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Search of human proteins with 239751280
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239751280 PREDICTED: hypothetical protein XP_002347784 [Homo
sapiens]
(84 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239756786 PREDICTED: hypothetical protein [Homo sapiens] 187 2e-48
gi|239751280 PREDICTED: hypothetical protein XP_002347784 [Homo ... 187 2e-48
gi|239745775 PREDICTED: hypothetical protein XP_002343551 [Homo ... 187 2e-48
gi|169184624 PREDICTED: similar to synaptotagmin XV-b [Homo sapi... 35 0.013
gi|237757326 synaptojanin 1 isoform d [Homo sapiens] 35 0.013
gi|169209134 PREDICTED: hypothetical protein [Homo sapiens] 34 0.028
gi|239755784 PREDICTED: hypothetical protein [Homo sapiens] 32 0.083
gi|239750286 PREDICTED: hypothetical protein XP_002347353 [Homo ... 32 0.083
gi|239744595 PREDICTED: hypothetical protein XP_002343205 [Homo ... 32 0.083
gi|28212272 hypothetical protein LOC161424 [Homo sapiens] 32 0.083
gi|16507243 GSK-3 binding protein FRAT2 [Homo sapiens] 32 0.083
gi|18765711 four jointed box 1 [Homo sapiens] 32 0.083
gi|23397666 transcriptional co-repressor Sin3A [Homo sapiens] 32 0.14
gi|223941785 transcriptional co-repressor Sin3A [Homo sapiens] 32 0.14
gi|223941782 transcriptional co-repressor Sin3A [Homo sapiens] 32 0.14
gi|38016904 thrombospondin repeat containing 1 isoform 1 [Homo s... 31 0.18
gi|56788359 thrombospondin repeat containing 1 isoform 2 [Homo s... 31 0.18
gi|110611914 progesterone receptor [Homo sapiens] 31 0.24
gi|46909594 a disintegrin and metalloproteinase domain 15 isofor... 31 0.24
gi|21264332 sialyltransferase 7A [Homo sapiens] 31 0.24
gi|61966701 dorsal neural-tube nuclear protein [Homo sapiens] 31 0.24
gi|31543559 radial spoke 3 homolog [Homo sapiens] 30 0.32
gi|134244285 Notch homolog 3 [Homo sapiens] 30 0.32
gi|239757043 PREDICTED: functional smad suppressing element 18 [... 30 0.32
gi|239751555 PREDICTED: functional smad suppressing element 18 [... 30 0.32
gi|239746067 PREDICTED: functional smad suppressing element 18 [... 30 0.32
gi|169169586 PREDICTED: hypothetical protein [Homo sapiens] 30 0.32
gi|110832843 TBP-associated factor 4 [Homo sapiens] 30 0.32
gi|197276594 RNA binding motif protein 20 [Homo sapiens] 30 0.32
gi|51093859 calcium channel, voltage-dependent, T type, alpha 1I... 30 0.32
>gi|239756786 PREDICTED: hypothetical protein [Homo sapiens]
Length = 84
Score = 187 bits (474), Expect = 2e-48
Identities = 84/84 (100%), Positives = 84/84 (100%)
Query: 1 MVPAPPADGLRGKGSRTAAAPAKPRGNQPLPPPARHFRPTQAAGTSGPADSARLRPSWRS 60
MVPAPPADGLRGKGSRTAAAPAKPRGNQPLPPPARHFRPTQAAGTSGPADSARLRPSWRS
Sbjct: 1 MVPAPPADGLRGKGSRTAAAPAKPRGNQPLPPPARHFRPTQAAGTSGPADSARLRPSWRS 60
Query: 61 CQCPVGYPLLSCPLGWCRPDLLGP 84
CQCPVGYPLLSCPLGWCRPDLLGP
Sbjct: 61 CQCPVGYPLLSCPLGWCRPDLLGP 84
>gi|239751280 PREDICTED: hypothetical protein XP_002347784 [Homo
sapiens]
Length = 84
Score = 187 bits (474), Expect = 2e-48
Identities = 84/84 (100%), Positives = 84/84 (100%)
Query: 1 MVPAPPADGLRGKGSRTAAAPAKPRGNQPLPPPARHFRPTQAAGTSGPADSARLRPSWRS 60
MVPAPPADGLRGKGSRTAAAPAKPRGNQPLPPPARHFRPTQAAGTSGPADSARLRPSWRS
Sbjct: 1 MVPAPPADGLRGKGSRTAAAPAKPRGNQPLPPPARHFRPTQAAGTSGPADSARLRPSWRS 60
Query: 61 CQCPVGYPLLSCPLGWCRPDLLGP 84
CQCPVGYPLLSCPLGWCRPDLLGP
Sbjct: 61 CQCPVGYPLLSCPLGWCRPDLLGP 84
>gi|239745775 PREDICTED: hypothetical protein XP_002343551 [Homo
sapiens]
Length = 84
Score = 187 bits (474), Expect = 2e-48
Identities = 84/84 (100%), Positives = 84/84 (100%)
Query: 1 MVPAPPADGLRGKGSRTAAAPAKPRGNQPLPPPARHFRPTQAAGTSGPADSARLRPSWRS 60
MVPAPPADGLRGKGSRTAAAPAKPRGNQPLPPPARHFRPTQAAGTSGPADSARLRPSWRS
Sbjct: 1 MVPAPPADGLRGKGSRTAAAPAKPRGNQPLPPPARHFRPTQAAGTSGPADSARLRPSWRS 60
Query: 61 CQCPVGYPLLSCPLGWCRPDLLGP 84
CQCPVGYPLLSCPLGWCRPDLLGP
Sbjct: 61 CQCPVGYPLLSCPLGWCRPDLLGP 84
>gi|169184624 PREDICTED: similar to synaptotagmin XV-b [Homo
sapiens]
Length = 267
Score = 35.0 bits (79), Expect = 0.013
Identities = 22/54 (40%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Query: 4 APPADGLRGKGSRTAAAPAKPRGNQPLPPPARHFRPTQAAGTSGPADSARLRPS 57
APP GL G G A A +PRG LP P P GTS D RP+
Sbjct: 116 APPPPGL-GLGQGRAGAGLRPRGAGSLPLPCTARLPAPQLGTSSTTDRPCARPT 168
>gi|237757326 synaptojanin 1 isoform d [Homo sapiens]
Length = 1526
Score = 35.0 bits (79), Expect = 0.013
Identities = 17/46 (36%), Positives = 23/46 (50%)
Query: 3 PAPPADGLRGKGSRTAAAPAKPRGNQPLPPPARHFRPTQAAGTSGP 48
PA P + R R A P +P Q PPP+ +P+ AG +GP
Sbjct: 1094 PAQPLEPKRPPPPRPVAPPTRPAPPQRPPPPSGRSQPSPQAGLAGP 1139
Score = 27.3 bits (59), Expect = 2.7
Identities = 18/56 (32%), Positives = 24/56 (42%), Gaps = 3/56 (5%)
Query: 2 VPAPPADGLRGKGSRTAAAPAKPRGNQPLPPPARHF---RPTQAAGTSGPADSARL 54
+ A PA L K P +P +P+ PP R RP +G S P+ A L
Sbjct: 1081 IDAQPATPLPQKDPAQPLEPKRPPPPRPVAPPTRPAPPQRPPPPSGRSQPSPQAGL 1136
>gi|169209134 PREDICTED: hypothetical protein [Homo sapiens]
Length = 107
Score = 33.9 bits (76), Expect = 0.028
Identities = 25/74 (33%), Positives = 28/74 (37%), Gaps = 6/74 (8%)
Query: 2 VPAPPADGLRGKGSRTAAAPAKPRGNQPLPPPARHFRPTQAAGTSGPADSARLRPSWRSC 61
VPAPP D T AAPA P G P PP R A P ++ P R
Sbjct: 17 VPAPPGDPSVQPAPETPAAPAPPPG--PAPPSNRR----GLAALRAPTHKSQNFPQLRQL 70
Query: 62 QCPVGYPLLSCPLG 75
C + L P G
Sbjct: 71 SCALTVRLPGLPRG 84
>gi|239755784 PREDICTED: hypothetical protein [Homo sapiens]
Length = 221
Score = 32.3 bits (72), Expect = 0.083
Identities = 25/69 (36%), Positives = 31/69 (44%), Gaps = 3/69 (4%)
Query: 3 PAPPADGLRGKGSRTAAAPAKPRGNQPLPPPARHFRPTQAAGTSGPADSARLRPSWRSCQ 62
P+ P RGKG+ AAA RG+ PP AR R +A + + L P RS
Sbjct: 16 PSLPRGAARGKGALPAAASPTSRGSSNFPPSARR-RTGRARFRNFVSPCVALGPLQRS-- 72
Query: 63 CPVGYPLLS 71
P P LS
Sbjct: 73 APAANPRLS 81
>gi|239750286 PREDICTED: hypothetical protein XP_002347353 [Homo
sapiens]
Length = 221
Score = 32.3 bits (72), Expect = 0.083
Identities = 25/69 (36%), Positives = 31/69 (44%), Gaps = 3/69 (4%)
Query: 3 PAPPADGLRGKGSRTAAAPAKPRGNQPLPPPARHFRPTQAAGTSGPADSARLRPSWRSCQ 62
P+ P RGKG+ AAA RG+ PP AR R +A + + L P RS
Sbjct: 16 PSLPRGAARGKGALPAAASPTSRGSSNFPPSARR-RTGRARFRNFVSPRVALGPLQRS-- 72
Query: 63 CPVGYPLLS 71
P P LS
Sbjct: 73 APAANPRLS 81
>gi|239744595 PREDICTED: hypothetical protein XP_002343205 [Homo
sapiens]
Length = 221
Score = 32.3 bits (72), Expect = 0.083
Identities = 25/69 (36%), Positives = 31/69 (44%), Gaps = 3/69 (4%)
Query: 3 PAPPADGLRGKGSRTAAAPAKPRGNQPLPPPARHFRPTQAAGTSGPADSARLRPSWRSCQ 62
P+ P RGKG+ AAA RG+ PP AR R +A + + L P RS
Sbjct: 16 PSLPRGAARGKGALPAAASPTSRGSSNFPPSARR-RTGRARFRNFVSPRVALGPLQRS-- 72
Query: 63 CPVGYPLLS 71
P P LS
Sbjct: 73 APAANPRLS 81
>gi|28212272 hypothetical protein LOC161424 [Homo sapiens]
Length = 636
Score = 32.3 bits (72), Expect = 0.083
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 6 PADGLRGKGSRTAAAPAKPRGNQPLPPPARHFRP 39
PA G RG+G++ + P R QP PPP P
Sbjct: 16 PAGGKRGRGAKGSGRPLPGRKRQPWPPPDGRSEP 49
>gi|16507243 GSK-3 binding protein FRAT2 [Homo sapiens]
Length = 233
Score = 32.3 bits (72), Expect = 0.083
Identities = 21/52 (40%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
Query: 4 APPADGLRGKGSRTAAAPAKPRGNQPLPPPARHFRPTQAAGTSGPADSARLR 55
APP LR G AA PA ++ PP P +A T GPA S LR
Sbjct: 65 APPGVPLRAPGPLAAAVPA----DKARPPAVPLLLPPASAETVGPAPSGALR 112
>gi|18765711 four jointed box 1 [Homo sapiens]
Length = 437
Score = 32.3 bits (72), Expect = 0.083
Identities = 23/65 (35%), Positives = 28/65 (43%), Gaps = 13/65 (20%)
Query: 5 PPADGLRGKGSRTAAAPAKPRGNQPLPPPA---------RHFRP--TQAAGTSGPADSAR 53
PP D L + +R+ PR PLPPP + FR T AAG GP +R
Sbjct: 41 PPEDRLPRRPARSGGPAPAPRF--PLPPPLAWDARGGSLKTFRALLTLAAGADGPPRQSR 98
Query: 54 LRPSW 58
P W
Sbjct: 99 SEPRW 103
>gi|23397666 transcriptional co-repressor Sin3A [Homo sapiens]
Length = 1273
Score = 31.6 bits (70), Expect = 0.14
Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 3/66 (4%)
Query: 3 PAPPADGLRGKGSRTAAAPAKPRGNQPLPPPARHFRPTQAAGTSGPADSARLRPSWRSCQ 62
P PP +++A APA+P P PPPA+ +P+Q + + P + S +
Sbjct: 220 PQPPPQHPSQPSAQSAPAPAQPA---PQPPPAKVSKPSQLQAHTPASQQTPPLPPYASPR 276
Query: 63 CPVGYP 68
P P
Sbjct: 277 SPPVQP 282
>gi|223941785 transcriptional co-repressor Sin3A [Homo sapiens]
Length = 1273
Score = 31.6 bits (70), Expect = 0.14
Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 3/66 (4%)
Query: 3 PAPPADGLRGKGSRTAAAPAKPRGNQPLPPPARHFRPTQAAGTSGPADSARLRPSWRSCQ 62
P PP +++A APA+P P PPPA+ +P+Q + + P + S +
Sbjct: 220 PQPPPQHPSQPSAQSAPAPAQPA---PQPPPAKVSKPSQLQAHTPASQQTPPLPPYASPR 276
Query: 63 CPVGYP 68
P P
Sbjct: 277 SPPVQP 282
>gi|223941782 transcriptional co-repressor Sin3A [Homo sapiens]
Length = 1273
Score = 31.6 bits (70), Expect = 0.14
Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 3/66 (4%)
Query: 3 PAPPADGLRGKGSRTAAAPAKPRGNQPLPPPARHFRPTQAAGTSGPADSARLRPSWRSCQ 62
P PP +++A APA+P P PPPA+ +P+Q + + P + S +
Sbjct: 220 PQPPPQHPSQPSAQSAPAPAQPA---PQPPPAKVSKPSQLQAHTPASQQTPPLPPYASPR 276
Query: 63 CPVGYP 68
P P
Sbjct: 277 SPPVQP 282
>gi|38016904 thrombospondin repeat containing 1 isoform 1 [Homo
sapiens]
Length = 1074
Score = 31.2 bits (69), Expect = 0.18
Identities = 23/81 (28%), Positives = 33/81 (40%), Gaps = 8/81 (9%)
Query: 3 PAPPADGLRGKGSRTAAAPAKPRGNQPLPPPARHFRPTQAAGTSGPADSARLRPSWRSCQ 62
P+P A+ L + ++T AP + P P RH QA+GT P+ + L
Sbjct: 224 PSPQAEPLSPETAQTEVAP------RTRPAPLRHHPRAQASGTEPPSPTHSLGEGGFFRA 277
Query: 63 CPVGYPLLSCPLGWCRPDLLG 83
P P GW P + G
Sbjct: 278 SP--QPRRPSSQGWASPQVAG 296
>gi|56788359 thrombospondin repeat containing 1 isoform 2 [Homo
sapiens]
Length = 877
Score = 31.2 bits (69), Expect = 0.18
Identities = 23/81 (28%), Positives = 33/81 (40%), Gaps = 8/81 (9%)
Query: 3 PAPPADGLRGKGSRTAAAPAKPRGNQPLPPPARHFRPTQAAGTSGPADSARLRPSWRSCQ 62
P+P A+ L + ++T AP + P P RH QA+GT P+ + L
Sbjct: 224 PSPQAEPLSPETAQTEVAP------RTRPAPLRHHPRAQASGTEPPSPTHSLGEGGFFRA 277
Query: 63 CPVGYPLLSCPLGWCRPDLLG 83
P P GW P + G
Sbjct: 278 SP--QPRRPSSQGWASPQVAG 296
>gi|110611914 progesterone receptor [Homo sapiens]
Length = 933
Score = 30.8 bits (68), Expect = 0.24
Identities = 18/40 (45%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 14 GSRTAAAPAKPRGNQP-LPPPARHFRPTQAAGTSGPADSA 52
G+ AA P P G P LPP A RP +AA T+ PA ++
Sbjct: 408 GANPAAFPDFPLGPPPPLPPRATPSRPGEAAVTAAPASAS 447
>gi|46909594 a disintegrin and metalloproteinase domain 15 isoform 3
preproprotein [Homo sapiens]
Length = 839
Score = 30.8 bits (68), Expect = 0.24
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 6/67 (8%)
Query: 3 PAPPADGLRGKGSRTAAA---PAKPRGNQPLPPPARHFRPTQAAGTSGPADSARLRPSWR 59
P PP L +G++ A+A PA P ++PLPP R Q+ G + P + P+
Sbjct: 746 PGPPQRALLARGTKQASALSFPAPP--SRPLPPDPVSKR-LQSQGPAKPPPPRKPLPADP 802
Query: 60 SCQCPVG 66
+CP G
Sbjct: 803 QGRCPSG 809
>gi|21264332 sialyltransferase 7A [Homo sapiens]
Length = 600
Score = 30.8 bits (68), Expect = 0.24
Identities = 17/48 (35%), Positives = 20/48 (41%)
Query: 11 RGKGSRTAAAPAKPRGNQPLPPPARHFRPTQAAGTSGPADSARLRPSW 58
R KG TA P K + Q PPPA PT A + + P W
Sbjct: 215 RQKGVTTAVIPPKEKKPQATPPPAPFQSPTTQRNQRLKAANFKSEPRW 262
>gi|61966701 dorsal neural-tube nuclear protein [Homo sapiens]
Length = 398
Score = 30.8 bits (68), Expect = 0.24
Identities = 20/67 (29%), Positives = 27/67 (40%), Gaps = 6/67 (8%)
Query: 3 PAPPADGLRGKGSRTAAAPAKPRGNQPLPPPARHFRPTQAAGTSGPADSARLRPSWRSCQ 62
P P G G G+ + P++ G+ PP RH R S P + R R WR
Sbjct: 88 PQSPRPGA-GLGAASTVDPSESTGSSTAPPTKRHCR-----SLSEPEELVRCRSPWRPGS 141
Query: 63 CPVGYPL 69
V P+
Sbjct: 142 SKVWTPV 148
>gi|31543559 radial spoke 3 homolog [Homo sapiens]
Length = 560
Score = 30.4 bits (67), Expect = 0.32
Identities = 15/30 (50%), Positives = 16/30 (53%)
Query: 4 APPADGLRGKGSRTAAAPAKPRGNQPLPPP 33
A PA GL G GS + AP GN P PP
Sbjct: 67 AAPAAGLCGAGSEPSIAPTSCAGNLPSRPP 96
>gi|134244285 Notch homolog 3 [Homo sapiens]
Length = 2321
Score = 30.4 bits (67), Expect = 0.32
Identities = 27/86 (31%), Positives = 32/86 (37%), Gaps = 10/86 (11%)
Query: 9 GLRGKGSRTAAAPAKPR----GNQPLPPPARHFRPTQAAGTSGPADSARLRPSWRSC--- 61
G G +T +P + + G Q P P T + P R RSC
Sbjct: 1237 GFSGPRCQTVLSPCESQPCQHGGQCRPSPGPGGGLTFTCHCAQPFWGPRCERVARSCREL 1296
Query: 62 QCPVGYPLLSCPLG---WCRPDLLGP 84
QCPVG P P G C P L GP
Sbjct: 1297 QCPVGVPCQQTPRGPRCACPPGLSGP 1322
>gi|239757043 PREDICTED: functional smad suppressing element 18
[Homo sapiens]
Length = 996
Score = 30.4 bits (67), Expect = 0.32
Identities = 17/52 (32%), Positives = 24/52 (46%)
Query: 5 PPADGLRGKGSRTAAAPAKPRGNQPLPPPARHFRPTQAAGTSGPADSARLRP 56
PPAD + G+ AAA + P G++ P H + AG S+ RP
Sbjct: 575 PPADSVAAAGAGAAAAGSGPAGSRVPAPHHPHLLEGRKAGGGSYHHSSAFRP 626
>gi|239751555 PREDICTED: functional smad suppressing element 18
[Homo sapiens]
Length = 1252
Score = 30.4 bits (67), Expect = 0.32
Identities = 17/52 (32%), Positives = 24/52 (46%)
Query: 5 PPADGLRGKGSRTAAAPAKPRGNQPLPPPARHFRPTQAAGTSGPADSARLRP 56
PPAD + G+ AAA + P G++ P H + AG S+ RP
Sbjct: 575 PPADSVAAAGAGAAAAGSGPAGSRVPAPHHPHLLEGRKAGGGSYHHSSAFRP 626
>gi|239746067 PREDICTED: functional smad suppressing element 18
[Homo sapiens]
Length = 1252
Score = 30.4 bits (67), Expect = 0.32
Identities = 17/52 (32%), Positives = 24/52 (46%)
Query: 5 PPADGLRGKGSRTAAAPAKPRGNQPLPPPARHFRPTQAAGTSGPADSARLRP 56
PPAD + G+ AAA + P G++ P H + AG S+ RP
Sbjct: 575 PPADSVAAAGAGAAAAGSGPAGSRVPAPHHPHLLEGRKAGGGSYHHSSAFRP 626
>gi|169169586 PREDICTED: hypothetical protein [Homo sapiens]
Length = 251
Score = 30.4 bits (67), Expect = 0.32
Identities = 22/54 (40%), Positives = 26/54 (48%), Gaps = 5/54 (9%)
Query: 11 RGKGSRTAAAPAK---PRGNQPLPPPARHFRPTQAAGT--SGPADSARLRPSWR 59
R G+RT A PA+ P P P P R P AAG S PA + RP+ R
Sbjct: 25 RAPGTRTPATPARSPRPPLCAPRPAPGRAQSPVPAAGAVPSPPAAAHPARPALR 78
>gi|110832843 TBP-associated factor 4 [Homo sapiens]
Length = 1085
Score = 30.4 bits (67), Expect = 0.32
Identities = 23/56 (41%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
Query: 3 PAPPADGLRGKGSRTA-AAPAKPRGNQPLPP-PARHFRPTQAAGTSGPADSARLRP 56
PA PA+G G A A+P G P P P RP AG + PA A+LRP
Sbjct: 75 PAAPAEGAPGAAPEPPPAGRARPGGGGPQRPGPPSPRRPLVPAGPAPPA--AKLRP 128
Score = 28.1 bits (61), Expect = 1.6
Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Query: 5 PPADGLRGKGSRTAAAPAKPRGNQPLPP-PARHFRPTQAAGTSGP 48
PP +G G + AA A G +P P PA+ P A +GP
Sbjct: 128 PPPEGSAGSCAPVPAAAAVAAGPEPAPAGPAKPAGPAALAARAGP 172
Score = 26.6 bits (57), Expect = 4.5
Identities = 18/54 (33%), Positives = 21/54 (38%), Gaps = 10/54 (18%)
Query: 3 PAPPADGLRGKGSRTAAAPAKPRGNQPLPPPARHFRPTQAAGTSGPADSARLRP 56
P+PPA A APA P P PPPA +GP +A P
Sbjct: 255 PSPPA----------APAPAAPAAAPPPPPPAPATLARPPGHPAGPPTAAPAVP 298
Score = 26.2 bits (56), Expect = 5.9
Identities = 18/57 (31%), Positives = 22/57 (38%), Gaps = 7/57 (12%)
Query: 3 PAPPADGLRGKGSRTAAAPAKPRGNQPL-----PPPARHFRPTQ--AAGTSGPADSA 52
P PP G G P P +PL PPA RP +AG+ P +A
Sbjct: 87 PEPPPAGRARPGGGGPQRPGPPSPRRPLVPAGPAPPAAKLRPPPEGSAGSCAPVPAA 143
>gi|197276594 RNA binding motif protein 20 [Homo sapiens]
Length = 1227
Score = 30.4 bits (67), Expect = 0.32
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 14 GSRTAAAPAKPRGNQPLPPPARHFRPTQA 42
G+R + AP+ PRG Q PPP + P QA
Sbjct: 28 GARASPAPSGPRGMQQPPPPPQPPPPPQA 56
>gi|51093859 calcium channel, voltage-dependent, T type, alpha 1I
subunit isoform b [Homo sapiens]
Length = 2188
Score = 30.4 bits (67), Expect = 0.32
Identities = 20/69 (28%), Positives = 27/69 (39%), Gaps = 9/69 (13%)
Query: 5 PPADGLRGKGSRTAAAPAKPRGNQPL-PPPARHFRPTQAAGTSGPADSA--------RLR 55
P L+ S+ +P P + PL P PA F P +A GP L+
Sbjct: 1897 PVRSWLKHDSSQAPPSPFSPDASSPLLPMPAEFFHPAVSASQKGPEKGTGTGTLPKIALQ 1956
Query: 56 PSWRSCQCP 64
SW S + P
Sbjct: 1957 GSWASLRSP 1965
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.139 0.484
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,067,167
Number of Sequences: 37866
Number of extensions: 293705
Number of successful extensions: 2822
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 235
Number of HSP's that attempted gapping in prelim test: 2478
Number of HSP's gapped (non-prelim): 572
length of query: 84
length of database: 18,247,518
effective HSP length: 56
effective length of query: 28
effective length of database: 16,127,022
effective search space: 451556616
effective search space used: 451556616
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.