Guide to the Human Genome
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Name: LOC100288178 Sequence: fasta or formatted (159aa) NCBI GI: 239745453
Description:

PREDICTED: hypothetical protein XP_002343495

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.7         17           4
 C cysteine            2.5          4           1
 D aspartate           3.1          5           1
 E glutamate           2.5          4           1
 F phenylalanine       1.3          2           1
 G glycine             8.2         13           1
 H histidine           3.1          5           1
 I isoleucine          1.3          2           1
 K lysine              2.5          4           1
 L leucine            10.1         16           3
 M methionine          1.3          2           1
 N asparagine          1.9          3           1
 P proline             9.4         15           3
 Q glutamine           3.8          6           1
 R arginine           14.5         23           2
 S serine             10.7         17           2
 T threonine           5.0          8           1
 V valine              4.4          7           1
 W tryptophan          2.5          4           1
 Y tyrosine            1.3          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002343495 
LOC100290785          0.997   PREDICTED: hypothetical protein XP_002347677 
ZNF646                0.039   zinc finger protein 646 
ARX                   0.033   aristaless related homeobox 
LOC100287063          0.029   PREDICTED: hypothetical protein XP_002342368 
POU3F3                0.023   POU class 3 homeobox 3 
GNAS                  0.023   GNAS complex locus alex 
LOC100294413          0.023   PREDICTED: hypothetical protein 
ATXN2                 0.023   ataxin 2 
DACT3                 0.023   thymus expressed gene 3-like 
USP19                 0.020   ubiquitin thioesterase 19 
MRVI1                 0.020   JAW1-related protein isoform a 
MRVI1                 0.020   JAW1-related protein isoform b 
MRVI1                 0.020   JAW1-related protein isoform b 
FLJ22184              0.020   PREDICTED: hypothetical protein FLJ22184 
LOC729575             0.020   PREDICTED: hypothetical protein 
LOC100288110          0.020   PREDICTED: hypothetical protein 
FLJ22184              0.020   PREDICTED: hypothetical protein LOC80164 
LOC100288110          0.020   PREDICTED: hypothetical protein XP_002343007 
DTX1                  0.020   deltex homolog 1 
EOMES                 0.016   eomesodermin 
ZNF219                0.016   zinc finger protein 219 
ZNF219                0.016   zinc finger protein 219 
ZNF628                0.016   zinc finger protein 628 
ZNF219                0.016   zinc finger protein 219 
C6orf223              0.016   hypothetical protein LOC221416 
LOC100293036          0.016   PREDICTED: hypothetical protein 
LOC400456             0.016   PREDICTED: hypothetical protein 
LOC400456             0.016   PREDICTED: hypothetical protein 
LOC400456             0.016   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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