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Search of human proteins with 239751150
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239751150 PREDICTED: hypothetical protein XP_002347731 [Homo
sapiens]
(248 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239751150 PREDICTED: hypothetical protein XP_002347731 [Homo ... 509 e-145
gi|61676108 cytoplasmic tRNA 2-thiolation protein 2 isoform 2 [H... 504 e-143
gi|61676106 cytoplasmic tRNA 2-thiolation protein 2 isoform 1 [H... 504 e-143
gi|222537719 ATP binding domain 3 [Homo sapiens] 37 0.016
gi|206597502 NESH protein isoform 2 [Homo sapiens] 36 0.036
gi|7705981 NESH protein isoform 1 [Homo sapiens] 36 0.036
gi|148613882 homeobox A4 [Homo sapiens] 34 0.10
gi|162329583 cleavage and polyadenylation specific factor 6, 68 ... 34 0.14
gi|224451135 splicing factor, arginine/serine-rich 15 isoform 3 ... 33 0.23
gi|224451133 splicing factor, arginine/serine-rich 15 isoform 2 ... 33 0.23
gi|40789229 splicing factor, arginine/serine-rich 15 isoform 1 [... 33 0.23
gi|84490388 R-spondin1 [Homo sapiens] 33 0.30
gi|145275195 Cdk5 and Abl enzyme substrate 2 [Homo sapiens] 33 0.30
gi|38146113 arginine/serine-rich coiled-coil 2 isoform b [Homo s... 33 0.30
gi|38146109 arginine/serine-rich coiled-coil 2 isoform c [Homo s... 33 0.30
gi|38146107 arginine/serine-rich coiled-coil 2 isoform a [Homo s... 33 0.30
gi|56549666 tyrosine kinase, non-receptor, 2 isoform 1 [Homo sap... 32 0.39
gi|58331191 tyrosine kinase, non-receptor, 2 isoform 2 [Homo sap... 32 0.39
gi|217416332 trinucleotide repeat containing 6C isoform 1 [Homo ... 32 0.39
gi|33413425 trinucleotide repeat containing 6C isoform 2 [Homo s... 32 0.39
gi|61966741 TMF regulated nuclear protein [Homo sapiens] 32 0.39
gi|57977325 membrane-associated ring finger (C3HC4) 4 [Homo sapi... 32 0.51
gi|50345997 E1A binding protein p300 [Homo sapiens] 32 0.67
gi|239757409 PREDICTED: similar to zinc finger protein 208 [Homo... 32 0.67
gi|239746371 PREDICTED: similar to zinc finger protein 208 [Homo... 32 0.67
gi|31543452 PX domain containing serine/threonine kinase [Homo s... 32 0.67
gi|126090663 zinc finger homeodomain 4 [Homo sapiens] 32 0.67
gi|50428940 mediator complex subunit 25 [Homo sapiens] 32 0.67
gi|56790935 hypothetical protein LOC85369 [Homo sapiens] 32 0.67
gi|122937251 lysine (K)-specific demethylase 6B [Homo sapiens] 31 0.88
>gi|239751150 PREDICTED: hypothetical protein XP_002347731 [Homo
sapiens]
Length = 248
Score = 509 bits (1311), Expect = e-145
Identities = 248/248 (100%), Positives = 248/248 (100%)
Query: 1 MCQVGEDYGEPAPEEPPPAPRPSREQKCVKCKEAQPVVVIRAGDAFCRDCFKAFYVHKFR 60
MCQVGEDYGEPAPEEPPPAPRPSREQKCVKCKEAQPVVVIRAGDAFCRDCFKAFYVHKFR
Sbjct: 1 MCQVGEDYGEPAPEEPPPAPRPSREQKCVKCKEAQPVVVIRAGDAFCRDCFKAFYVHKFR 60
Query: 61 AMLGKNRLIFPGEKVLLAWSGGPSSSSMVWQVLEGLSQDSAKRLRFVAGVIFVDEGAACG 120
AMLGKNRLIFPGEKVLLAWSGGPSSSSMVWQVLEGLSQDSAKRLRFVAGVIFVDEGAACG
Sbjct: 61 AMLGKNRLIFPGEKVLLAWSGGPSSSSMVWQVLEGLSQDSAKRLRFVAGVIFVDEGAACG 120
Query: 121 QSLEERSKTLAEVKPILQATGFPWHVVALEEVFSLPPSVLWCSAQELVGSEGAYKAAVDS 180
QSLEERSKTLAEVKPILQATGFPWHVVALEEVFSLPPSVLWCSAQELVGSEGAYKAAVDS
Sbjct: 121 QSLEERSKTLAEVKPILQATGFPWHVVALEEVFSLPPSVLWCSAQELVGSEGAYKAAVDS 180
Query: 181 FLQQQHVLGAGGGPGPTQGEEQPPQPPLDPQNLARPPAPAQTEALSQLFCSVRTLTAKEE 240
FLQQQHVLGAGGGPGPTQGEEQPPQPPLDPQNLARPPAPAQTEALSQLFCSVRTLTAKEE
Sbjct: 181 FLQQQHVLGAGGGPGPTQGEEQPPQPPLDPQNLARPPAPAQTEALSQLFCSVRTLTAKEE 240
Query: 241 LLQTLRNP 248
LLQTLRNP
Sbjct: 241 LLQTLRNP 248
>gi|61676108 cytoplasmic tRNA 2-thiolation protein 2 isoform 2 [Homo
sapiens]
Length = 485
Score = 504 bits (1298), Expect = e-143
Identities = 246/246 (100%), Positives = 246/246 (100%)
Query: 1 MCQVGEDYGEPAPEEPPPAPRPSREQKCVKCKEAQPVVVIRAGDAFCRDCFKAFYVHKFR 60
MCQVGEDYGEPAPEEPPPAPRPSREQKCVKCKEAQPVVVIRAGDAFCRDCFKAFYVHKFR
Sbjct: 1 MCQVGEDYGEPAPEEPPPAPRPSREQKCVKCKEAQPVVVIRAGDAFCRDCFKAFYVHKFR 60
Query: 61 AMLGKNRLIFPGEKVLLAWSGGPSSSSMVWQVLEGLSQDSAKRLRFVAGVIFVDEGAACG 120
AMLGKNRLIFPGEKVLLAWSGGPSSSSMVWQVLEGLSQDSAKRLRFVAGVIFVDEGAACG
Sbjct: 61 AMLGKNRLIFPGEKVLLAWSGGPSSSSMVWQVLEGLSQDSAKRLRFVAGVIFVDEGAACG 120
Query: 121 QSLEERSKTLAEVKPILQATGFPWHVVALEEVFSLPPSVLWCSAQELVGSEGAYKAAVDS 180
QSLEERSKTLAEVKPILQATGFPWHVVALEEVFSLPPSVLWCSAQELVGSEGAYKAAVDS
Sbjct: 121 QSLEERSKTLAEVKPILQATGFPWHVVALEEVFSLPPSVLWCSAQELVGSEGAYKAAVDS 180
Query: 181 FLQQQHVLGAGGGPGPTQGEEQPPQPPLDPQNLARPPAPAQTEALSQLFCSVRTLTAKEE 240
FLQQQHVLGAGGGPGPTQGEEQPPQPPLDPQNLARPPAPAQTEALSQLFCSVRTLTAKEE
Sbjct: 181 FLQQQHVLGAGGGPGPTQGEEQPPQPPLDPQNLARPPAPAQTEALSQLFCSVRTLTAKEE 240
Query: 241 LLQTLR 246
LLQTLR
Sbjct: 241 LLQTLR 246
>gi|61676106 cytoplasmic tRNA 2-thiolation protein 2 isoform 1 [Homo
sapiens]
Length = 515
Score = 504 bits (1298), Expect = e-143
Identities = 246/246 (100%), Positives = 246/246 (100%)
Query: 1 MCQVGEDYGEPAPEEPPPAPRPSREQKCVKCKEAQPVVVIRAGDAFCRDCFKAFYVHKFR 60
MCQVGEDYGEPAPEEPPPAPRPSREQKCVKCKEAQPVVVIRAGDAFCRDCFKAFYVHKFR
Sbjct: 1 MCQVGEDYGEPAPEEPPPAPRPSREQKCVKCKEAQPVVVIRAGDAFCRDCFKAFYVHKFR 60
Query: 61 AMLGKNRLIFPGEKVLLAWSGGPSSSSMVWQVLEGLSQDSAKRLRFVAGVIFVDEGAACG 120
AMLGKNRLIFPGEKVLLAWSGGPSSSSMVWQVLEGLSQDSAKRLRFVAGVIFVDEGAACG
Sbjct: 61 AMLGKNRLIFPGEKVLLAWSGGPSSSSMVWQVLEGLSQDSAKRLRFVAGVIFVDEGAACG 120
Query: 121 QSLEERSKTLAEVKPILQATGFPWHVVALEEVFSLPPSVLWCSAQELVGSEGAYKAAVDS 180
QSLEERSKTLAEVKPILQATGFPWHVVALEEVFSLPPSVLWCSAQELVGSEGAYKAAVDS
Sbjct: 121 QSLEERSKTLAEVKPILQATGFPWHVVALEEVFSLPPSVLWCSAQELVGSEGAYKAAVDS 180
Query: 181 FLQQQHVLGAGGGPGPTQGEEQPPQPPLDPQNLARPPAPAQTEALSQLFCSVRTLTAKEE 240
FLQQQHVLGAGGGPGPTQGEEQPPQPPLDPQNLARPPAPAQTEALSQLFCSVRTLTAKEE
Sbjct: 181 FLQQQHVLGAGGGPGPTQGEEQPPQPPLDPQNLARPPAPAQTEALSQLFCSVRTLTAKEE 240
Query: 241 LLQTLR 246
LLQTLR
Sbjct: 241 LLQTLR 246
>gi|222537719 ATP binding domain 3 [Homo sapiens]
Length = 348
Score = 37.0 bits (84), Expect = 0.016
Identities = 37/127 (29%), Positives = 53/127 (41%), Gaps = 11/127 (8%)
Query: 28 CVKCKEAQPVVVIR-AGDAFCRDCFKAFYVHKFRAMLGKNRLIFPGEKVLLAWSGGPSSS 86
C C A+ + +G A C CF A + + + RL+ PG V + SGG S+
Sbjct: 6 CASCHAARAALRRPLSGQALCGACFCAAFEAEVLHTVLAGRLLPPGAVVAVGASGGKDST 65
Query: 87 SMVWQVLEGLSQDSAKRLRFVAGVIFVDEGAACGQSLEERSKTLAEVKPILQATGFPWHV 146
VL + + A RL ++ VDEG R LA V+ P V
Sbjct: 66 -----VLAHVLRALAPRLGISLQLVAVDEGIG-----GYRDAALAAVRRQAARWELPLTV 115
Query: 147 VALEEVF 153
VA E++F
Sbjct: 116 VAYEDLF 122
>gi|206597502 NESH protein isoform 2 [Homo sapiens]
Length = 360
Score = 35.8 bits (81), Expect = 0.036
Identities = 18/39 (46%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Query: 189 GAGGGPGPTQGEEQPPQPPLDPQNLARPPAPAQTEALSQ 227
G GG P P +G+ PP PPL P +L PP PA E +
Sbjct: 213 GVGGAPTP-KGQAAPPAPPL-PSSLDPPPPPAAVEVFQR 249
>gi|7705981 NESH protein isoform 1 [Homo sapiens]
Length = 366
Score = 35.8 bits (81), Expect = 0.036
Identities = 18/39 (46%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Query: 189 GAGGGPGPTQGEEQPPQPPLDPQNLARPPAPAQTEALSQ 227
G GG P P +G+ PP PPL P +L PP PA E +
Sbjct: 219 GVGGAPTP-KGQAAPPAPPL-PSSLDPPPPPAAVEVFQR 255
>gi|148613882 homeobox A4 [Homo sapiens]
Length = 320
Score = 34.3 bits (77), Expect = 0.10
Identities = 16/41 (39%), Positives = 20/41 (48%)
Query: 179 DSFLQQQHVLGAGGGPGPTQGEEQPPQPPLDPQNLARPPAP 219
+ + Q GA GGPG G +QPP PP L +P P
Sbjct: 21 EEYAQHSGSGGADGGPGGGPGYQQPPAPPTQHLPLQQPQLP 61
>gi|162329583 cleavage and polyadenylation specific factor 6, 68 kD
subunit [Homo sapiens]
Length = 551
Score = 33.9 bits (76), Expect = 0.14
Identities = 14/31 (45%), Positives = 16/31 (51%)
Query: 189 GAGGGPGPTQGEEQPPQPPLDPQNLARPPAP 219
G GG P P + PP+PPL P PP P
Sbjct: 222 GPGGPPPPFPAGQTPPRPPLGPPGPPGPPGP 252
>gi|224451135 splicing factor, arginine/serine-rich 15 isoform 3
[Homo sapiens]
Length = 1125
Score = 33.1 bits (74), Expect = 0.23
Identities = 15/39 (38%), Positives = 19/39 (48%)
Query: 189 GAGGGPGPTQGEEQPPQPPLDPQNLARPPAPAQTEALSQ 227
G G GPG + + QPP PQ +P AP Q + Q
Sbjct: 904 GPGPGPGGPEDRDGRQQPPQQPQQQPQPQAPQQPQQQQQ 942
>gi|224451133 splicing factor, arginine/serine-rich 15 isoform 2
[Homo sapiens]
Length = 1132
Score = 33.1 bits (74), Expect = 0.23
Identities = 15/39 (38%), Positives = 19/39 (48%)
Query: 189 GAGGGPGPTQGEEQPPQPPLDPQNLARPPAPAQTEALSQ 227
G G GPG + + QPP PQ +P AP Q + Q
Sbjct: 911 GPGPGPGGPEDRDGRQQPPQQPQQQPQPQAPQQPQQQQQ 949
>gi|40789229 splicing factor, arginine/serine-rich 15 isoform 1
[Homo sapiens]
Length = 1147
Score = 33.1 bits (74), Expect = 0.23
Identities = 15/39 (38%), Positives = 19/39 (48%)
Query: 189 GAGGGPGPTQGEEQPPQPPLDPQNLARPPAPAQTEALSQ 227
G G GPG + + QPP PQ +P AP Q + Q
Sbjct: 926 GPGPGPGGPEDRDGRQQPPQQPQQQPQPQAPQQPQQQQQ 964
>gi|84490388 R-spondin1 [Homo sapiens]
Length = 263
Score = 32.7 bits (73), Expect = 0.30
Identities = 35/118 (29%), Positives = 45/118 (38%), Gaps = 17/118 (14%)
Query: 27 KCVKCKEAQPVVVIRAGDAFCRDCFKAFYVHKFR----------AMLGKNRLIFPGEKVL 76
KC+KCK FC C + Y+HK R A G P + +
Sbjct: 93 KCIKCKIEHCEACFSHN--FCTKCKEGLYLHKGRCYPACPEGSSAANGTMECSSPAQCEM 150
Query: 77 LAWS-GGPSSSSMVWQVLEGLSQDSAKRLRFVAGVIFVDEGAACGQSLEERSKTLAEV 133
WS GP S Q L G + S +R R V V + AAC + E R T+ V
Sbjct: 151 SEWSPWGPCSKK---QQLCGFRRGSEERTRRVLHAP-VGDHAACSDTKETRRCTVRRV 204
>gi|145275195 Cdk5 and Abl enzyme substrate 2 [Homo sapiens]
Length = 478
Score = 32.7 bits (73), Expect = 0.30
Identities = 16/31 (51%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 190 AGGGPGPTQGEEQPPQPPLDPQNLARPPAPA 220
AGG PGP G PP PP P + AR P A
Sbjct: 6 AGGAPGPAPGPAGPP-PPAAPTSAARAPPQA 35
>gi|38146113 arginine/serine-rich coiled-coil 2 isoform b [Homo
sapiens]
Length = 375
Score = 32.7 bits (73), Expect = 0.30
Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 6/81 (7%)
Query: 58 KFRAMLGKNRLIFPGEKVLLAWSGGPSSSSMVWQVLEGLSQDSAKRLRFVAGVIFVDEGA 117
KF K ++++ G+K G S S+ +W+ L ++D + R + G+ DE A
Sbjct: 268 KFAEQEKKRKMLWQGKK-----EGDKSQSAEIWEKLNFGNKDQNVKFRKLMGIKSEDE-A 321
Query: 118 ACGQSLEERSKTLAEVKPILQ 138
C EE KTL + + + +
Sbjct: 322 GCSSVDEESYKTLKQQEEVFR 342
>gi|38146109 arginine/serine-rich coiled-coil 2 isoform c [Homo
sapiens]
Length = 202
Score = 32.7 bits (73), Expect = 0.30
Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 6/81 (7%)
Query: 58 KFRAMLGKNRLIFPGEKVLLAWSGGPSSSSMVWQVLEGLSQDSAKRLRFVAGVIFVDEGA 117
KF K ++++ G+K G S S+ +W+ L ++D + R + G+ DE A
Sbjct: 95 KFAEQEKKRKMLWQGKK-----EGDKSQSAEIWEKLNFGNKDQNVKFRKLMGIKSEDE-A 148
Query: 118 ACGQSLEERSKTLAEVKPILQ 138
C EE KTL + + + +
Sbjct: 149 GCSSVDEESYKTLKQQEEVFR 169
>gi|38146107 arginine/serine-rich coiled-coil 2 isoform a [Homo
sapiens]
Length = 434
Score = 32.7 bits (73), Expect = 0.30
Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 6/81 (7%)
Query: 58 KFRAMLGKNRLIFPGEKVLLAWSGGPSSSSMVWQVLEGLSQDSAKRLRFVAGVIFVDEGA 117
KF K ++++ G+K G S S+ +W+ L ++D + R + G+ DE A
Sbjct: 327 KFAEQEKKRKMLWQGKK-----EGDKSQSAEIWEKLNFGNKDQNVKFRKLMGIKSEDE-A 380
Query: 118 ACGQSLEERSKTLAEVKPILQ 138
C EE KTL + + + +
Sbjct: 381 GCSSVDEESYKTLKQQEEVFR 401
>gi|56549666 tyrosine kinase, non-receptor, 2 isoform 1 [Homo
sapiens]
Length = 1038
Score = 32.3 bits (72), Expect = 0.39
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 14/55 (25%)
Query: 187 VLGAGGGPGPTQG--------EEQPPQPPLD------PQNLARPPAPAQTEALSQ 227
++GAG GP+QG E+ P PPL+ PQ +PP+ AQT + Q
Sbjct: 654 LVGAGVPAGPSQGQTNYAFVPEQARPPPPLEDNLFLPPQGGGKPPSSAQTAEIFQ 708
Score = 27.7 bits (60), Expect = 9.7
Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Query: 194 PGPTQGEEQPPQPPLDPQNLARPPAP 219
PGP PP+ PL PQ +R P+P
Sbjct: 770 PGPASPPRVPPREPLSPQG-SRTPSP 794
>gi|58331191 tyrosine kinase, non-receptor, 2 isoform 2 [Homo
sapiens]
Length = 1086
Score = 32.3 bits (72), Expect = 0.39
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 14/55 (25%)
Query: 187 VLGAGGGPGPTQG--------EEQPPQPPLD------PQNLARPPAPAQTEALSQ 227
++GAG GP+QG E+ P PPL+ PQ +PP+ AQT + Q
Sbjct: 732 LVGAGVPAGPSQGQTNYAFVPEQARPPPPLEDNLFLPPQGGGKPPSSAQTAEIFQ 786
Score = 27.7 bits (60), Expect = 9.7
Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Query: 194 PGPTQGEEQPPQPPLDPQNLARPPAP 219
PGP PP+ PL PQ +R P+P
Sbjct: 848 PGPASPPRVPPREPLSPQG-SRTPSP 872
>gi|217416332 trinucleotide repeat containing 6C isoform 1 [Homo
sapiens]
Length = 1726
Score = 32.3 bits (72), Expect = 0.39
Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 188 LGAGGGPGPTQGE--EQPPQPPLDPQNLARPPAPAQ 221
LG G G Q +QPPQPP+ P N ++P AQ
Sbjct: 1073 LGMFGNSGAAQARTMQQPPQPPVQPLNSSQPSLRAQ 1108
>gi|33413425 trinucleotide repeat containing 6C isoform 2 [Homo
sapiens]
Length = 1690
Score = 32.3 bits (72), Expect = 0.39
Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 188 LGAGGGPGPTQGE--EQPPQPPLDPQNLARPPAPAQ 221
LG G G Q +QPPQPP+ P N ++P AQ
Sbjct: 1076 LGMFGNSGAAQARTMQQPPQPPVQPLNSSQPSLRAQ 1111
>gi|61966741 TMF regulated nuclear protein [Homo sapiens]
Length = 227
Score = 32.3 bits (72), Expect = 0.39
Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Query: 193 GPGPTQG--EEQPPQPPLDPQNLARPPAPAQT 222
GPG +G E++ P PP DP ++PP P T
Sbjct: 10 GPGAQEGTAEQRSPPPPRDPMPSSQPPPPTPT 41
>gi|57977325 membrane-associated ring finger (C3HC4) 4 [Homo
sapiens]
Length = 410
Score = 32.0 bits (71), Expect = 0.51
Identities = 23/63 (36%), Positives = 27/63 (42%), Gaps = 16/63 (25%)
Query: 188 LGAGG-----GPGPTQGEEQ---PPQPPLDPQNL--------ARPPAPAQTEALSQLFCS 231
LGAGG GP G E PP PPL P ++ PPA + A S FC
Sbjct: 82 LGAGGWAGWRGPREVVGREPPPVPPPPPLPPSSVEDDWGGPATEPPASLLSSASSDDFCK 141
Query: 232 VRT 234
+T
Sbjct: 142 EKT 144
>gi|50345997 E1A binding protein p300 [Homo sapiens]
Length = 2414
Score = 31.6 bits (70), Expect = 0.67
Identities = 24/74 (32%), Positives = 34/74 (45%), Gaps = 8/74 (10%)
Query: 182 LQQQHVLGAGGGPGPTQGEEQPPQPPL-------DPQNLARPPAPAQTEALSQLFCSVRT 234
+QQQ GG P P Q + P+P + P N+A P Q +S L +
Sbjct: 1989 MQQQPPWSQGGLPQPQQLQSGMPRPAMMSVAQHGQPLNMAPQPGLGQV-GISPLKPGTVS 2047
Query: 235 LTAKEELLQTLRNP 248
A + LL+TLR+P
Sbjct: 2048 QQALQNLLRTLRSP 2061
>gi|239757409 PREDICTED: similar to zinc finger protein 208 [Homo
sapiens]
Length = 1059
Score = 31.6 bits (70), Expect = 0.67
Identities = 54/220 (24%), Positives = 76/220 (34%), Gaps = 40/220 (18%)
Query: 13 PEEPPPAPRPSREQKCVKCKEAQPVVVIRAGDA--FCRDCFKAFYVHKFRAMLGKNRLIF 70
P P AP PS + P GD C C+K F K + L ++++I
Sbjct: 316 PPATPVAPAPSADGSAAPAGVGVPPPATGGGDGPFACPLCWKVF---KKPSHLHQHQIIH 372
Query: 71 PGEKVLLAWSGGPSSSSMVWQVLEGLSQDSAKRLRFVAGVIFVDEGAACGQSLEERSKTL 130
GEK + S S + + + SA LR G+ CG++ + S L
Sbjct: 373 TGEKPF-SCSVCSKSFNRRESLKRHVKTHSADLLRLPCGI--------CGKAFRDASYLL 423
Query: 131 AEVKPILQA-TGFPWHVVALE---EVFSLPPSVLWCSAQELVGSEGAYKAAVDSFLQQQH 186
A G P V + + +S P S+L +KAA H
Sbjct: 424 KHQAAHAGAGAGGPRPVYPCDLCGKSYSAPQSLL------------RHKAA--------H 463
Query: 187 VLGAGGGPGPTQGEEQPPQPP--LDPQNLARPPAPAQTEA 224
A P G PQPP P PP P T++
Sbjct: 464 APPAAAAEAPKDGAASAPQPPPTFPPGPYLLPPDPPTTDS 503
>gi|239746371 PREDICTED: similar to zinc finger protein 208 [Homo
sapiens]
Length = 1059
Score = 31.6 bits (70), Expect = 0.67
Identities = 54/220 (24%), Positives = 76/220 (34%), Gaps = 40/220 (18%)
Query: 13 PEEPPPAPRPSREQKCVKCKEAQPVVVIRAGDA--FCRDCFKAFYVHKFRAMLGKNRLIF 70
P P AP PS + P GD C C+K F K + L ++++I
Sbjct: 316 PPATPVAPAPSADGSAAPAGVGVPPPATGGGDGPFACPLCWKVF---KKPSHLHQHQIIH 372
Query: 71 PGEKVLLAWSGGPSSSSMVWQVLEGLSQDSAKRLRFVAGVIFVDEGAACGQSLEERSKTL 130
GEK + S S + + + SA LR G+ CG++ + S L
Sbjct: 373 TGEKPF-SCSVCSKSFNRRESLKRHVKTHSADLLRLPCGI--------CGKAFRDASYLL 423
Query: 131 AEVKPILQA-TGFPWHVVALE---EVFSLPPSVLWCSAQELVGSEGAYKAAVDSFLQQQH 186
A G P V + + +S P S+L +KAA H
Sbjct: 424 KHQAAHAGAGAGGPRPVYPCDLCGKSYSAPQSLL------------RHKAA--------H 463
Query: 187 VLGAGGGPGPTQGEEQPPQPP--LDPQNLARPPAPAQTEA 224
A P G PQPP P PP P T++
Sbjct: 464 APPAAAAEAPKDGAASAPQPPPTFPPGPYLLPPDPPTTDS 503
>gi|31543452 PX domain containing serine/threonine kinase [Homo
sapiens]
Length = 578
Score = 31.6 bits (70), Expect = 0.67
Identities = 19/54 (35%), Positives = 25/54 (46%)
Query: 194 PGPTQGEEQPPQPPLDPQNLARPPAPAQTEALSQLFCSVRTLTAKEELLQTLRN 247
P T G P PP P A P PA TEA +QL ++ LL +++N
Sbjct: 505 PPSTSGISALPPPPPPPPPPAAPLPPASTEAPAQLSSQAVNGMSRGALLSSIQN 558
>gi|126090663 zinc finger homeodomain 4 [Homo sapiens]
Length = 3571
Score = 31.6 bits (70), Expect = 0.67
Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 194 PGPTQGEEQP-PQPPLDPQNLARPPAPAQT 222
P + + QP PQPP PQ + RPP+ +QT
Sbjct: 2394 PQASTAQPQPQPQPPKQPQLIGRPPSASQT 2423
>gi|50428940 mediator complex subunit 25 [Homo sapiens]
Length = 747
Score = 31.6 bits (70), Expect = 0.67
Identities = 13/34 (38%), Positives = 16/34 (47%)
Query: 188 LGAGGGPGPTQGEEQPPQPPLDPQNLARPPAPAQ 221
+G G PGP Q ++ P PP P AP Q
Sbjct: 230 VGGGSAPGPLQSKQPVPLPPAAPSGATLSAAPQQ 263
>gi|56790935 hypothetical protein LOC85369 [Homo sapiens]
Length = 837
Score = 31.6 bits (70), Expect = 0.67
Identities = 16/39 (41%), Positives = 18/39 (46%)
Query: 190 AGGGPGPTQGEEQPPQPPLDPQNLARPPAPAQTEALSQL 228
A GGPGP + PQPP P A P P A + L
Sbjct: 4 AVGGPGPLIVNNKQPQPPPPPPPAAAQPPPGAPRAAAGL 42
>gi|122937251 lysine (K)-specific demethylase 6B [Homo sapiens]
Length = 1682
Score = 31.2 bits (69), Expect = 0.88
Identities = 21/65 (32%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
Query: 156 PPSVLWCSAQELVGSEGAYKAAVDSFLQQQHVLGAGGG-PGPTQGEEQPPQPPLDPQNLA 214
PP+ S+ GS + A SF ++ + P P + P PPL P LA
Sbjct: 546 PPTPTTSSSNSNSGSHSSSPAGPVSFPPPPYLARSIDPLPRPPSPAQNPQDPPLVPLTLA 605
Query: 215 RPPAP 219
PPAP
Sbjct: 606 LPPAP 610
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.134 0.415
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,517,333
Number of Sequences: 37866
Number of extensions: 700897
Number of successful extensions: 8139
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 115
Number of HSP's that attempted gapping in prelim test: 7447
Number of HSP's gapped (non-prelim): 855
length of query: 248
length of database: 18,247,518
effective HSP length: 100
effective length of query: 148
effective length of database: 14,460,918
effective search space: 2140215864
effective search space used: 2140215864
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.