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Search of human proteins with 239751024
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239751024 PREDICTED: hypothetical protein XP_002347677 [Homo
sapiens]
(159 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239751024 PREDICTED: hypothetical protein XP_002347677 [Homo ... 331 2e-91
gi|239745453 PREDICTED: hypothetical protein XP_002343495 [Homo ... 330 2e-91
gi|215820619 zinc finger protein 646 [Homo sapiens] 37 0.007
gi|24497589 aristaless related homeobox [Homo sapiens] 35 0.035
gi|239741995 PREDICTED: hypothetical protein XP_002342368 [Homo ... 34 0.060
gi|5453936 POU class 3 homeobox 3 [Homo sapiens] 32 0.23
gi|117938768 GNAS complex locus alex [Homo sapiens] 32 0.30
gi|239749709 PREDICTED: hypothetical protein [Homo sapiens] 32 0.30
gi|171543895 ataxin 2 [Homo sapiens] 32 0.30
gi|182507165 thymus expressed gene 3-like [Homo sapiens] 32 0.30
gi|57529246 ubiquitin thioesterase 19 [Homo sapiens] 31 0.39
gi|148747864 JAW1-related protein isoform a [Homo sapiens] 31 0.39
gi|154091332 JAW1-related protein isoform b [Homo sapiens] 31 0.39
gi|148728182 JAW1-related protein isoform b [Homo sapiens] 31 0.39
gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 31 0.51
gi|239755232 PREDICTED: hypothetical protein [Homo sapiens] 31 0.51
gi|239749768 PREDICTED: hypothetical protein [Homo sapiens] 31 0.51
gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo sapi... 31 0.51
gi|239744027 PREDICTED: hypothetical protein XP_002343007 [Homo ... 31 0.51
gi|41352718 deltex homolog 1 [Homo sapiens] 31 0.51
gi|22538470 eomesodermin [Homo sapiens] 30 0.67
gi|156416026 zinc finger protein 219 [Homo sapiens] 30 0.67
gi|156415998 zinc finger protein 219 [Homo sapiens] 30 0.67
gi|148276998 zinc finger protein 628 [Homo sapiens] 30 0.67
gi|156415996 zinc finger protein 219 [Homo sapiens] 30 0.67
gi|55769539 hypothetical protein LOC221416 [Homo sapiens] 30 0.67
gi|239757559 PREDICTED: hypothetical protein [Homo sapiens] 30 0.87
gi|169209173 PREDICTED: hypothetical protein [Homo sapiens] 30 0.87
gi|113425821 PREDICTED: hypothetical protein [Homo sapiens] 30 0.87
gi|113425445 PREDICTED: hypothetical protein [Homo sapiens] 30 0.87
>gi|239751024 PREDICTED: hypothetical protein XP_002347677 [Homo
sapiens]
Length = 159
Score = 331 bits (848), Expect = 2e-91
Identities = 159/159 (100%), Positives = 159/159 (100%)
Query: 1 MSHRSLPRELNPKTILRDKGLHSVWGAPRVNYVCEKLPYPLGSVFTCSQKFWIADQSCSD 60
MSHRSLPRELNPKTILRDKGLHSVWGAPRVNYVCEKLPYPLGSVFTCSQKFWIADQSCSD
Sbjct: 1 MSHRSLPRELNPKTILRDKGLHSVWGAPRVNYVCEKLPYPLGSVFTCSQKFWIADQSCSD 60
Query: 61 MLGSVALLLTEPQLQRRCRARGTLGRLGSRHSRRHRGRRHRSSPDAAAAGATASSAAVAS 120
MLGSVALLLTEPQLQRRCRARGTLGRLGSRHSRRHRGRRHRSSPDAAAAGATASSAAVAS
Sbjct: 61 MLGSVALLLTEPQLQRRCRARGTLGRLGSRHSRRHRGRRHRSSPDAAAAGATASSAAVAS 120
Query: 121 WRSPLLTARQERWTRDGAGPLAPRPPQAPPPRGTGRNIS 159
WRSPLLTARQERWTRDGAGPLAPRPPQAPPPRGTGRNIS
Sbjct: 121 WRSPLLTARQERWTRDGAGPLAPRPPQAPPPRGTGRNIS 159
>gi|239745453 PREDICTED: hypothetical protein XP_002343495 [Homo
sapiens]
Length = 159
Score = 330 bits (847), Expect = 2e-91
Identities = 158/159 (99%), Positives = 159/159 (100%)
Query: 1 MSHRSLPRELNPKTILRDKGLHSVWGAPRVNYVCEKLPYPLGSVFTCSQKFWIADQSCSD 60
MSHRSLPRELNPKT+LRDKGLHSVWGAPRVNYVCEKLPYPLGSVFTCSQKFWIADQSCSD
Sbjct: 1 MSHRSLPRELNPKTVLRDKGLHSVWGAPRVNYVCEKLPYPLGSVFTCSQKFWIADQSCSD 60
Query: 61 MLGSVALLLTEPQLQRRCRARGTLGRLGSRHSRRHRGRRHRSSPDAAAAGATASSAAVAS 120
MLGSVALLLTEPQLQRRCRARGTLGRLGSRHSRRHRGRRHRSSPDAAAAGATASSAAVAS
Sbjct: 61 MLGSVALLLTEPQLQRRCRARGTLGRLGSRHSRRHRGRRHRSSPDAAAAGATASSAAVAS 120
Query: 121 WRSPLLTARQERWTRDGAGPLAPRPPQAPPPRGTGRNIS 159
WRSPLLTARQERWTRDGAGPLAPRPPQAPPPRGTGRNIS
Sbjct: 121 WRSPLLTARQERWTRDGAGPLAPRPPQAPPPRGTGRNIS 159
>gi|215820619 zinc finger protein 646 [Homo sapiens]
Length = 1832
Score = 37.0 bits (84), Expect = 0.007
Identities = 24/69 (34%), Positives = 28/69 (40%), Gaps = 10/69 (14%)
Query: 90 RHSRRHRGRRHRSSPDAAAAGATASSAAVASWRSPLLTARQERWTRDGAGPLAPRPPQAP 149
RHSRR R RRHR A+ G A A SW L D G +P+ P
Sbjct: 665 RHSRR-RSRRHRKRAGGASGGREAKLLAAESWTREL---------EDNEGLESPQDPSGE 714
Query: 150 PPRGTGRNI 158
P G N+
Sbjct: 715 SPHGAEGNL 723
>gi|24497589 aristaless related homeobox [Homo sapiens]
Length = 562
Score = 34.7 bits (78), Expect = 0.035
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 6/58 (10%)
Query: 104 PDAAAAGATASSAAVASW------RSPLLTARQERWTRDGAGPLAPRPPQAPPPRGTG 155
PD A A A A++AA A+W ++P ++ + + R+ P P PP G G
Sbjct: 139 PDGAGAAAAAAAAAAAAWDTLKISQAPQVSISRSKSYRENGAPFVPPPPALDELGGPG 196
>gi|239741995 PREDICTED: hypothetical protein XP_002342368 [Homo
sapiens]
Length = 224
Score = 33.9 bits (76), Expect = 0.060
Identities = 33/92 (35%), Positives = 43/92 (46%), Gaps = 8/92 (8%)
Query: 72 PQLQRRCRARGTLGR-LGSRHS----RRHRGRRHRSSPDAAAAGATASSAAVA-SWRSPL 125
PQ+ R RG G LG+R + RR R R S AA A S+A + R+P
Sbjct: 55 PQVAARGGGRGWEGGGLGARRAVTAARRGEWGRARESRSAALASPRVSNAPTTPASRNPG 114
Query: 126 LTARQERWTRDGAGPLAPR--PPQAPPPRGTG 155
L A++ + R AG R PP+ PP R G
Sbjct: 115 LRAQERQSGRRAAGGGGARAEPPRVPPCRPAG 146
>gi|5453936 POU class 3 homeobox 3 [Homo sapiens]
Length = 500
Score = 32.0 bits (71), Expect = 0.23
Identities = 24/80 (30%), Positives = 35/80 (43%), Gaps = 11/80 (13%)
Query: 81 RGTLGRLGSRHSRRHRGRRHRSSPDAAAAGATASSAAVASWRSPLLTARQERWTRDGAGP 140
+G + H H + + P AAAA A A++AAV + SP W+ G
Sbjct: 79 QGAMAASNGGHMLSHAHQWVTALPHAAAAAAAAAAAAVEA-SSP--------WSGSAVGM 129
Query: 141 LAP--RPPQAPPPRGTGRNI 158
+PPQ PPP G ++
Sbjct: 130 AGSPQQPPQPPPPPPQGPDV 149
>gi|117938768 GNAS complex locus alex [Homo sapiens]
Length = 626
Score = 31.6 bits (70), Expect = 0.30
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 121 WRSPLLTARQERWTRDGAGPLAPRPPQAPPPRG 153
W+ PL+ R+E++ G PL P PQ P G
Sbjct: 299 WKEPLMPRREEKYPLRGTDPLPPGQPQRIPLPG 331
>gi|239749709 PREDICTED: hypothetical protein [Homo sapiens]
Length = 178
Score = 31.6 bits (70), Expect = 0.30
Identities = 35/92 (38%), Positives = 41/92 (44%), Gaps = 12/92 (13%)
Query: 72 PQLQR-RCRARGTLGRLGSRHSRRHRGRRHRSS-------PDAAAAGATASSAAVASWRS 123
PQ +R R A+G +G+ GS+ + R R H AA AGA A A RS
Sbjct: 89 PQGERLRAMAKGGVGK-GSQGAERQASRPHAEHRLGLSHLTRAAGAGAARRRAGAARTRS 147
Query: 124 PL-LTARQERWTRDGAGPLAP-RPPQAPPPRG 153
P A R R G GP AP R P A P G
Sbjct: 148 PKGCRAGAARLERAG-GPAAPARVPPARCPAG 178
>gi|171543895 ataxin 2 [Homo sapiens]
Length = 1313
Score = 31.6 bits (70), Expect = 0.30
Identities = 20/53 (37%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
Query: 103 SPDAAAAGATASSAAVASWRSPLLTARQERWTRDGAGPLAPRPPQAPPPRGTG 155
SP A ++A WRS AR+ GA P P P APPP G G
Sbjct: 10 SPAVATESRRFAAARWPGWRSLQRPARRSGRGGGGAAP-GPYPSAAPPPPGPG 61
>gi|182507165 thymus expressed gene 3-like [Homo sapiens]
Length = 629
Score = 31.6 bits (70), Expect = 0.30
Identities = 22/77 (28%), Positives = 31/77 (40%), Gaps = 7/77 (9%)
Query: 75 QRRCRARGTLGRLGSRHSRRHRGRRHRSSPDAAAAGATASSAAVASWRSPLLTARQERWT 134
+ R RA G GR+ RR R ++S + ++AV S TA +E
Sbjct: 394 RERPRAAGRRGRMAEASGRRGSPRARKASRSQSETSLLGRASAVPSGPPKYPTAEREE-- 451
Query: 135 RDGAGPLAPRPPQAPPP 151
P PRP + P P
Sbjct: 452 -----PRPPRPRRGPAP 463
>gi|57529246 ubiquitin thioesterase 19 [Homo sapiens]
Length = 1318
Score = 31.2 bits (69), Expect = 0.39
Identities = 25/71 (35%), Positives = 30/71 (42%), Gaps = 6/71 (8%)
Query: 86 RLGSRHSRRHRGRRHRSSPDAAAAGATASSAAVASWRSPLLTARQERWTRDGAGPLAPRP 145
R S R R PD A A+S A W+ L A +E +G+GPL P
Sbjct: 1213 RRNSPVERPPRAGHSEHHPDLGPAAEAAASQASRIWQE--LEAEEEP-VPEGSGPLGPWG 1269
Query: 146 PQ---APPPRG 153
PQ P PRG
Sbjct: 1270 PQDWVGPLPRG 1280
>gi|148747864 JAW1-related protein isoform a [Homo sapiens]
Length = 903
Score = 31.2 bits (69), Expect = 0.39
Identities = 26/77 (33%), Positives = 37/77 (48%), Gaps = 4/77 (5%)
Query: 86 RLGSRHSRRHRGRRHRSSP---DAAAAGATASSAAVASWRSPLLTARQERWTRDGAGPLA 142
+L S RGR+ RSSP +A + + SA+ S RS LT +GP +
Sbjct: 159 KLVSERFLTRRGRKSRSSPGDSPSAVSPNLSPSASPTSSRSNSLTVPTPPGLDVCSGPPS 218
Query: 143 PRPPQAPPPRGTGRNIS 159
P P APP +G ++S
Sbjct: 219 PL-PGAPPQKGDEADVS 234
>gi|154091332 JAW1-related protein isoform b [Homo sapiens]
Length = 821
Score = 31.2 bits (69), Expect = 0.39
Identities = 26/77 (33%), Positives = 37/77 (48%), Gaps = 4/77 (5%)
Query: 86 RLGSRHSRRHRGRRHRSSP---DAAAAGATASSAAVASWRSPLLTARQERWTRDGAGPLA 142
+L S RGR+ RSSP +A + + SA+ S RS LT +GP +
Sbjct: 77 KLVSERFLTRRGRKSRSSPGDSPSAVSPNLSPSASPTSSRSNSLTVPTPPGLDVCSGPPS 136
Query: 143 PRPPQAPPPRGTGRNIS 159
P P APP +G ++S
Sbjct: 137 PL-PGAPPQKGDEADVS 152
>gi|148728182 JAW1-related protein isoform b [Homo sapiens]
Length = 821
Score = 31.2 bits (69), Expect = 0.39
Identities = 26/77 (33%), Positives = 37/77 (48%), Gaps = 4/77 (5%)
Query: 86 RLGSRHSRRHRGRRHRSSP---DAAAAGATASSAAVASWRSPLLTARQERWTRDGAGPLA 142
+L S RGR+ RSSP +A + + SA+ S RS LT +GP +
Sbjct: 77 KLVSERFLTRRGRKSRSSPGDSPSAVSPNLSPSASPTSSRSNSLTVPTPPGLDVCSGPPS 136
Query: 143 PRPPQAPPPRGTGRNIS 159
P P APP +G ++S
Sbjct: 137 PL-PGAPPQKGDEADVS 152
>gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 855
Score = 30.8 bits (68), Expect = 0.51
Identities = 18/40 (45%), Positives = 18/40 (45%)
Query: 111 ATASSAAVASWRSPLLTARQERWTRDGAGPLAPRPPQAPP 150
AT S A S SP L A PLA PPQAPP
Sbjct: 359 ATPPSQATTSLGSPTLQATHSFLPSPPLSPLATPPPQAPP 398
Score = 26.6 bits (57), Expect = 9.6
Identities = 19/52 (36%), Positives = 22/52 (42%), Gaps = 3/52 (5%)
Query: 103 SPDAA---AAGATASSAAVASWRSPLLTARQERWTRDGAGPLAPRPPQAPPP 151
SP A+ + AT S A S +P L P A PPQAPPP
Sbjct: 453 SPPASPPVSPSATPPSQAPPSLAAPPLQVPPSPPASPPMSPSATPPPQAPPP 504
>gi|239755232 PREDICTED: hypothetical protein [Homo sapiens]
Length = 501
Score = 30.8 bits (68), Expect = 0.51
Identities = 29/80 (36%), Positives = 32/80 (40%), Gaps = 6/80 (7%)
Query: 74 LQRRCRARGTLGRLGSRHSRRHRGRRHRSSPDAAAAGATASSAAVASWRSPLLTARQERW 133
LQ R R +G GS RR RG+ S AAAGA +S A P
Sbjct: 392 LQPRARRQG-----GSDRHRR-RGQSGASGLGTAAAGAERTSPVGARPPPPARLVTNTAP 445
Query: 134 TRDGAGPLAPRPPQAPPPRG 153
T GAGP A PP G
Sbjct: 446 TLGGAGPRLEGRGGAAPPAG 465
>gi|239749768 PREDICTED: hypothetical protein [Homo sapiens]
Length = 591
Score = 30.8 bits (68), Expect = 0.51
Identities = 29/80 (36%), Positives = 32/80 (40%), Gaps = 6/80 (7%)
Query: 74 LQRRCRARGTLGRLGSRHSRRHRGRRHRSSPDAAAAGATASSAAVASWRSPLLTARQERW 133
LQ R R +G GS RR RG+ S AAAGA +S A P
Sbjct: 482 LQPRARRQG-----GSDRHRR-RGQSGASGLGTAAAGAERTSPVGARPPPPARLVTNTAP 535
Query: 134 TRDGAGPLAPRPPQAPPPRG 153
T GAGP A PP G
Sbjct: 536 TLGGAGPRLEGRGGAAPPAG 555
>gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo
sapiens]
Length = 816
Score = 30.8 bits (68), Expect = 0.51
Identities = 18/40 (45%), Positives = 18/40 (45%)
Query: 111 ATASSAAVASWRSPLLTARQERWTRDGAGPLAPRPPQAPP 150
AT S A S SP L A PLA PPQAPP
Sbjct: 320 ATPPSQATTSLGSPTLQATHSFLPSPPLSPLATPPPQAPP 359
Score = 26.6 bits (57), Expect = 9.6
Identities = 19/52 (36%), Positives = 22/52 (42%), Gaps = 3/52 (5%)
Query: 103 SPDAA---AAGATASSAAVASWRSPLLTARQERWTRDGAGPLAPRPPQAPPP 151
SP A+ + AT S A S +P L P A PPQAPPP
Sbjct: 414 SPPASPPVSPSATPPSQAPPSLAAPPLQVPPSPPASPPMSPSATPPPQAPPP 465
>gi|239744027 PREDICTED: hypothetical protein XP_002343007 [Homo
sapiens]
Length = 591
Score = 30.8 bits (68), Expect = 0.51
Identities = 29/80 (36%), Positives = 32/80 (40%), Gaps = 6/80 (7%)
Query: 74 LQRRCRARGTLGRLGSRHSRRHRGRRHRSSPDAAAAGATASSAAVASWRSPLLTARQERW 133
LQ R R +G GS RR RG+ S AAAGA +S A P
Sbjct: 482 LQPRARRQG-----GSDRHRR-RGQSGASGLGTAAAGAERTSPVGARPPPPARLVTNTAP 535
Query: 134 TRDGAGPLAPRPPQAPPPRG 153
T GAGP A PP G
Sbjct: 536 TLGGAGPRLEGRGGAAPPAG 555
>gi|41352718 deltex homolog 1 [Homo sapiens]
Length = 620
Score = 30.8 bits (68), Expect = 0.51
Identities = 17/52 (32%), Positives = 20/52 (38%), Gaps = 12/52 (23%)
Query: 104 PDAAAAGATASSAAVASWRSPLLTARQERWTRDGAGPLAPRPPQAPPPRGTG 155
P A A +A+ A W +P AGP P PP PPR G
Sbjct: 242 PGALAVRPSATFTGAALWAAP------------AAGPAEPAPPPGAPPRSPG 281
>gi|22538470 eomesodermin [Homo sapiens]
Length = 686
Score = 30.4 bits (67), Expect = 0.67
Identities = 20/88 (22%), Positives = 38/88 (43%)
Query: 53 IADQSCSDMLGSVALLLTEPQLQRRCRARGTLGRLGSRHSRRHRGRRHRSSPDAAAAGAT 112
++ + + G+ A +L++ + + + G R+ P AAAA A
Sbjct: 64 VSGEPAAASAGAPAAMLSDTDAGDAFASAAAVAKPGPPDGRKGSPCGEEELPSAAAAAAA 123
Query: 113 ASSAAVASWRSPLLTARQERWTRDGAGP 140
A++AA A+ R + + ER+ GP
Sbjct: 124 AAAAAAATARYSMDSLSSERYYLQSPGP 151
>gi|156416026 zinc finger protein 219 [Homo sapiens]
Length = 722
Score = 30.4 bits (67), Expect = 0.67
Identities = 21/64 (32%), Positives = 23/64 (35%), Gaps = 7/64 (10%)
Query: 91 HSRRHRGRRHRSSPDAAAAGATASSAAVASWRSPLLTARQERWTRDGAGPLAPRPPQAPP 150
H R H G R P AG + S R R R GAGP P P P
Sbjct: 516 HLRVHTGERPYKCPHCDYAGTQSGSLKYH-------LQRHHREQRSGAGPGPPPEPPPPS 568
Query: 151 PRGT 154
RG+
Sbjct: 569 QRGS 572
Score = 26.9 bits (58), Expect = 7.4
Identities = 23/65 (35%), Positives = 27/65 (41%), Gaps = 5/65 (7%)
Query: 80 ARG-TLGRLGSRHSRRHRGRRHRSSPDAAAAGATASSAAVASWRSPLLTARQERWTRDGA 138
ARG +LG L S H R G H A+AAGA A S A L+ + R
Sbjct: 441 ARGRSLGSLASLHPRPGEGPGH----SASAAGAQARSTATQEENGLLVGGTRPEGGRGAT 496
Query: 139 GPLAP 143
G P
Sbjct: 497 GKDCP 501
>gi|156415998 zinc finger protein 219 [Homo sapiens]
Length = 722
Score = 30.4 bits (67), Expect = 0.67
Identities = 21/64 (32%), Positives = 23/64 (35%), Gaps = 7/64 (10%)
Query: 91 HSRRHRGRRHRSSPDAAAAGATASSAAVASWRSPLLTARQERWTRDGAGPLAPRPPQAPP 150
H R H G R P AG + S R R R GAGP P P P
Sbjct: 516 HLRVHTGERPYKCPHCDYAGTQSGSLKYH-------LQRHHREQRSGAGPGPPPEPPPPS 568
Query: 151 PRGT 154
RG+
Sbjct: 569 QRGS 572
Score = 26.9 bits (58), Expect = 7.4
Identities = 23/65 (35%), Positives = 27/65 (41%), Gaps = 5/65 (7%)
Query: 80 ARG-TLGRLGSRHSRRHRGRRHRSSPDAAAAGATASSAAVASWRSPLLTARQERWTRDGA 138
ARG +LG L S H R G H A+AAGA A S A L+ + R
Sbjct: 441 ARGRSLGSLASLHPRPGEGPGH----SASAAGAQARSTATQEENGLLVGGTRPEGGRGAT 496
Query: 139 GPLAP 143
G P
Sbjct: 497 GKDCP 501
>gi|148276998 zinc finger protein 628 [Homo sapiens]
Length = 1055
Score = 30.4 bits (67), Expect = 0.67
Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 4/56 (7%)
Query: 100 HRSSPDAAAAGATASSAAVASWRSP----LLTARQERWTRDGAGPLAPRPPQAPPP 151
H+ + AA A TAS+A R P + A +R + + P P PP PPP
Sbjct: 218 HQRTHGAAPAPGTASAAPPPQSREPGKVFVCDAYLQRHLQPHSPPAPPAPPPPPPP 273
>gi|156415996 zinc finger protein 219 [Homo sapiens]
Length = 722
Score = 30.4 bits (67), Expect = 0.67
Identities = 21/64 (32%), Positives = 23/64 (35%), Gaps = 7/64 (10%)
Query: 91 HSRRHRGRRHRSSPDAAAAGATASSAAVASWRSPLLTARQERWTRDGAGPLAPRPPQAPP 150
H R H G R P AG + S R R R GAGP P P P
Sbjct: 516 HLRVHTGERPYKCPHCDYAGTQSGSLKYH-------LQRHHREQRSGAGPGPPPEPPPPS 568
Query: 151 PRGT 154
RG+
Sbjct: 569 QRGS 572
Score = 26.9 bits (58), Expect = 7.4
Identities = 23/65 (35%), Positives = 27/65 (41%), Gaps = 5/65 (7%)
Query: 80 ARG-TLGRLGSRHSRRHRGRRHRSSPDAAAAGATASSAAVASWRSPLLTARQERWTRDGA 138
ARG +LG L S H R G H A+AAGA A S A L+ + R
Sbjct: 441 ARGRSLGSLASLHPRPGEGPGH----SASAAGAQARSTATQEENGLLVGGTRPEGGRGAT 496
Query: 139 GPLAP 143
G P
Sbjct: 497 GKDCP 501
>gi|55769539 hypothetical protein LOC221416 [Homo sapiens]
Length = 242
Score = 30.4 bits (67), Expect = 0.67
Identities = 31/80 (38%), Positives = 37/80 (46%), Gaps = 13/80 (16%)
Query: 74 LQRRCRARGTLGRLGSRHSRRHRGRRHRSSPDAAAAGATASSAAVASWRSPLLTARQERW 133
L+ R R RG + L +R SRR RG R++ AAAA A A A + P
Sbjct: 97 LRTRGRTRGWVQTL-ARMSRRTRGPVERAA--AAAAAAAGGDAGHAPFPPPP-------- 145
Query: 134 TRDGAGPLAPRPPQAPPPRG 153
DGA APR P PRG
Sbjct: 146 AADGA--RAPRSPGQVTPRG 163
>gi|239757559 PREDICTED: hypothetical protein [Homo sapiens]
Length = 196
Score = 30.0 bits (66), Expect = 0.87
Identities = 33/116 (28%), Positives = 45/116 (38%), Gaps = 21/116 (18%)
Query: 57 SCSDMLGSVALLLTEPQLQRRCRARGTLGRLG----SRHSRRHRGRRHRSSPDAAAAGAT 112
S + + G+ + LL E R C AR + +R S R R + G
Sbjct: 71 SIATLRGAPSALLCEWDPPRPCSARAATAAVSRGPRARSSACSRLPLPRKLTEPERGGGA 130
Query: 113 ASSAAVASWRSPLLT--------------ARQERWTRD---GAGPLAPRPPQAPPP 151
S A+ +PL T +R+E +R GA PLAP P APPP
Sbjct: 131 QSQASQLIRPTPLGTRERPLAAPPGNCARSRREGPSRPAPTGAAPLAPPAPHAPPP 186
>gi|169209173 PREDICTED: hypothetical protein [Homo sapiens]
Length = 193
Score = 30.0 bits (66), Expect = 0.87
Identities = 26/71 (36%), Positives = 32/71 (45%), Gaps = 6/71 (8%)
Query: 75 QRRCRARGTLGRLGSRHSRRHRGRRHRSSP----DAAAAGATASSAAVASWRSPLLTARQ 130
+RR RAR +LG G R S R H SS AAAA A ++ A R P + R
Sbjct: 74 ERRARARLSLG--GPRGSDPGRQTGHPSSALLPRSAAAAAANPAAGGAAPARQPAASLRS 131
Query: 131 ERWTRDGAGPL 141
R +G L
Sbjct: 132 LRRASRASGAL 142
>gi|113425821 PREDICTED: hypothetical protein [Homo sapiens]
Length = 162
Score = 30.0 bits (66), Expect = 0.87
Identities = 26/71 (36%), Positives = 32/71 (45%), Gaps = 6/71 (8%)
Query: 75 QRRCRARGTLGRLGSRHSRRHRGRRHRSSP----DAAAAGATASSAAVASWRSPLLTARQ 130
+RR RAR +LG G R S R H SS AAAA A ++ A R P + R
Sbjct: 43 ERRARARLSLG--GPRGSDPGRQTGHPSSALLPRSAAAAAANPAAGGAAPARQPAASLRS 100
Query: 131 ERWTRDGAGPL 141
R +G L
Sbjct: 101 LRRASRASGAL 111
>gi|113425445 PREDICTED: hypothetical protein [Homo sapiens]
Length = 162
Score = 30.0 bits (66), Expect = 0.87
Identities = 26/71 (36%), Positives = 32/71 (45%), Gaps = 6/71 (8%)
Query: 75 QRRCRARGTLGRLGSRHSRRHRGRRHRSSP----DAAAAGATASSAAVASWRSPLLTARQ 130
+RR RAR +LG G R S R H SS AAAA A ++ A R P + R
Sbjct: 43 ERRARARLSLG--GPRGSDPGRQTGHPSSALLPRSAAAAAANPAAGGAAPARQPAASLRS 100
Query: 131 ERWTRDGAGPL 141
R +G L
Sbjct: 101 LRRASRASGAL 111
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.132 0.424
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,157,330
Number of Sequences: 37866
Number of extensions: 411926
Number of successful extensions: 3680
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 152
Number of HSP's that attempted gapping in prelim test: 3396
Number of HSP's gapped (non-prelim): 401
length of query: 159
length of database: 18,247,518
effective HSP length: 94
effective length of query: 65
effective length of database: 14,688,114
effective search space: 954727410
effective search space used: 954727410
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.