKTSMVSSSRWLYWKSAR 123
               S PG      R  P      G       E   P    VG+    S+       SA 
Sbjct: 137 ---RSPPGRPRPEPRNAPRVAQLAGLPAPLRPERLAP----VGRAPRPSAQPQSDPGSAW 189

Query: 124 SVRCSFQRPGAPE-EALRVPKGAAPAPP 150
           +     +RPG P  EA  + +G+A   P
Sbjct: 190 AGPWGGRRPGPPSYEAHLLLRGSAGTAP 217


>gi|55770862 thyroglobulin [Homo sapiens]
          Length = 2768

 Score = 32.3 bits (72), Expect = 0.18
 Identities = 31/94 (32%), Positives = 37/94 (39%), Gaps = 12/94 (12%)

Query: 6    RMMLSGLMPVALTWCAGPARRRRCRHRGSSRKACPS-WHRSRSSRRRRCCSGGGSPGQCR 64
            R+  SG    A TWC  PA     R   SS   CPS  +  +S    R  S G  P  CR
Sbjct: 1116 RLQASG----AGTWCVDPASGEELRPGSSSSAQCPSLCNVLKSGVLSRRVSPGYVPA-CR 1170

Query: 65   SCSSGPGPRHCRARRG------PSAHLAPGTQRT 92
            +   G  P  C   +G       S    PGT+ T
Sbjct: 1171 AEDGGFSPVQCDQAQGSCWCVMDSGEEVPGTRVT 1204


>gi|239755326 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 375

 Score = 32.3 bits (72), Expect = 0.18
 Identities = 34/138 (24%), Positives = 49/138 (35%), Gaps = 8/138 (5%)

Query: 21  AGPARRRRCRHRGSSRKACPSWHRSRSSRRRRCCSGGGSPGQCRSCSSGPGPRHCRARRG 80
           +G +    C+  G+S  +C SW  SR+S    C S G S   C SC S      C  +  
Sbjct: 230 SGTSSTCSCQSSGTSSTSC-SWQSSRTSSTCSCQSSGTSSTSC-SCQSSGTSSTCSCQSS 287

Query: 81  PSAHLAPGTQRTYMQETRLPRALLVGKTSMVSSSRWLYWKSARSVRCSFQRPGAPEEALR 140
            ++  +   Q +    T         + S  SS+      S  S  CS Q  G    +  
Sbjct: 288 GTSSTSCSCQSSRTSST------CSCQFSRTSSTSCSCQSSRTSSTCSCQSSGTSSTSCI 341

Query: 141 VPKGAAPAPPGPGSGSGT 158
                  +    G  SGT
Sbjct: 342 CWSSGTSSTSCSGRFSGT 359



 Score = 29.3 bits (64), Expect = 1.5
 Identities = 29/106 (27%), Positives = 42/106 (39%), Gaps = 10/106 (9%)

Query: 29  CRHRGSSRKACPSWHRSRSSRRRRCCSGGGSPGQCRSCSSGPGPRHCRARRGPSAHLAPG 88
           C+  G+S  +C +W  SR+S    C S G S     SC S      C  +   ++  +  
Sbjct: 169 CQSSGTSSTSC-NWQSSRTSSTCSCQSSGTS-STSYSCQSSGTSSTCSCQSSGTSSTSCS 226

Query: 89  TQRTYMQETRLPRALLVGKTSMVSSSRWLYWKSAR-SVRCSFQRPG 133
            Q +    T           S  +SS    W+S+R S  CS Q  G
Sbjct: 227 CQSSGTSST-------CSCQSSGTSSTSCSWQSSRTSSTCSCQSSG 265


>gi|34452723 gamma-aminobutyric acid A receptor, alpha 4 precursor
           [Homo sapiens]
          Length = 554

 Score = 32.3 bits (72), Expect = 0.18
 Identities = 24/100 (24%), Positives = 41/100 (41%), Gaps = 4/100 (4%)

Query: 55  SGGGSPGQCRSCSSGPGPRHCRARRGPSAHLAPGTQRTYMQETRLPRALLVGKTSMVSSS 114
           S  G+P    + S  P  R   A    +A   P    T ++   +PR   VG     +S+
Sbjct: 420 SSKGTPRSYLASSPNPFSRANAAETISAARALPSASPTSIRTGYMPRKASVGS----AST 475

Query: 115 RWLYWKSARSVRCSFQRPGAPEEALRVPKGAAPAPPGPGS 154
           R ++    + ++ +    GA  +    P  +AP P G G+
Sbjct: 476 RHVFGSRLQRIKTTVNTIGATGKLSATPPPSAPPPSGSGT 515


>gi|24307919 small nuclear ribonucleoprotein 27kDa (U4/U6.U5) [Homo
           sapiens]
          Length = 155

 Score = 32.3 bits (72), Expect = 0.18
 Identities = 30/84 (35%), Positives = 37/84 (44%), Gaps = 9/84 (10%)

Query: 25  RRRRCRHRGSSRKACPSWHRSRSSRRRRCCSGGGSPGQCRSCSSGPGPRHCRARRGPSAH 84
           R RR R R  SR+      RSRS  RRR      SP + RS S  P P   + RR     
Sbjct: 23  RERRRRERSRSRERDRRRSRSRSPHRRR----SRSPRRHRSTS--PSPSRLKERRDEE-- 74

Query: 85  LAPGTQRTYMQETRLPRALLVGKT 108
               T+ T  +E ++    L GKT
Sbjct: 75  -KKETKETKSKERQITEEDLEGKT 97


>gi|108773804 Fraser syndrome 1 [Homo sapiens]
          Length = 4011

 Score = 32.3 bits (72), Expect = 0.18
 Identities = 18/53 (33%), Positives = 23/53 (43%), Gaps = 6/53 (11%)

Query: 31  HRGSSRKACPSWHRSRSSRRRRCCSGGGSPGQCRSCSSGPGPRHCRARRGPSA 83
           H G     CP  + + ++ R + C        C SCS GP P HC A   P A
Sbjct: 585 HDGKCMSECPGGYYADATGRCKVCHNS-----CASCS-GPTPSHCTACSPPKA 631


>gi|15055543 splicing factor, arginine/serine-rich 2B [Homo sapiens]
          Length = 282

 Score = 32.3 bits (72), Expect = 0.18
 Identities = 33/103 (32%), Positives = 47/103 (45%), Gaps = 4/103 (3%)

Query: 26  RRRCRHRGSSRKACPSWHRSRSSRRR-RCCSGGGSPGQCRSCSSGPGPRHCRARRGPSAH 84
           R R R  G  R++     RSRS RRR R  S G S  + RS S   G R+ R+    S +
Sbjct: 106 RGRSRGGGYGRRSRSYGRRSRSPRRRHRSRSRGPSCSRSRSRSRYRGSRYSRSPYSRSPY 165

Query: 85  LAPGTQRTYMQETRLPRALLVG---KTSMVSSSRWLYWKSARS 124
                 R+    +R   +   G    +S  S+SR+  + S+RS
Sbjct: 166 SRSRYSRSPYSRSRYRESRYGGSHYSSSGYSNSRYSRYHSSRS 208


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.321    0.133    0.454 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,005,537
Number of Sequences: 37866
Number of extensions: 495592
Number of successful extensions: 4023
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 233
Number of HSP's that attempted gapping in prelim test: 3637
Number of HSP's gapped (non-prelim): 557
length of query: 160
length of database: 18,247,518
effective HSP length: 94
effective length of query: 66
effective length of database: 14,688,114
effective search space: 969415524
effective search space used: 969415524
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.