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Search of human proteins with 239751123
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239751123 PREDICTED: hypothetical protein XP_002347725 [Homo
sapiens]
(296 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239751123 PREDICTED: hypothetical protein XP_002347725 [Homo ... 622 e-178
gi|239756637 PREDICTED: hypothetical protein [Homo sapiens] 409 e-114
gi|239745614 PREDICTED: hypothetical protein XP_002344157 [Homo ... 409 e-114
gi|239749695 PREDICTED: hypothetical protein XP_002347121 [Homo ... 49 7e-06
gi|239743961 PREDICTED: hypothetical protein XP_002344246 [Homo ... 49 7e-06
gi|239750101 PREDICTED: hypothetical protein [Homo sapiens] 40 0.002
gi|110832843 TBP-associated factor 4 [Homo sapiens] 40 0.002
gi|239755585 PREDICTED: hypothetical protein [Homo sapiens] 39 0.005
gi|4557317 annexin A11 [Homo sapiens] 38 0.009
gi|22165433 annexin A11 [Homo sapiens] 38 0.009
gi|22165431 annexin A11 [Homo sapiens] 38 0.009
gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens] 38 0.009
gi|239753673 PREDICTED: hypothetical protein [Homo sapiens] 38 0.012
gi|239751186 PREDICTED: WD repeat domain 81 [Homo sapiens] 38 0.012
gi|122937211 KIAA0368 protein [Homo sapiens] 38 0.012
gi|169202233 PREDICTED: hypothetical protein [Homo sapiens] 37 0.016
gi|169214061 PREDICTED: hypothetical protein [Homo sapiens] 37 0.027
gi|169214437 PREDICTED: hypothetical protein [Homo sapiens] 37 0.027
gi|169213353 PREDICTED: hypothetical protein [Homo sapiens] 37 0.027
gi|197276661 paired box 1 [Homo sapiens] 36 0.035
gi|189491742 ataxin 7 isoform b [Homo sapiens] 36 0.046
gi|4506797 ataxin 7 isoform a [Homo sapiens] 36 0.046
gi|145309320 forkhead box Q1 [Homo sapiens] 35 0.061
gi|239049540 FCH domain only 1 isoform c [Homo sapiens] 35 0.079
gi|239049457 FCH domain only 1 isoform b [Homo sapiens] 35 0.079
gi|29789054 FCH domain only 1 isoform b [Homo sapiens] 35 0.079
gi|239049440 FCH domain only 1 isoform a [Homo sapiens] 35 0.079
gi|169207534 PREDICTED: hypothetical protein [Homo sapiens] 35 0.079
gi|28557711 proline rich 15 [Homo sapiens] 35 0.079
gi|115430231 REC8 homolog [Homo sapiens] 35 0.10
>gi|239751123 PREDICTED: hypothetical protein XP_002347725 [Homo
sapiens]
Length = 296
Score = 622 bits (1603), Expect = e-178
Identities = 296/296 (100%), Positives = 296/296 (100%)
Query: 1 MPHPGRRWHLVNILGRASRPWGHLVQVCGRAGKRVMGCLLREGGCLLGWGRLELRAGTRD 60
MPHPGRRWHLVNILGRASRPWGHLVQVCGRAGKRVMGCLLREGGCLLGWGRLELRAGTRD
Sbjct: 1 MPHPGRRWHLVNILGRASRPWGHLVQVCGRAGKRVMGCLLREGGCLLGWGRLELRAGTRD 60
Query: 61 LVEALLSLAGSGHQVDAVWLGLVGVGEHGRVLGGRRRWGMEARLRLGRGGGRAGARPCWL 120
LVEALLSLAGSGHQVDAVWLGLVGVGEHGRVLGGRRRWGMEARLRLGRGGGRAGARPCWL
Sbjct: 61 LVEALLSLAGSGHQVDAVWLGLVGVGEHGRVLGGRRRWGMEARLRLGRGGGRAGARPCWL 120
Query: 121 LIIHAHQDLEAVPRHDALAPMQRAEPPAVQALRVLLQHRHDVTLAEGELIRGLGHIVIER 180
LIIHAHQDLEAVPRHDALAPMQRAEPPAVQALRVLLQHRHDVTLAEGELIRGLGHIVIER
Sbjct: 121 LIIHAHQDLEAVPRHDALAPMQRAEPPAVQALRVLLQHRHDVTLAEGELIRGLGHIVIER 180
Query: 181 FGQHVGHGHLAAAPGAWRAAAPAGWGLGSARAAQRPREGSRRFPAPPAPERSRTPDCPAA 240
FGQHVGHGHLAAAPGAWRAAAPAGWGLGSARAAQRPREGSRRFPAPPAPERSRTPDCPAA
Sbjct: 181 FGQHVGHGHLAAAPGAWRAAAPAGWGLGSARAAQRPREGSRRFPAPPAPERSRTPDCPAA 240
Query: 241 PAAPRMRRPRRPPHRLRGQGRVKGNSLWGFKAGSSNQKQQLGCQSRCQRPERVLES 296
PAAPRMRRPRRPPHRLRGQGRVKGNSLWGFKAGSSNQKQQLGCQSRCQRPERVLES
Sbjct: 241 PAAPRMRRPRRPPHRLRGQGRVKGNSLWGFKAGSSNQKQQLGCQSRCQRPERVLES 296
>gi|239756637 PREDICTED: hypothetical protein [Homo sapiens]
Length = 229
Score = 409 bits (1050), Expect = e-114
Identities = 200/225 (88%), Positives = 202/225 (89%), Gaps = 3/225 (1%)
Query: 1 MPHPGRRWHLVNILGRASRPWGHLVQVCGRAGKRVMGCLLREGGCLLGWGRLELRAGTRD 60
MPHPGRRWHLVNILGRASRPWGHLVQVCGRAGKRVMGCLLREGGCLLGWGRLELRAGTRD
Sbjct: 1 MPHPGRRWHLVNILGRASRPWGHLVQVCGRAGKRVMGCLLREGGCLLGWGRLELRAGTRD 60
Query: 61 LVEALLSLAGSGHQVDAVWLGLVGVGEHGRVLGGRRRWGMEARLRLGRGGGRAGARPCWL 120
LVEALLSLAGSGHQVDAVWLGLVGVGEHGRVLGGRRRWGMEARLRLGRGGGRAGARPCWL
Sbjct: 61 LVEALLSLAGSGHQVDAVWLGLVGVGEHGRVLGGRRRWGMEARLRLGRGGGRAGARPCWL 120
Query: 121 LIIHAHQDLEAVPRHDALAPMQRAEPPAVQALRVLLQHRHDVTLAEGELIRGLGHIVIER 180
LIIHAHQDLEAVPRHDALAPMQRAEPPAVQALRVLLQHRHDVTLAEGELIRGLGHIVIER
Sbjct: 121 LIIHAHQDLEAVPRHDALAPMQRAEPPAVQALRVLLQHRHDVTLAEGELIRGLGHIVIER 180
Query: 181 FGQHVGHGHLAAAPGAWRAAAPAGWGLGSARAAQRPREGSRRFPA 225
FGQHVGHGHL P + +G G AR R E R PA
Sbjct: 181 FGQHVGHGHLGRRPRGLAGSGASGLG---ARVRPRRSEAPRGVPA 222
>gi|239745614 PREDICTED: hypothetical protein XP_002344157 [Homo
sapiens]
Length = 229
Score = 409 bits (1050), Expect = e-114
Identities = 200/225 (88%), Positives = 202/225 (89%), Gaps = 3/225 (1%)
Query: 1 MPHPGRRWHLVNILGRASRPWGHLVQVCGRAGKRVMGCLLREGGCLLGWGRLELRAGTRD 60
MPHPGRRWHLVNILGRASRPWGHLVQVCGRAGKRVMGCLLREGGCLLGWGRLELRAGTRD
Sbjct: 1 MPHPGRRWHLVNILGRASRPWGHLVQVCGRAGKRVMGCLLREGGCLLGWGRLELRAGTRD 60
Query: 61 LVEALLSLAGSGHQVDAVWLGLVGVGEHGRVLGGRRRWGMEARLRLGRGGGRAGARPCWL 120
LVEALLSLAGSGHQVDAVWLGLVGVGEHGRVLGGRRRWGMEARLRLGRGGGRAGARPCWL
Sbjct: 61 LVEALLSLAGSGHQVDAVWLGLVGVGEHGRVLGGRRRWGMEARLRLGRGGGRAGARPCWL 120
Query: 121 LIIHAHQDLEAVPRHDALAPMQRAEPPAVQALRVLLQHRHDVTLAEGELIRGLGHIVIER 180
LIIHAHQDLEAVPRHDALAPMQRAEPPAVQALRVLLQHRHDVTLAEGELIRGLGHIVIER
Sbjct: 121 LIIHAHQDLEAVPRHDALAPMQRAEPPAVQALRVLLQHRHDVTLAEGELIRGLGHIVIER 180
Query: 181 FGQHVGHGHLAAAPGAWRAAAPAGWGLGSARAAQRPREGSRRFPA 225
FGQHVGHGHL P + +G G AR R E R PA
Sbjct: 181 FGQHVGHGHLGRRPRGLAGSGASGLG---ARVRPRRSEAPRGVPA 222
>gi|239749695 PREDICTED: hypothetical protein XP_002347121 [Homo
sapiens]
Length = 594
Score = 48.5 bits (114), Expect = 7e-06
Identities = 77/237 (32%), Positives = 99/237 (41%), Gaps = 39/237 (16%)
Query: 48 GWGRLELRAGTRDLVEALLSLAGSG---------HQVDAVWLGLVGVGEHGRV-----LG 93
G GRL+L AG L +L +G H+V A ++ + E GRV L
Sbjct: 110 GGGRLQLVAGALGLGAGVLDHSGLRVAVGRAHLEHEVGAALHDVLDLQEAGRVHDHELLA 169
Query: 94 GRRRWGMEARLRLGR----GGGRAGARPC-WLLIIHAHQDLEAVPRHDALAPMQRAEPPA 148
GR G AR+ G+ GGR GA L + A Q E +A R P
Sbjct: 170 GRH--GEPARVAEGQDLLEAGGRHGAGQLEGALAVAAEQVAEV----EAAGGQHR--PVG 221
Query: 149 VQALRVLLQHRHDVTLAEGELIRGLGHIVIERFG---QHVGHGHLAAAP-GAWRAAAPAG 204
++ L + V + L++ H V E QH+ HG AAA G+ R AA AG
Sbjct: 222 LEGLALDHDGHIAVEAQQALLVQAAQHCVPEVGDLDVQHLRHGGRAAAGLGSQRGAALAG 281
Query: 205 W-GLGSARAAQRPREGSRRFPAPPAPERSRTPDCPAAPAAPRMRRPRRPPHRLRGQG 260
L SA AA R P A + RT PA PAAPRM++ R P G G
Sbjct: 282 LIYLPSAAAA-----AGRHCPLRLAGQAPRTQ--PACPAAPRMQQTEREPWGGEGAG 331
Score = 31.2 bits (69), Expect = 1.1
Identities = 26/82 (31%), Positives = 31/82 (37%), Gaps = 7/82 (8%)
Query: 188 GHLAAAPGAWRAAAPAGWGLGSARAAQRPREG---SRRF---PAPPAPERSRTPDCPAA- 240
G A G+ + GWG G+ R R G R+ A P P R P+ PA
Sbjct: 444 GRARARTGSQVGSRGRGWGPGAGRVPSGGRRGVGNPERWGGEAAAPRPSRVLLPELPAVD 503
Query: 241 PAAPRMRRPRRPPHRLRGQGRV 262
PA R P R GRV
Sbjct: 504 PARDTRREPDAAAQRTELGGRV 525
>gi|239743961 PREDICTED: hypothetical protein XP_002344246 [Homo
sapiens]
Length = 594
Score = 48.5 bits (114), Expect = 7e-06
Identities = 77/237 (32%), Positives = 99/237 (41%), Gaps = 39/237 (16%)
Query: 48 GWGRLELRAGTRDLVEALLSLAGSG---------HQVDAVWLGLVGVGEHGRV-----LG 93
G GRL+L AG L +L +G H+V A ++ + E GRV L
Sbjct: 110 GGGRLQLVAGALGLGAGVLDHSGLRVAVGRAHLEHEVGAALHDVLDLQEAGRVHDHELLA 169
Query: 94 GRRRWGMEARLRLGR----GGGRAGARPC-WLLIIHAHQDLEAVPRHDALAPMQRAEPPA 148
GR G AR+ G+ GGR GA L + A Q E +A R P
Sbjct: 170 GRH--GEPARVAEGQDLLEAGGRHGAGQLEGALAVAAEQVAEV----EAAGGQHR--PVG 221
Query: 149 VQALRVLLQHRHDVTLAEGELIRGLGHIVIERFG---QHVGHGHLAAAP-GAWRAAAPAG 204
++ L + V + L++ H V E QH+ HG AAA G+ R AA AG
Sbjct: 222 LEGLALDHDGHIAVEAQQALLVQAAQHCVPEVGDLDVQHLRHGGRAAAGLGSQRGAALAG 281
Query: 205 W-GLGSARAAQRPREGSRRFPAPPAPERSRTPDCPAAPAAPRMRRPRRPPHRLRGQG 260
L SA AA R P A + RT PA PAAPRM++ R P G G
Sbjct: 282 LIYLPSAAAA-----AGRHCPLRLAGQAPRTQ--PACPAAPRMQQTEREPWGGEGAG 331
Score = 31.2 bits (69), Expect = 1.1
Identities = 26/82 (31%), Positives = 31/82 (37%), Gaps = 7/82 (8%)
Query: 188 GHLAAAPGAWRAAAPAGWGLGSARAAQRPREG---SRRF---PAPPAPERSRTPDCPAA- 240
G A G+ + GWG G+ R R G R+ A P P R P+ PA
Sbjct: 444 GRARARTGSQVGSRGRGWGPGAGRVPSGGRRGVGNPERWGGEAAAPRPSRVLLPELPAVD 503
Query: 241 PAAPRMRRPRRPPHRLRGQGRV 262
PA R P R GRV
Sbjct: 504 PARDTRREPDAAAQRTELGGRV 525
>gi|239750101 PREDICTED: hypothetical protein [Homo sapiens]
Length = 365
Score = 40.0 bits (92), Expect = 0.002
Identities = 43/134 (32%), Positives = 53/134 (39%), Gaps = 28/134 (20%)
Query: 138 LAPMQRAEPPAVQALRVLLQHRHDVTLAEGELIRGLGHIVIERFGQHVGHGHLAAAPGAW 197
L P+Q + V+ L QHRH + +L+ G G GHL + G+
Sbjct: 232 LLPVQSGQQRQVEQL----QHRHQHERGQQQLVEGAPD----------GVGHLHGSRGSG 277
Query: 198 RAAA-------PAGWGLGSARAAQR----PREGSRRFPAPPAPERSRTPDCPA--APAAP 244
RAA PA + A+R PR R P P P R P PA APA P
Sbjct: 278 RAATTTRPQTTPAAASPDLPQPAERSRGEPRPAEPRAPPRPPPAARRPPPPPAPGAPARP 337
Query: 245 -RMRRPRRPPHRLR 257
R RR P R R
Sbjct: 338 LRGRRSHGPAARPR 351
>gi|110832843 TBP-associated factor 4 [Homo sapiens]
Length = 1085
Score = 40.0 bits (92), Expect = 0.002
Identities = 30/73 (41%), Positives = 35/73 (47%), Gaps = 7/73 (9%)
Query: 182 GQHVGHGHLAAAPGAWRAAAPAGWGLGSA-----RAAQRPREGSRRFPAPPAPERSRTPD 236
G HV G A A GA AAPA G+A RP G + P PP+P R P
Sbjct: 59 GNHVVSGSPAGAAGAG-PAAPAEGAPGAAPEPPPAGRARPGGGGPQRPGPPSPRRPLVPA 117
Query: 237 CPAAPAAPRMRRP 249
PA PAA ++R P
Sbjct: 118 GPAPPAA-KLRPP 129
Score = 28.5 bits (62), Expect = 7.4
Identities = 31/116 (26%), Positives = 39/116 (33%), Gaps = 4/116 (3%)
Query: 140 PMQRAEPPAVQALR--VLLQHRHDVTLAEGELIRGLGHIVIERFGQHVGHGHLAAAPGAW 197
P + A P A Q L L + H L+ G + + G + P
Sbjct: 186 PGKPAGPGAAQTLNGSAALLNSHHAAAPAVSLVNN-GPAALLPLPKPAAPGTVIQTPPFV 244
Query: 198 RAAAPAGWGLGSARAAQRPREGSRRFPAPPAPERSRTPDCPAAPAAPRMRRPRRPP 253
AAAP S AA P + P PP P + P PA P P PP
Sbjct: 245 GAAAPPAPAAPSPPAAPAPAAPAAA-PPPPPPAPATLARPPGHPAGPPTAAPAVPP 299
Score = 28.1 bits (61), Expect = 9.7
Identities = 21/58 (36%), Positives = 23/58 (39%), Gaps = 6/58 (10%)
Query: 193 APGAWRAAAPAGWGLGSARAAQRPREGSRRFP------APPAPERSRTPDCPAAPAAP 244
APGA PAG QRP S R P APPA + P+ A AP
Sbjct: 82 APGAAPEPPPAGRARPGGGGPQRPGPPSPRRPLVPAGPAPPAAKLRPPPEGSAGSCAP 139
>gi|239755585 PREDICTED: hypothetical protein [Homo sapiens]
Length = 350
Score = 38.9 bits (89), Expect = 0.005
Identities = 37/116 (31%), Positives = 46/116 (39%), Gaps = 27/116 (23%)
Query: 138 LAPMQRAEPPAVQALRVLLQHRHDVTLAEGELIRGLGHIVIERFGQHVGHGHLAAAPGAW 197
L P+Q + V+ L QHRH + +L+ G G GHL + G+
Sbjct: 232 LLPVQSGQQRQVEQL----QHRHQHERGQQQLVEGAPD----------GVGHLHGSRGSG 277
Query: 198 RAAAPAGWGLGSARAAQRPREGSRRFPAPPAPERSRTPDCPAAPAAPRMRRPRRPP 253
RAA + R P S P P ERSR PA P AP PR PP
Sbjct: 278 RAAT-------TTRPQTTPAAASPDLPQP--AERSRGEPRPAEPRAP----PRPPP 320
>gi|4557317 annexin A11 [Homo sapiens]
Length = 505
Score = 38.1 bits (87), Expect = 0.009
Identities = 23/61 (37%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Query: 193 APGAWRAAAPAGWGLGSARAAQRPREGSRRFPAPPAPERSRTPDCPAAPAAPRMRRPRRP 252
APGA P G G G +AQ+P +P P SR P P P AP +P P
Sbjct: 77 APGAGYPPVPPG-GFGQPPSAQQPVPPYGMYPPPGGNPPSRMPSYPPYPGAPVPGQPMPP 135
Query: 253 P 253
P
Sbjct: 136 P 136
>gi|22165433 annexin A11 [Homo sapiens]
Length = 505
Score = 38.1 bits (87), Expect = 0.009
Identities = 23/61 (37%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Query: 193 APGAWRAAAPAGWGLGSARAAQRPREGSRRFPAPPAPERSRTPDCPAAPAAPRMRRPRRP 252
APGA P G G G +AQ+P +P P SR P P P AP +P P
Sbjct: 77 APGAGYPPVPPG-GFGQPPSAQQPVPPYGMYPPPGGNPPSRMPSYPPYPGAPVPGQPMPP 135
Query: 253 P 253
P
Sbjct: 136 P 136
>gi|22165431 annexin A11 [Homo sapiens]
Length = 505
Score = 38.1 bits (87), Expect = 0.009
Identities = 23/61 (37%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Query: 193 APGAWRAAAPAGWGLGSARAAQRPREGSRRFPAPPAPERSRTPDCPAAPAAPRMRRPRRP 252
APGA P G G G +AQ+P +P P SR P P P AP +P P
Sbjct: 77 APGAGYPPVPPG-GFGQPPSAQQPVPPYGMYPPPGGNPPSRMPSYPPYPGAPVPGQPMPP 135
Query: 253 P 253
P
Sbjct: 136 P 136
>gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens]
Length = 904
Score = 38.1 bits (87), Expect = 0.009
Identities = 30/77 (38%), Positives = 37/77 (48%), Gaps = 10/77 (12%)
Query: 184 HVGHGHLAAAPGAWRAAAPAGWGLGSARAAQR---PREGSRRFPAPPAPERSRTPDCPAA 240
HV +G + G R +P+ S R Q+ PR RR P+PP R R+P PA
Sbjct: 511 HVKNGEV----GRRRRHSPSRSASPSPRKRQKETSPRGRRRRSPSPPPTRRRRSPS-PAP 565
Query: 241 PAAPRMRRPRRPPHRLR 257
P PR RR PP R R
Sbjct: 566 P--PRRRRTPTPPPRRR 580
Score = 33.1 bits (74), Expect = 0.30
Identities = 20/46 (43%), Positives = 22/46 (47%), Gaps = 6/46 (13%)
Query: 211 RAAQRPREGSRRFPAP-PAPERSRTPDCPAAPAAPRMRRPRRPPHR 255
R+ P RR P+P P P R RTP P PR R P PP R
Sbjct: 548 RSPSPPPTRRRRSPSPAPPPRRRRTPTPP-----PRRRTPSPPPRR 588
Score = 30.8 bits (68), Expect = 1.5
Identities = 22/103 (21%), Positives = 46/103 (44%), Gaps = 6/103 (5%)
Query: 198 RAAAPAGWGL----GSARAAQRPREGSRRFPAPPAPERSRTPDCPAAPAAP--RMRRPRR 251
+AA+P+ + S + P +++ PAPP+P +S++P +PA P + + P
Sbjct: 735 KAASPSPQSVRRVSSSRSVSGSPEPAAKKPPAPPSPVQSQSPSTNWSPAVPVKKAKSPTP 794
Query: 252 PPHRLRGQGRVKGNSLWGFKAGSSNQKQQLGCQSRCQRPERVL 294
P R + G K ++K + + + + E+ +
Sbjct: 795 SPSPPRNSDQEGGGKKKKKKKDKKHKKDKKHKKHKKHKKEKAV 837
Score = 28.5 bits (62), Expect = 7.4
Identities = 24/66 (36%), Positives = 29/66 (43%), Gaps = 9/66 (13%)
Query: 215 RPREGSRRFPAPPAPERSRTPDCPAAPAAPRMRRPRRPPHRLRGQGRVKGNSLWGFKAGS 274
R R RR P+P R RTP P PR RR R P R R SL G + S
Sbjct: 312 RRRPSPRRRPSP----RRRTPP-RRMPPPPRHRRSRSPVRRRRRSSA----SLSGSSSSS 362
Query: 275 SNQKQQ 280
S+ + +
Sbjct: 363 SSSRSR 368
Score = 28.1 bits (61), Expect = 9.7
Identities = 19/56 (33%), Positives = 23/56 (41%), Gaps = 10/56 (17%)
Query: 211 RAAQRPREGSRRFPAPPAPERSRTPDCPAAPAAPRMRRPRRPPHRLRGQGRVKGNS 266
R + R R RR P PP RSR+P +RR RR L G +S
Sbjct: 320 RPSPRRRTPPRRMPPPPRHRRSRSP----------VRRRRRSSASLSGSSSSSSSS 365
>gi|239753673 PREDICTED: hypothetical protein [Homo sapiens]
Length = 380
Score = 37.7 bits (86), Expect = 0.012
Identities = 65/230 (28%), Positives = 79/230 (34%), Gaps = 47/230 (20%)
Query: 83 VGVGEHGRVLGGRRRWGMEARLRLGRGGGRAGARPCWLLIIHAHQDLEAVPRHDALAPMQ 142
V G+H G RRW RGG R G P A + PR L P
Sbjct: 53 VADGQHVDPAGAGRRW---------RGGLRGGFAP-------AAARPRSAPRRRILGPGG 96
Query: 143 RAEPPAVQALRVLLQHRH---DVTLAEGELIRGLGHIVIERF-------------GQHVG 186
R V ++L RH + A G L G R +HVG
Sbjct: 97 RGPQAEVP---LVLSERHVPAGIPGARGRLAPARGGAARARLLAVEVRVAVQSERHRHVG 153
Query: 187 HGHLAAAPGAWRAAAPAGWGLGSARAAQRPREGSRRF------PA--PPAPERSRTPDCP 238
L AP AA G S A+RP G+RR PA PP P R P
Sbjct: 154 AVQLVPAPRQAAQAADTGPRHASP-GARRPAPGARRSRPRLLRPASPPPRPAPRRRSTAP 212
Query: 239 AAPAA-PRMRRPRRPPHRLRGQGRVKGNSLWGFKAGSSNQKQQLGCQSRC 287
P R RR PH L G G + L G + G ++Q ++ C
Sbjct: 213 RHEGGRPGRGRTRRQPH-LAGAGCAR-LELEGARMGERLHRRQGAPETAC 260
>gi|239751186 PREDICTED: WD repeat domain 81 [Homo sapiens]
Length = 2240
Score = 37.7 bits (86), Expect = 0.012
Identities = 25/60 (41%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Query: 194 PGAWRAAAPAGWGLGSARAAQRPREGSRRFPAPPAPERSRTPDCPAAPA-APRMRRPRRP 252
P W G +A AQ PR G +R P PP R R P +APA PR +PRRP
Sbjct: 217 PSRWSPVLAPGSLCPAAPGAQDPRRG-KRAPRPPL-RRRRLPAAASAPAPVPRPSQPRRP 274
Score = 30.0 bits (66), Expect = 2.5
Identities = 29/93 (31%), Positives = 35/93 (37%), Gaps = 24/93 (25%)
Query: 190 LAAAPGAWRAAAPAGWGLGSARAAQRPREGSRRFP-----APPAPERSRTPDCPAAPAA- 243
L +AP R AP W ARAA R G+ P APP + PA+P A
Sbjct: 103 LFSAPSTHRLQAPISWRRRDARAA-NARPGANHRPLLGNVAPPTRGPTGPRPGPASPGAL 161
Query: 244 -----------------PRMRRPRRPPHRLRGQ 259
R+ + RR P RLR Q
Sbjct: 162 ALIALRVSDPLRKALRQTRVLKSRRKPRRLRLQ 194
>gi|122937211 KIAA0368 protein [Homo sapiens]
Length = 2017
Score = 37.7 bits (86), Expect = 0.012
Identities = 29/81 (35%), Positives = 33/81 (40%), Gaps = 2/81 (2%)
Query: 187 HGHLAAAPGAWRAAAPAGWGLGSARAAQRPREGSR-RFPAPPAPERSRTPDCPAAPAAPR 245
HG AAP P L S R AQRPR G R R + P + C A A R
Sbjct: 104 HGLRRAAPRGPARRTPRSTALTSRRRAQRPRHGDRLRLRSEARPRAAGDWPC-ARGGAVR 162
Query: 246 MRRPRRPPHRLRGQGRVKGNS 266
RP RPP +G G +
Sbjct: 163 PGRPHRPPRVESARGAHAGRA 183
>gi|169202233 PREDICTED: hypothetical protein [Homo sapiens]
Length = 381
Score = 37.4 bits (85), Expect = 0.016
Identities = 40/129 (31%), Positives = 50/129 (38%), Gaps = 29/129 (22%)
Query: 138 LAPMQRAEPPAVQALRVLLQHRHDVTLAEGELIRGLGHIVIERFGQHVGHGHLAAAPGAW 197
L P+Q + V+ L QHRH + +L+ G G GHL + G+
Sbjct: 232 LLPVQSGQQRQVEQL----QHRHQHERGQQQLVEGAPD----------GVGHLHGSRGSG 277
Query: 198 RAAA-------PAGWGLGSARAAQR----PREGSRRFPAPPAPERSRTPDCPAAPAAPRM 246
RAA PA + A+R PR R P P P R P PA AP
Sbjct: 278 RAATTTRPQTTPAAASPDLPQPAERSRGEPRPAEPRAPPRPPPAARRPP--PAT--APSP 333
Query: 247 RRPRRPPHR 255
RR PP R
Sbjct: 334 RRAGSPPTR 342
>gi|169214061 PREDICTED: hypothetical protein [Homo sapiens]
Length = 384
Score = 36.6 bits (83), Expect = 0.027
Identities = 29/80 (36%), Positives = 34/80 (42%), Gaps = 8/80 (10%)
Query: 211 RAAQRPREGSRRFPAPPAPERSRTPDCPAAPAAPRMRRPRRPPHRLRGQGRVKGNSLWGF 270
R A R G+ PP P S P PAA AAP +P + PH RGQ R+
Sbjct: 183 RKAGAERAGAGPTLTPPLPAGSPDPPSPAATAAP---QPEQRPHLSRGQWRLLPRRRPER 239
Query: 271 KAGSSNQKQQLGCQSRCQRP 290
AGS+ C SR P
Sbjct: 240 AAGSAG-----SCSSRRALP 254
>gi|169214437 PREDICTED: hypothetical protein [Homo sapiens]
Length = 384
Score = 36.6 bits (83), Expect = 0.027
Identities = 29/80 (36%), Positives = 34/80 (42%), Gaps = 8/80 (10%)
Query: 211 RAAQRPREGSRRFPAPPAPERSRTPDCPAAPAAPRMRRPRRPPHRLRGQGRVKGNSLWGF 270
R A R G+ PP P S P PAA AAP +P + PH RGQ R+
Sbjct: 183 RKAGAERAGAGPTLTPPLPAGSPDPPSPAATAAP---QPEQRPHLSRGQWRLLPRRRPER 239
Query: 271 KAGSSNQKQQLGCQSRCQRP 290
AGS+ C SR P
Sbjct: 240 AAGSAG-----SCSSRRALP 254
>gi|169213353 PREDICTED: hypothetical protein [Homo sapiens]
Length = 384
Score = 36.6 bits (83), Expect = 0.027
Identities = 29/80 (36%), Positives = 34/80 (42%), Gaps = 8/80 (10%)
Query: 211 RAAQRPREGSRRFPAPPAPERSRTPDCPAAPAAPRMRRPRRPPHRLRGQGRVKGNSLWGF 270
R A R G+ PP P S P PAA AAP +P + PH RGQ R+
Sbjct: 183 RKAGAERAGAGPTLTPPLPAGSPDPPSPAATAAP---QPEQRPHLSRGQWRLLPRRRPER 239
Query: 271 KAGSSNQKQQLGCQSRCQRP 290
AGS+ C SR P
Sbjct: 240 AAGSAG-----SCSSRRALP 254
>gi|197276661 paired box 1 [Homo sapiens]
Length = 534
Score = 36.2 bits (82), Expect = 0.035
Identities = 31/86 (36%), Positives = 35/86 (40%), Gaps = 15/86 (17%)
Query: 186 GHGHLAAAPGAWRAA-----APAGWGL----GSARAAQRPREGSRRFPAPPAPERSRTP- 235
G G+LA P W A AP G G+ G AA + SR P R RTP
Sbjct: 383 GGGYLAPGP-PWPPAQGPPLAPPGAGVAVHGGELAAAMTFKHPSREGSLPAPAARPRTPS 441
Query: 236 ----DCPAAPAAPRMRRPRRPPHRLR 257
DCP+ P PR PR R R
Sbjct: 442 VAYTDCPSRPRPPRGSSPRTRARRER 467
>gi|189491742 ataxin 7 isoform b [Homo sapiens]
Length = 945
Score = 35.8 bits (81), Expect = 0.046
Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 6/52 (11%)
Query: 198 RAAAPAGWGLGSARAAQRPREGSRRFPAPPAPERSRTPDCPAAPAAPRMRRP 249
RAAA AG G +A A Q+ ++ ++ P PP P+R + P P PR RP
Sbjct: 15 RAAAAAG-GAAAAAARQQQQQQQQQQPPPPQPQRQQHP-----PPPPRRTRP 60
>gi|4506797 ataxin 7 isoform a [Homo sapiens]
Length = 892
Score = 35.8 bits (81), Expect = 0.046
Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 6/52 (11%)
Query: 198 RAAAPAGWGLGSARAAQRPREGSRRFPAPPAPERSRTPDCPAAPAAPRMRRP 249
RAAA AG G +A A Q+ ++ ++ P PP P+R + P P PR RP
Sbjct: 15 RAAAAAG-GAAAAAARQQQQQQQQQQPPPPQPQRQQHP-----PPPPRRTRP 60
>gi|145309320 forkhead box Q1 [Homo sapiens]
Length = 403
Score = 35.4 bits (80), Expect = 0.061
Identities = 20/46 (43%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Query: 216 PREGSRRFPAPPAPERSRTPDCPAAPAAPRMRRPRRPPHRLRGQGR 261
P G R AP P + P PAAPA+PRMR P R R G+
Sbjct: 223 PAPGLRPEEAPGLP--AAPPPAPAAPASPRMRSPARQEERASPAGK 266
>gi|239049540 FCH domain only 1 isoform c [Homo sapiens]
Length = 839
Score = 35.0 bits (79), Expect = 0.079
Identities = 24/63 (38%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
Query: 190 LAAAPGAWRAAAPAGWGLGSARAAQRPREGSRRFPAPPAPERSRTPDCPAAPAAPRMRRP 249
LA++PG W A AG L A A REG APP RSR CP + + R
Sbjct: 477 LASSPGPWGLEALAGGDLMPAPADPTAREG---LAAPPRRLRSRKVSCPLTRSNGDLSRS 533
Query: 250 RRP 252
P
Sbjct: 534 LSP 536
>gi|239049457 FCH domain only 1 isoform b [Homo sapiens]
Length = 889
Score = 35.0 bits (79), Expect = 0.079
Identities = 24/63 (38%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
Query: 190 LAAAPGAWRAAAPAGWGLGSARAAQRPREGSRRFPAPPAPERSRTPDCPAAPAAPRMRRP 249
LA++PG W A AG L A A REG APP RSR CP + + R
Sbjct: 527 LASSPGPWGLEALAGGDLMPAPADPTAREG---LAAPPRRLRSRKVSCPLTRSNGDLSRS 583
Query: 250 RRP 252
P
Sbjct: 584 LSP 586
>gi|29789054 FCH domain only 1 isoform b [Homo sapiens]
Length = 889
Score = 35.0 bits (79), Expect = 0.079
Identities = 24/63 (38%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
Query: 190 LAAAPGAWRAAAPAGWGLGSARAAQRPREGSRRFPAPPAPERSRTPDCPAAPAAPRMRRP 249
LA++PG W A AG L A A REG APP RSR CP + + R
Sbjct: 527 LASSPGPWGLEALAGGDLMPAPADPTAREG---LAAPPRRLRSRKVSCPLTRSNGDLSRS 583
Query: 250 RRP 252
P
Sbjct: 584 LSP 586
>gi|239049440 FCH domain only 1 isoform a [Homo sapiens]
Length = 891
Score = 35.0 bits (79), Expect = 0.079
Identities = 24/63 (38%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
Query: 190 LAAAPGAWRAAAPAGWGLGSARAAQRPREGSRRFPAPPAPERSRTPDCPAAPAAPRMRRP 249
LA++PG W A AG L A A REG APP RSR CP + + R
Sbjct: 527 LASSPGPWGLEALAGGDLMPAPADPTAREG---LAAPPRRLRSRKVSCPLTRSNGDLSRS 583
Query: 250 RRP 252
P
Sbjct: 584 LSP 586
>gi|169207534 PREDICTED: hypothetical protein [Homo sapiens]
Length = 183
Score = 35.0 bits (79), Expect = 0.079
Identities = 25/66 (37%), Positives = 30/66 (45%), Gaps = 10/66 (15%)
Query: 192 AAPGAWRAAAPAGWGLGSARAAQRPREGSRRFPAPPAPERSRTPDCPAAPAAPRMRRPRR 251
A+P R A P + RPR S PAPP P SR P + AAP + P R
Sbjct: 81 ASPDRRRPAIPRA-------SPDRPRPIS---PAPPGPPTSRQPPRISVAAAPVLPAPPR 130
Query: 252 PPHRLR 257
PP + R
Sbjct: 131 PPTQRR 136
>gi|28557711 proline rich 15 [Homo sapiens]
Length = 129
Score = 35.0 bits (79), Expect = 0.079
Identities = 24/97 (24%), Positives = 41/97 (42%), Gaps = 2/97 (2%)
Query: 199 AAAPAGWGLGSARAAQRPREGSRRFPAPPAPERSR-TPDCPAAPAAPRMRRPRRPPHRLR 257
A + W + ++ +E + P P P TP P +P R + P+ L
Sbjct: 7 AGSSGPWWKSLTNSRKKSKEAAVGVPPPAQPAPGEPTPPAPPSPDWTSSSRENQHPNLLG 66
Query: 258 GQGRV-KGNSLWGFKAGSSNQKQQLGCQSRCQRPERV 293
G G K + L+G K+GSS + ++ R + +V
Sbjct: 67 GAGEPPKPDKLYGDKSGSSRRNLKISRSGRFKEKRKV 103
>gi|115430231 REC8 homolog [Homo sapiens]
Length = 547
Score = 34.7 bits (78), Expect = 0.10
Identities = 21/48 (43%), Positives = 23/48 (47%), Gaps = 6/48 (12%)
Query: 204 GWGLGSARAAQRPREGSRRFPAPPAPERSRTPDCPAAPAAPRMRRPRR 251
GW G+ P E R PAPP+PER P P PR RR RR
Sbjct: 263 GWEPGALLMEVTPPE-ELRLPAPPSPERR-----PPVPPPPRRRRRRR 304
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.323 0.140 0.467
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,848,309
Number of Sequences: 37866
Number of extensions: 754673
Number of successful extensions: 6066
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 320
Number of HSP's that attempted gapping in prelim test: 5324
Number of HSP's gapped (non-prelim): 912
length of query: 296
length of database: 18,247,518
effective HSP length: 102
effective length of query: 194
effective length of database: 14,385,186
effective search space: 2790726084
effective search space used: 2790726084
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.