Guide to the Human Genome
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Name: LOC100293646 Sequence: fasta or formatted (221aa) NCBI GI: 239755784
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            14.5         32           3
 C cysteine            3.2          7           1
 D aspartate           2.3          5           1
 E glutamate           2.7          6           1
 F phenylalanine       7.2         16           1
 G glycine             7.7         17           1
 H histidine           2.3          5           1
 I isoleucine          0.0          0           0
 K lysine              1.4          3           1
 L leucine             5.4         12           1
 M methionine          0.9          2           1
 N asparagine          2.3          5           1
 P proline            12.2         27           2
 Q glutamine           2.3          5           1
 R arginine           14.5         32           4
 S serine             10.0         22           2
 T threonine           5.0         11           1
 V valine              4.5         10           2
 W tryptophan          0.0          0           0
 Y tyrosine            1.8          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100291416          0.991   PREDICTED: hypothetical protein XP_002347353 
LOC100288055          0.991   PREDICTED: hypothetical protein XP_002343205 
SRRM1                 0.039   serine/arginine repetitive matrix 1 
LOC100292122          0.032   PREDICTED: hypothetical protein XP_002345138 
LOC100286986          0.032   PREDICTED: hypothetical protein XP_002344191 
LOC643355             0.032   PREDICTED: hypothetical protein 
LOC643355             0.032   PREDICTED: hypothetical protein 
LOC100293577          0.028   PREDICTED: hypothetical protein 
LOC100134569          0.028   PREDICTED: hypothetical protein 
LDB3                  0.028   LIM domain binding 3 isoform 1 
LOC100290265          0.028   PREDICTED: hypothetical protein XP_002346787 
LOC100293644          0.028   PREDICTED: hypothetical protein 
LOC100287563          0.028   PREDICTED: hypothetical protein 
LOC100287563          0.028   PREDICTED: hypothetical protein XP_002343733 
FLJ37078              0.028   hypothetical protein LOC222183 
AGRN                  0.023   agrin 
LOC100293375          0.023   PREDICTED: hypothetical protein 
FLJ22184              0.023   PREDICTED: hypothetical protein LOC80164 
SRRM2                 0.023   splicing coactivator subunit SRm300 
LOC100293107          0.021   PREDICTED: hypothetical protein 
LOC100293975          0.021   PREDICTED: hypothetical protein 
LOC728503             0.021   PREDICTED: hypothetical protein 
LOC100290679          0.021   PREDICTED: hypothetical protein XP_002347834 
LOC100290812          0.021   PREDICTED: hypothetical protein XP_002347678 
LOC728503             0.021   PREDICTED: hypothetical protein 
LOC100289338          0.021   PREDICTED: hypothetical protein 
LOC100288571          0.021   PREDICTED: hypothetical protein XP_002343612 
LOC100288205          0.021   PREDICTED: hypothetical protein XP_002343496 
LOC728503             0.021   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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