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Search of human proteins with 239750887
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239750887 PREDICTED: hypothetical protein [Homo sapiens]
(111 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239750887 PREDICTED: hypothetical protein [Homo sapiens] 231 7e-62
gi|239756362 PREDICTED: hypothetical protein [Homo sapiens] 229 4e-61
gi|239745250 PREDICTED: hypothetical protein [Homo sapiens] 228 8e-61
gi|48255900 SWI/SNF-related matrix-associated actin-dependent re... 29 0.71
gi|48255898 SWI/SNF-related matrix-associated actin-dependent re... 29 0.71
gi|239748046 PREDICTED: hypothetical protein XP_002346501 [Homo ... 28 1.6
gi|169180010 PREDICTED: hypothetical protein [Homo sapiens] 28 2.1
gi|169178954 PREDICTED: hypothetical protein [Homo sapiens] 28 2.1
gi|169176365 PREDICTED: hypothetical protein [Homo sapiens] 28 2.1
gi|212549553 interleukin enhancer binding factor 3 isoform d [Ho... 27 2.7
gi|24234750 interleukin enhancer binding factor 3 isoform a [Hom... 27 2.7
gi|32490567 relaxin 3 receptor 2 [Homo sapiens] 27 2.7
gi|163644283 proteasome (prosome, macropain) activator subunit 4... 27 2.7
gi|239757083 PREDICTED: similar to hCG1996962 [Homo sapiens] 27 3.5
gi|239753405 PREDICTED: hypothetical protein [Homo sapiens] 27 3.5
gi|239747975 PREDICTED: hypothetical protein XP_002346485 [Homo ... 27 3.5
gi|239741872 PREDICTED: hypothetical protein XP_002342329 [Homo ... 27 3.5
gi|26051240 tumor necrosis factor, alpha-induced protein 2 [Homo... 27 3.5
gi|221219020 NYD-SP11 protein [Homo sapiens] 27 4.6
gi|55953110 retinoblastoma protein-binding zinc finger protein i... 27 4.6
gi|20336260 retinoblastoma protein-binding zinc finger protein i... 27 4.6
gi|20336258 retinoblastoma protein-binding zinc finger protein i... 27 4.6
gi|118918413 MICAL C-terminal like [Homo sapiens] 27 4.6
gi|122937219 F-box protein 41 [Homo sapiens] 27 4.6
gi|33354279 hypothetical protein LOC55425 [Homo sapiens] 27 4.6
gi|109389365 glucose-6-phosphate dehydrogenase isoform a [Homo s... 26 6.0
gi|239758013 PREDICTED: hypothetical protein [Homo sapiens] 26 6.0
gi|224586884 cold shock domain protein A isoform b [Homo sapiens] 26 6.0
gi|224586882 cold shock domain protein A isoform a [Homo sapiens] 26 6.0
gi|4557679 jagged 1 precursor [Homo sapiens] 26 7.8
>gi|239750887 PREDICTED: hypothetical protein [Homo sapiens]
Length = 111
Score = 231 bits (590), Expect = 7e-62
Identities = 111/111 (100%), Positives = 111/111 (100%)
Query: 1 MAEPGCSTLTVRLGRRGSGSVRGAELRGSGRAGRVCQRPLLPVSVGIFQKAEHGGQVKPG 60
MAEPGCSTLTVRLGRRGSGSVRGAELRGSGRAGRVCQRPLLPVSVGIFQKAEHGGQVKPG
Sbjct: 1 MAEPGCSTLTVRLGRRGSGSVRGAELRGSGRAGRVCQRPLLPVSVGIFQKAEHGGQVKPG 60
Query: 61 RPAQWQQLWPEGHQWTQRPRERSRGQQETANAEAQSDQDTVLVHILGGADV 111
RPAQWQQLWPEGHQWTQRPRERSRGQQETANAEAQSDQDTVLVHILGGADV
Sbjct: 61 RPAQWQQLWPEGHQWTQRPRERSRGQQETANAEAQSDQDTVLVHILGGADV 111
>gi|239756362 PREDICTED: hypothetical protein [Homo sapiens]
Length = 111
Score = 229 bits (584), Expect = 4e-61
Identities = 110/111 (99%), Positives = 110/111 (99%)
Query: 1 MAEPGCSTLTVRLGRRGSGSVRGAELRGSGRAGRVCQRPLLPVSVGIFQKAEHGGQVKPG 60
MAEPGCSTLTVRLGRRGSGSVRGAELRGS RAGRVCQRPLLPVSVGIFQKAEHGGQVKPG
Sbjct: 1 MAEPGCSTLTVRLGRRGSGSVRGAELRGSSRAGRVCQRPLLPVSVGIFQKAEHGGQVKPG 60
Query: 61 RPAQWQQLWPEGHQWTQRPRERSRGQQETANAEAQSDQDTVLVHILGGADV 111
RPAQWQQLWPEGHQWTQRPRERSRGQQETANAEAQSDQDTVLVHILGGADV
Sbjct: 61 RPAQWQQLWPEGHQWTQRPRERSRGQQETANAEAQSDQDTVLVHILGGADV 111
>gi|239745250 PREDICTED: hypothetical protein [Homo sapiens]
Length = 134
Score = 228 bits (581), Expect = 8e-61
Identities = 109/109 (100%), Positives = 109/109 (100%)
Query: 3 EPGCSTLTVRLGRRGSGSVRGAELRGSGRAGRVCQRPLLPVSVGIFQKAEHGGQVKPGRP 62
EPGCSTLTVRLGRRGSGSVRGAELRGSGRAGRVCQRPLLPVSVGIFQKAEHGGQVKPGRP
Sbjct: 26 EPGCSTLTVRLGRRGSGSVRGAELRGSGRAGRVCQRPLLPVSVGIFQKAEHGGQVKPGRP 85
Query: 63 AQWQQLWPEGHQWTQRPRERSRGQQETANAEAQSDQDTVLVHILGGADV 111
AQWQQLWPEGHQWTQRPRERSRGQQETANAEAQSDQDTVLVHILGGADV
Sbjct: 86 AQWQQLWPEGHQWTQRPRERSRGQQETANAEAQSDQDTVLVHILGGADV 134
>gi|48255900 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a2 isoform a [Homo sapiens]
Length = 1590
Score = 29.3 bits (64), Expect = 0.71
Identities = 16/56 (28%), Positives = 26/56 (46%)
Query: 49 QKAEHGGQVKPGRPAQWQQLWPEGHQWTQRPRERSRGQQETANAEAQSDQDTVLVH 104
Q A G + PG Q QQ + Q Q+ +++ + QQ+ + Q Q LV+
Sbjct: 203 QLAVQGKRTLPGLQQQQQQQQQQQQQQQQQQQQQQQPQQQPPQPQTQQQQQPALVN 258
>gi|48255898 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a2 isoform b [Homo sapiens]
Length = 1572
Score = 29.3 bits (64), Expect = 0.71
Identities = 16/56 (28%), Positives = 26/56 (46%)
Query: 49 QKAEHGGQVKPGRPAQWQQLWPEGHQWTQRPRERSRGQQETANAEAQSDQDTVLVH 104
Q A G + PG Q QQ + Q Q+ +++ + QQ+ + Q Q LV+
Sbjct: 203 QLAVQGKRTLPGLQQQQQQQQQQQQQQQQQQQQQQQPQQQPPQPQTQQQQQPALVN 258
>gi|239748046 PREDICTED: hypothetical protein XP_002346501 [Homo
sapiens]
Length = 411
Score = 28.1 bits (61), Expect = 1.6
Identities = 28/90 (31%), Positives = 35/90 (38%), Gaps = 5/90 (5%)
Query: 16 RGSGSVRGAELRGSGRAGRVCQRPLLPVSVGIFQKAEHGGQVKPGRPAQWQQLWPEGHQW 75
RG G +RG E G G C R L VG + G + G + WQQ EG
Sbjct: 193 RGLGGLRGLECSRLGWGGGRCVRVLRASCVG--PRGPGCGHCQVGSSSLWQQ-HEEGS-- 247
Query: 76 TQRPRERSRGQQETANAEAQSDQDTVLVHI 105
Q E + + AEA+ D L I
Sbjct: 248 LQEAAEAAECSHQPVGAEARVCADHTLEDI 277
>gi|169180010 PREDICTED: hypothetical protein [Homo sapiens]
Length = 219
Score = 27.7 bits (60), Expect = 2.1
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 78 RPRERSRGQQETANAEAQSDQDTVLVHI 105
+PRE S+G Q AN D D L+++
Sbjct: 150 KPREESQGAQHRANLRVYRDADPFLINV 177
>gi|169178954 PREDICTED: hypothetical protein [Homo sapiens]
Length = 219
Score = 27.7 bits (60), Expect = 2.1
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 78 RPRERSRGQQETANAEAQSDQDTVLVHI 105
+PRE S+G Q AN D D L+++
Sbjct: 150 KPREESQGAQHRANLRVYRDADPFLINV 177
>gi|169176365 PREDICTED: hypothetical protein [Homo sapiens]
Length = 219
Score = 27.7 bits (60), Expect = 2.1
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 78 RPRERSRGQQETANAEAQSDQDTVLVHI 105
+PRE S+G Q AN D D L+++
Sbjct: 150 KPREESQGAQHRANLRVYRDADPFLINV 177
>gi|212549553 interleukin enhancer binding factor 3 isoform d [Homo
sapiens]
Length = 898
Score = 27.3 bits (59), Expect = 2.7
Identities = 19/63 (30%), Positives = 26/63 (41%), Gaps = 2/63 (3%)
Query: 17 GSGSVRGAELRGSGRAGRVCQRPLLPVSVGIFQKAEHGGQVKPGRPAQWQQLWPEGHQWT 76
G G G+ GS G P+ P G +K HGGQ KP + +Q + +
Sbjct: 707 GGGGGGGSSGYGSYYQGDNYNSPVPPKHAG--KKQPHGGQQKPSYGSGYQSHQGQQQSYN 764
Query: 77 QRP 79
Q P
Sbjct: 765 QSP 767
>gi|24234750 interleukin enhancer binding factor 3 isoform a [Homo
sapiens]
Length = 894
Score = 27.3 bits (59), Expect = 2.7
Identities = 19/63 (30%), Positives = 26/63 (41%), Gaps = 2/63 (3%)
Query: 17 GSGSVRGAELRGSGRAGRVCQRPLLPVSVGIFQKAEHGGQVKPGRPAQWQQLWPEGHQWT 76
G G G+ GS G P+ P G +K HGGQ KP + +Q + +
Sbjct: 703 GGGGGGGSSGYGSYYQGDNYNSPVPPKHAG--KKQPHGGQQKPSYGSGYQSHQGQQQSYN 760
Query: 77 QRP 79
Q P
Sbjct: 761 QSP 763
>gi|32490567 relaxin 3 receptor 2 [Homo sapiens]
Length = 374
Score = 27.3 bits (59), Expect = 2.7
Identities = 11/39 (28%), Positives = 22/39 (56%)
Query: 67 QLWPEGHQWTQRPRERSRGQQETANAEAQSDQDTVLVHI 105
+LWP+G W Q+ + G++ A+ +S T+L ++
Sbjct: 330 RLWPQGGGWVQQVALKQVGRRWVASNPRESRPSTLLTNL 368
>gi|163644283 proteasome (prosome, macropain) activator subunit 4
[Homo sapiens]
Length = 1843
Score = 27.3 bits (59), Expect = 2.7
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 60 GRPAQWQQLWPEGHQWTQR 78
GR Q Q+LWP G WT++
Sbjct: 60 GRAVQLQELWPGGLFWTRK 78
>gi|239757083 PREDICTED: similar to hCG1996962 [Homo sapiens]
Length = 192
Score = 26.9 bits (58), Expect = 3.5
Identities = 21/85 (24%), Positives = 33/85 (38%), Gaps = 11/85 (12%)
Query: 1 MAEPGCSTLTVRLGRRGSGSVRGAELRGSGRAGRVCQRPL-----------LPVSVGIFQ 49
+A P T R G G+ ++L A +RP P + G F+
Sbjct: 103 VAPPRVPPRTPRRGSLGAAVFSSSDLTFDAEAQGQVRRPRPAQAVGPSGARRPEAPGWFR 162
Query: 50 KAEHGGQVKPGRPAQWQQLWPEGHQ 74
K++ G+ G +QW Q P+ Q
Sbjct: 163 KSDRSGRAGTGAWSQWPQANPDEQQ 187
>gi|239753405 PREDICTED: hypothetical protein [Homo sapiens]
Length = 219
Score = 26.9 bits (58), Expect = 3.5
Identities = 20/71 (28%), Positives = 27/71 (38%), Gaps = 13/71 (18%)
Query: 4 PGCSTLTVRLGRRGSGSVRGAELRGSGRAGRVCQRPLLPVSVG-----------IFQKAE 52
PG T R R G + R RG GR + + PLL +G + +A+
Sbjct: 148 PGAGTAAARASRAGPRASRRG--RGRGRGLQAARPPLLAFCLGREFSSGFFSPLLIPRAQ 205
Query: 53 HGGQVKPGRPA 63
G RPA
Sbjct: 206 FGAHASTRRPA 216
>gi|239747975 PREDICTED: hypothetical protein XP_002346485 [Homo
sapiens]
Length = 219
Score = 26.9 bits (58), Expect = 3.5
Identities = 20/71 (28%), Positives = 27/71 (38%), Gaps = 13/71 (18%)
Query: 4 PGCSTLTVRLGRRGSGSVRGAELRGSGRAGRVCQRPLLPVSVG-----------IFQKAE 52
PG T R R G + R RG GR + + PLL +G + +A+
Sbjct: 148 PGAGTAAARASRAGPRASRRG--RGRGRGLQAARPPLLAFCLGREFSSGFFSPLLIPRAQ 205
Query: 53 HGGQVKPGRPA 63
G RPA
Sbjct: 206 FGAHASTRRPA 216
>gi|239741872 PREDICTED: hypothetical protein XP_002342329 [Homo
sapiens]
Length = 219
Score = 26.9 bits (58), Expect = 3.5
Identities = 20/71 (28%), Positives = 27/71 (38%), Gaps = 13/71 (18%)
Query: 4 PGCSTLTVRLGRRGSGSVRGAELRGSGRAGRVCQRPLLPVSVG-----------IFQKAE 52
PG T R R G + R RG GR + + PLL +G + +A+
Sbjct: 148 PGAGTAAARASRAGPRASRRG--RGRGRGLQAARPPLLAFCLGREFSSGFFSPLLIPRAQ 205
Query: 53 HGGQVKPGRPA 63
G RPA
Sbjct: 206 FGAHASTRRPA 216
>gi|26051240 tumor necrosis factor, alpha-induced protein 2 [Homo
sapiens]
Length = 654
Score = 26.9 bits (58), Expect = 3.5
Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 6/45 (13%)
Query: 61 RPAQWQQLWPEGHQWTQRPRERSRGQQETANAEAQSDQDTVLVHI 105
RP +W QLW G E GQ+ A AE ++V +H+
Sbjct: 182 RPRRWLQLWRRG---VAEAAEERMGQRPAAGAEV---PESVFLHL 220
>gi|221219020 NYD-SP11 protein [Homo sapiens]
Length = 2873
Score = 26.6 bits (57), Expect = 4.6
Identities = 13/55 (23%), Positives = 29/55 (52%)
Query: 45 VGIFQKAEHGGQVKPGRPAQWQQLWPEGHQWTQRPRERSRGQQETANAEAQSDQD 99
V + ++ G+ K + + Q+ E H+W + R+R+R +++ A E + Q+
Sbjct: 1544 VTLEEEVSREGEEKEQQVTEEQRHIQEEHKWARIHRKRARAEKKRAQEERKLAQE 1598
>gi|55953110 retinoblastoma protein-binding zinc finger protein
isoform c [Homo sapiens]
Length = 1481
Score = 26.6 bits (57), Expect = 4.6
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 4/44 (9%)
Query: 25 ELRGSGRAGRVCQRPLLPVSVGIFQKAEHGGQVKPGRPAQWQQL 68
E S VC + L +S G+ QKAE G+ P QW+ +
Sbjct: 607 EWTASSAFSSVCNQQPLDLSSGVKQKAEGTGKT----PVQWESV 646
>gi|20336260 retinoblastoma protein-binding zinc finger protein
isoform b [Homo sapiens]
Length = 1682
Score = 26.6 bits (57), Expect = 4.6
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 4/44 (9%)
Query: 25 ELRGSGRAGRVCQRPLLPVSVGIFQKAEHGGQVKPGRPAQWQQL 68
E S VC + L +S G+ QKAE G+ P QW+ +
Sbjct: 808 EWTASSAFSSVCNQQPLDLSSGVKQKAEGTGKT----PVQWESV 847
>gi|20336258 retinoblastoma protein-binding zinc finger protein
isoform a [Homo sapiens]
Length = 1718
Score = 26.6 bits (57), Expect = 4.6
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 4/44 (9%)
Query: 25 ELRGSGRAGRVCQRPLLPVSVGIFQKAEHGGQVKPGRPAQWQQL 68
E S VC + L +S G+ QKAE G+ P QW+ +
Sbjct: 808 EWTASSAFSSVCNQQPLDLSSGVKQKAEGTGKT----PVQWESV 847
>gi|118918413 MICAL C-terminal like [Homo sapiens]
Length = 695
Score = 26.6 bits (57), Expect = 4.6
Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Query: 29 SGRAGRVCQ--RPLL-PVSVGIFQKAEHGGQVKPGRPAQWQQ 67
+GR GRV + RPLL P + G + G Q K G PA+ Q
Sbjct: 217 NGRGGRVLKPVRPLLLPRAAGEPLPTQRGAQEKMGTPAEQAQ 258
>gi|122937219 F-box protein 41 [Homo sapiens]
Length = 936
Score = 26.6 bits (57), Expect = 4.6
Identities = 17/54 (31%), Positives = 22/54 (40%), Gaps = 3/54 (5%)
Query: 7 STLTVRLGRRGSGSVRGAELRGSGRAGRVCQRPLLPVSVGIFQKAEHGGQVKPG 60
ST + LGR G G G RG GR P +P + + + HG G
Sbjct: 413 STPSASLGRGGGGGGAGPNARGPGRMREHHVGPAVPNTYAV---SRHGSSPSTG 463
>gi|33354279 hypothetical protein LOC55425 [Homo sapiens]
Length = 340
Score = 26.6 bits (57), Expect = 4.6
Identities = 14/36 (38%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 75 WTQRPRERSRGQQETANAEAQSDQDTVLVHILGGAD 110
WT P +R R +ET A S + HIL G D
Sbjct: 223 WTDTPADRERKAKETQEARKSSSKKDE-EHILSGRD 257
>gi|109389365 glucose-6-phosphate dehydrogenase isoform a [Homo
sapiens]
Length = 545
Score = 26.2 bits (56), Expect = 6.0
Identities = 12/22 (54%), Positives = 13/22 (59%)
Query: 13 LGRRGSGSVRGAELRGSGRAGR 34
+GRRGS G LRG R GR
Sbjct: 1 MGRRGSAPGNGRTLRGCERGGR 22
>gi|239758013 PREDICTED: hypothetical protein [Homo sapiens]
Length = 819
Score = 26.2 bits (56), Expect = 6.0
Identities = 27/91 (29%), Positives = 36/91 (39%), Gaps = 7/91 (7%)
Query: 16 RGSGSVRG---AELRGSGRAGRVCQRPLLPVSVGIFQKAEHGGQVKPGRPAQWQQLWPEG 72
RG G +G A+ RG GR Q P K GG KP R G
Sbjct: 381 RGGGDKKGLREAKRRGDGRKKPRWQNPRRRAQKAPAAKPRGGGSKKPRRRGPKAAKSRGG 440
Query: 73 HQWT---QRPRER-SRGQQETANAEAQSDQD 99
+ ++PR R + +Q+ A A A+S D
Sbjct: 441 KSRSGGGKKPRRRGQKARQKAAEAGAESRGD 471
>gi|224586884 cold shock domain protein A isoform b [Homo sapiens]
Length = 303
Score = 26.2 bits (56), Expect = 6.0
Identities = 16/45 (35%), Positives = 20/45 (44%)
Query: 55 GQVKPGRPAQWQQLWPEGHQWTQRPRERSRGQQETANAEAQSDQD 99
G++K G P Q P T RPR RSRG A A + +
Sbjct: 196 GEMKDGVPEGAQLQGPVHRNPTYRPRYRSRGPPRPRPAPAVGEAE 240
>gi|224586882 cold shock domain protein A isoform a [Homo sapiens]
Length = 372
Score = 26.2 bits (56), Expect = 6.0
Identities = 16/45 (35%), Positives = 20/45 (44%)
Query: 55 GQVKPGRPAQWQQLWPEGHQWTQRPRERSRGQQETANAEAQSDQD 99
G++K G P Q P T RPR RSRG A A + +
Sbjct: 265 GEMKDGVPEGAQLQGPVHRNPTYRPRYRSRGPPRPRPAPAVGEAE 309
>gi|4557679 jagged 1 precursor [Homo sapiens]
Length = 1218
Score = 25.8 bits (55), Expect = 7.8
Identities = 11/22 (50%), Positives = 13/22 (59%), Gaps = 2/22 (9%)
Query: 47 IFQKAEHGGQVKPGRPAQWQQL 68
I +KA H G + P R QWQ L
Sbjct: 151 IIEKASHSGMINPSR--QWQTL 170
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.133 0.415
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,021,237
Number of Sequences: 37866
Number of extensions: 246156
Number of successful extensions: 903
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 877
Number of HSP's gapped (non-prelim): 48
length of query: 111
length of database: 18,247,518
effective HSP length: 81
effective length of query: 30
effective length of database: 15,180,372
effective search space: 455411160
effective search space used: 455411160
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Table of Contents |
Search text |
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.