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Search of human proteins with 239750823
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239750823 PREDICTED: hypothetical LOC645212 [Homo sapiens]
(149 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239750823 PREDICTED: hypothetical LOC645212 [Homo sapiens] 308 1e-84
gi|239745185 PREDICTED: hypothetical protein [Homo sapiens] 308 1e-84
gi|239756340 PREDICTED: hypothetical LOC645212, partial [Homo sa... 247 2e-66
gi|226509740 SR-related CTD-associated factor 1 [Homo sapiens] 34 0.052
gi|239741753 PREDICTED: hypothetical protein [Homo sapiens] 33 0.12
gi|91208420 bassoon protein [Homo sapiens] 32 0.26
gi|10181096 adenylate cyclase 6 isoform a [Homo sapiens] 31 0.34
gi|10947061 adenylate cyclase 6 isoform b [Homo sapiens] 31 0.34
gi|50409691 SRp25 nuclear protein isoform 4 [Homo sapiens] 31 0.34
gi|50409738 SRp25 nuclear protein isoform 3 [Homo sapiens] 31 0.34
gi|50409707 SRp25 nuclear protein isoform 2 [Homo sapiens] 31 0.34
gi|50409756 SRp25 nuclear protein isoform 1 [Homo sapiens] 31 0.34
gi|169167405 PREDICTED: hypothetical protein [Homo sapiens] 30 0.58
gi|146219843 Snf2-related CBP activator protein [Homo sapiens] 30 0.58
gi|169172087 PREDICTED: hypothetical protein [Homo sapiens] 30 0.75
gi|239755142 PREDICTED: hypothetical protein [Homo sapiens] 30 0.98
gi|239749631 PREDICTED: hypothetical protein [Homo sapiens] 30 0.98
gi|239749498 PREDICTED: hypothetical protein [Homo sapiens] 30 0.98
gi|239743906 PREDICTED: hypothetical protein XP_002342988 [Homo ... 30 0.98
gi|239743634 PREDICTED: hypothetical protein XP_002342919 [Homo ... 30 0.98
gi|239743072 PREDICTED: hypothetical protein [Homo sapiens] 30 0.98
gi|239508718 PREDICTED: hypothetical protein [Homo sapiens] 30 0.98
gi|39930315 neurexophilin 4 [Homo sapiens] 30 0.98
gi|45387951 transmembrane protein 108 [Homo sapiens] 30 0.98
gi|210147493 transmembrane protein 108 [Homo sapiens] 30 0.98
gi|71143119 signal-induced proliferation-associated 1 like 3 [Ho... 30 0.98
gi|119964718 desmoglein 3 preproprotein [Homo sapiens] 29 1.3
gi|7662236 TSC22 domain family, member 2 [Homo sapiens] 29 1.3
gi|106507204 hypothetical protein LOC653319 [Homo sapiens] 29 1.3
gi|239756566 PREDICTED: hypothetical protein [Homo sapiens] 29 1.7
>gi|239750823 PREDICTED: hypothetical LOC645212 [Homo sapiens]
Length = 149
Score = 308 bits (789), Expect = 1e-84
Identities = 149/149 (100%), Positives = 149/149 (100%)
Query: 1 MGPWLTVRRAEATPPQAAAATRAEQREGHRGLRSAGSGFQLPTTQTSTGVRGAGRPPPDS 60
MGPWLTVRRAEATPPQAAAATRAEQREGHRGLRSAGSGFQLPTTQTSTGVRGAGRPPPDS
Sbjct: 1 MGPWLTVRRAEATPPQAAAATRAEQREGHRGLRSAGSGFQLPTTQTSTGVRGAGRPPPDS 60
Query: 61 GPRVGNVSARKLAEWFFGWRLNLASLRRPSPANAYPASTGGCAVPLVTVITVHGRLRIPT 120
GPRVGNVSARKLAEWFFGWRLNLASLRRPSPANAYPASTGGCAVPLVTVITVHGRLRIPT
Sbjct: 61 GPRVGNVSARKLAEWFFGWRLNLASLRRPSPANAYPASTGGCAVPLVTVITVHGRLRIPT 120
Query: 121 PCSEEGSEATPACGVGGRASGTPEGVVAR 149
PCSEEGSEATPACGVGGRASGTPEGVVAR
Sbjct: 121 PCSEEGSEATPACGVGGRASGTPEGVVAR 149
>gi|239745185 PREDICTED: hypothetical protein [Homo sapiens]
Length = 149
Score = 308 bits (789), Expect = 1e-84
Identities = 149/149 (100%), Positives = 149/149 (100%)
Query: 1 MGPWLTVRRAEATPPQAAAATRAEQREGHRGLRSAGSGFQLPTTQTSTGVRGAGRPPPDS 60
MGPWLTVRRAEATPPQAAAATRAEQREGHRGLRSAGSGFQLPTTQTSTGVRGAGRPPPDS
Sbjct: 1 MGPWLTVRRAEATPPQAAAATRAEQREGHRGLRSAGSGFQLPTTQTSTGVRGAGRPPPDS 60
Query: 61 GPRVGNVSARKLAEWFFGWRLNLASLRRPSPANAYPASTGGCAVPLVTVITVHGRLRIPT 120
GPRVGNVSARKLAEWFFGWRLNLASLRRPSPANAYPASTGGCAVPLVTVITVHGRLRIPT
Sbjct: 61 GPRVGNVSARKLAEWFFGWRLNLASLRRPSPANAYPASTGGCAVPLVTVITVHGRLRIPT 120
Query: 121 PCSEEGSEATPACGVGGRASGTPEGVVAR 149
PCSEEGSEATPACGVGGRASGTPEGVVAR
Sbjct: 121 PCSEEGSEATPACGVGGRASGTPEGVVAR 149
>gi|239756340 PREDICTED: hypothetical LOC645212, partial [Homo
sapiens]
Length = 119
Score = 247 bits (631), Expect = 2e-66
Identities = 119/119 (100%), Positives = 119/119 (100%)
Query: 31 GLRSAGSGFQLPTTQTSTGVRGAGRPPPDSGPRVGNVSARKLAEWFFGWRLNLASLRRPS 90
GLRSAGSGFQLPTTQTSTGVRGAGRPPPDSGPRVGNVSARKLAEWFFGWRLNLASLRRPS
Sbjct: 1 GLRSAGSGFQLPTTQTSTGVRGAGRPPPDSGPRVGNVSARKLAEWFFGWRLNLASLRRPS 60
Query: 91 PANAYPASTGGCAVPLVTVITVHGRLRIPTPCSEEGSEATPACGVGGRASGTPEGVVAR 149
PANAYPASTGGCAVPLVTVITVHGRLRIPTPCSEEGSEATPACGVGGRASGTPEGVVAR
Sbjct: 61 PANAYPASTGGCAVPLVTVITVHGRLRIPTPCSEEGSEATPACGVGGRASGTPEGVVAR 119
>gi|226509740 SR-related CTD-associated factor 1 [Homo sapiens]
Length = 1312
Score = 33.9 bits (76), Expect = 0.052
Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 10/74 (13%)
Query: 8 RRAEATPPQAAAATRAEQREGHRGLRSAGSGFQLPTTQT-STGVRGAG---------RPP 57
RR A+PP A +++ + +RE HRG G G + ++ S G + +G PP
Sbjct: 609 RRRSASPPPATSSSSSSRRERHRGKHRDGGGSKKKKKRSRSRGEKRSGDGSEKAPAPAPP 668
Query: 58 PDSGPRVGNVSARK 71
P G+ +R+
Sbjct: 669 PSGSTSCGDRDSRR 682
>gi|239741753 PREDICTED: hypothetical protein [Homo sapiens]
Length = 274
Score = 32.7 bits (73), Expect = 0.12
Identities = 40/145 (27%), Positives = 52/145 (35%), Gaps = 26/145 (17%)
Query: 1 MGPWLTVRRAEATPPQAAAATRAEQREGHRGLRSAGSGFQLPTTQTSTGVRGAGRPPPDS 60
+G L R TPP T A G RGL A T GRP P +
Sbjct: 107 LGHGLRPRPPPGTPPPRCPRTLAP---GPRGLFPAPPPAPARTGPAGKAAADRGRPGPAA 163
Query: 61 GPRVGNVSARKLAEWFFGWRLNLASLRRPSPANAYPASTGGCAVPLVTVITVHGRLRIPT 120
G RV + + F + L L R P + L ++ +HG +R+
Sbjct: 164 GRRV------RRSPSFPPFLLAQTRLGRTGP------------LALCLLLLLHGAMRLGG 205
Query: 121 PCSEEGSEATPACGVGGRASGTPEG 145
GS ACG GRA+ T G
Sbjct: 206 -----GSREKLACGRAGRAARTGRG 225
>gi|91208420 bassoon protein [Homo sapiens]
Length = 3926
Score = 31.6 bits (70), Expect = 0.26
Identities = 21/63 (33%), Positives = 25/63 (39%), Gaps = 5/63 (7%)
Query: 12 ATPPQAAAATRAEQREGHRGLRSAGSGFQLPTTQTS-----TGVRGAGRPPPDSGPRVGN 66
AT PQ A RAEQ G +G A + P Q + GV+ RP G G
Sbjct: 3828 ATGPQPAGPPRAEQTNGSKGTAKAPQQGRAPQAQPAPGPGPAGVKAGARPGGTPGAPAGQ 3887
Query: 67 VSA 69
A
Sbjct: 3888 PGA 3890
>gi|10181096 adenylate cyclase 6 isoform a [Homo sapiens]
Length = 1168
Score = 31.2 bits (69), Expect = 0.34
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Query: 31 GLRSAGSGFQLPTTQTSTGVRGAGRPPPDSGPRVGNVSARKLAEWFFGWRLNLASLRR 88
GLR+ GF+ T+ +T G PD+ PR G R+L + F + A L R
Sbjct: 83 GLRAVALGFE--DTEVTTTAGGTAEVAPDAVPRSGRSCWRRLVQVFQSKQFRSAKLER 138
>gi|10947061 adenylate cyclase 6 isoform b [Homo sapiens]
Length = 1115
Score = 31.2 bits (69), Expect = 0.34
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Query: 31 GLRSAGSGFQLPTTQTSTGVRGAGRPPPDSGPRVGNVSARKLAEWFFGWRLNLASLRR 88
GLR+ GF+ T+ +T G PD+ PR G R+L + F + A L R
Sbjct: 83 GLRAVALGFE--DTEVTTTAGGTAEVAPDAVPRSGRSCWRRLVQVFQSKQFRSAKLER 138
>gi|50409691 SRp25 nuclear protein isoform 4 [Homo sapiens]
Length = 338
Score = 31.2 bits (69), Expect = 0.34
Identities = 20/53 (37%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
Query: 10 AEATPPQAAAATRAEQREGHRGLRSAGSGFQLPTTQTSTGVRGAGRPPPDSGP 62
A P A+A R+G G+R+ GSG LP+ S R A RP S P
Sbjct: 53 ARGPAPLLASAGGGRARDGTWGVRTKGSGAALPSRPAS---RAAPRPEASSPP 102
>gi|50409738 SRp25 nuclear protein isoform 3 [Homo sapiens]
Length = 352
Score = 31.2 bits (69), Expect = 0.34
Identities = 20/53 (37%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
Query: 10 AEATPPQAAAATRAEQREGHRGLRSAGSGFQLPTTQTSTGVRGAGRPPPDSGP 62
A P A+A R+G G+R+ GSG LP+ S R A RP S P
Sbjct: 53 ARGPAPLLASAGGGRARDGTWGVRTKGSGAALPSRPAS---RAAPRPEASSPP 102
>gi|50409707 SRp25 nuclear protein isoform 2 [Homo sapiens]
Length = 341
Score = 31.2 bits (69), Expect = 0.34
Identities = 20/53 (37%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
Query: 10 AEATPPQAAAATRAEQREGHRGLRSAGSGFQLPTTQTSTGVRGAGRPPPDSGP 62
A P A+A R+G G+R+ GSG LP+ S R A RP S P
Sbjct: 53 ARGPAPLLASAGGGRARDGTWGVRTKGSGAALPSRPAS---RAAPRPEASSPP 102
>gi|50409756 SRp25 nuclear protein isoform 1 [Homo sapiens]
Length = 360
Score = 31.2 bits (69), Expect = 0.34
Identities = 20/53 (37%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
Query: 10 AEATPPQAAAATRAEQREGHRGLRSAGSGFQLPTTQTSTGVRGAGRPPPDSGP 62
A P A+A R+G G+R+ GSG LP+ S R A RP S P
Sbjct: 53 ARGPAPLLASAGGGRARDGTWGVRTKGSGAALPSRPAS---RAAPRPEASSPP 102
>gi|169167405 PREDICTED: hypothetical protein [Homo sapiens]
Length = 141
Score = 30.4 bits (67), Expect = 0.58
Identities = 31/95 (32%), Positives = 37/95 (38%), Gaps = 6/95 (6%)
Query: 8 RRAEATPPQAAAATRAEQREGHRGLRSAGSGFQLPTTQTSTGVRGAG---RPPPDSGPRV 64
R E TP A+ A+R + RG SA G + P G R G RP S PR
Sbjct: 6 RAREETPGPASTASRTRVHQQRRG--SAPRGGESPDPGAGAGDRRGGARQRPQRLSEPRQ 63
Query: 65 GN-VSARKLAEWFFGWRLNLASLRRPSPANAYPAS 98
V A + G L SL P A PA+
Sbjct: 64 PQAVPVPGAASYRLGLPPTLTSLSSSVPGRASPAA 98
>gi|146219843 Snf2-related CBP activator protein [Homo sapiens]
Length = 3230
Score = 30.4 bits (67), Expect = 0.58
Identities = 34/136 (25%), Positives = 50/136 (36%), Gaps = 9/136 (6%)
Query: 11 EATPPQAAAATRAEQREGHRGLRSAGSGFQLPTTQTSTGVRGAGRPPPDSGPRVGNVSAR 70
+ + P A + EG RG +S GS + Q + +G + P V +++ +
Sbjct: 3058 DGSRPLTRLARLRLEAEGMRGRKSGGS-MVVAVIQDDLDLADSGPGGLELTPPVVSLTPK 3116
Query: 71 KLAEWFFGWRLNLASLRRPSPANAYPASTGGCAVPLVTVITVHGRLRIPTPCSEEGS--- 127
+ RL SL P P G V + GRL+ P+P EGS
Sbjct: 3117 LRST-----RLRPGSLVPPLETEKLPRKRAGAPVGGSPGLAKRGRLQPPSPLGPEGSVEE 3171
Query: 128 EATPACGVGGRASGTP 143
A G GTP
Sbjct: 3172 SEAEASGEEEEGDGTP 3187
>gi|169172087 PREDICTED: hypothetical protein [Homo sapiens]
Length = 278
Score = 30.0 bits (66), Expect = 0.75
Identities = 26/81 (32%), Positives = 31/81 (38%), Gaps = 7/81 (8%)
Query: 65 GNVSARKLAEWFFGWRLNLASLRRPSPANAYPASTGGCAVPLVTVITVHGRLRIPT--PC 122
G R L W G + + + RRP+PA P G CA LR T C
Sbjct: 72 GPGEGRGLRHWPRGAPVTVPAARRPAPAPRGPKQPGCCAALAGGDTNGEWILRGSTWGLC 131
Query: 123 SEEGSEATPACGVGGRASGTP 143
+P CG G RA TP
Sbjct: 132 -----PPSPGCGAGRRALATP 147
>gi|239755142 PREDICTED: hypothetical protein [Homo sapiens]
Length = 219
Score = 29.6 bits (65), Expect = 0.98
Identities = 32/97 (32%), Positives = 36/97 (37%), Gaps = 17/97 (17%)
Query: 22 RAEQREGHRGLRSAGSGFQLPTTQTSTGVRGAGR-------PPPDSGPRVGNVSARKLAE 74
R + E GLRS G L + V G GR PP S R R+ E
Sbjct: 17 RGRRGERRPGLRSEGRRKGLLAAEAGGAVLGGGRRAGRRAEPPEPSYSR----ERRETME 72
Query: 75 WFFGWRLNLASLRRPSPANAYPA-----STGGCAVPL 106
GW L SL P PA A A G C+ PL
Sbjct: 73 GKGGWSAALGSL-PPPPAAACTALKPATRRGSCSAPL 108
>gi|239749631 PREDICTED: hypothetical protein [Homo sapiens]
Length = 217
Score = 29.6 bits (65), Expect = 0.98
Identities = 32/97 (32%), Positives = 36/97 (37%), Gaps = 17/97 (17%)
Query: 22 RAEQREGHRGLRSAGSGFQLPTTQTSTGVRGAGR-------PPPDSGPRVGNVSARKLAE 74
R + E GLRS G L + V G GR PP S R R+ E
Sbjct: 17 RGRRGERRPGLRSEGRRKGLLAAEAGGAVLGGGRRAGRRAEPPEPSYSR----ERRETME 72
Query: 75 WFFGWRLNLASLRRPSPANAYPA-----STGGCAVPL 106
GW L SL P PA A A G C+ PL
Sbjct: 73 GKGGWSAALGSL-PPPPAAACTALKPATRRGSCSAPL 108
>gi|239749498 PREDICTED: hypothetical protein [Homo sapiens]
Length = 692
Score = 29.6 bits (65), Expect = 0.98
Identities = 31/102 (30%), Positives = 40/102 (39%), Gaps = 6/102 (5%)
Query: 5 LTVRRAEATPPQAAAATRAEQREGHRGLRSAGSGFQLPTTQTSTGV--RGAGRPPPDS-- 60
LT R P AAAA+ + L AG G + + RG PD+
Sbjct: 474 LTAARVPLQRPAAAAASSSAAAAAASKLGGAGPGSAEKADRHRRLLERRGQASGNPDTLR 533
Query: 61 --GPRVGNVSARKLAEWFFGWRLNLASLRRPSPANAYPASTG 100
P+ R + G+R LA+LR P PA A A TG
Sbjct: 534 QTRPKQPAPLRRAMQGGPAGYRAGLAALRTPPPAPAGNAGTG 575
>gi|239743906 PREDICTED: hypothetical protein XP_002342988 [Homo
sapiens]
Length = 217
Score = 29.6 bits (65), Expect = 0.98
Identities = 32/97 (32%), Positives = 36/97 (37%), Gaps = 17/97 (17%)
Query: 22 RAEQREGHRGLRSAGSGFQLPTTQTSTGVRGAGR-------PPPDSGPRVGNVSARKLAE 74
R + E GLRS G L + V G GR PP S R R+ E
Sbjct: 17 RGRRGERRPGLRSEGRRKGLLAAEAGGAVLGGGRRAGRRAEPPEPSYSR----ERRETME 72
Query: 75 WFFGWRLNLASLRRPSPANAYPA-----STGGCAVPL 106
GW L SL P PA A A G C+ PL
Sbjct: 73 GKGGWSAALGSL-PPPPAAACTALKPATRRGSCSAPL 108
>gi|239743634 PREDICTED: hypothetical protein XP_002342919 [Homo
sapiens]
Length = 692
Score = 29.6 bits (65), Expect = 0.98
Identities = 31/102 (30%), Positives = 40/102 (39%), Gaps = 6/102 (5%)
Query: 5 LTVRRAEATPPQAAAATRAEQREGHRGLRSAGSGFQLPTTQTSTGV--RGAGRPPPDS-- 60
LT R P AAAA+ + L AG G + + RG PD+
Sbjct: 474 LTAARVPLQRPAAAAASSSAAAAAASKLGGAGPGSAEKADRHRRLLERRGQASGNPDTLR 533
Query: 61 --GPRVGNVSARKLAEWFFGWRLNLASLRRPSPANAYPASTG 100
P+ R + G+R LA+LR P PA A A TG
Sbjct: 534 QTRPKQPAPLRRAMQGGPAGYRAGLAALRTPPPAPAGNAGTG 575
>gi|239743072 PREDICTED: hypothetical protein [Homo sapiens]
Length = 837
Score = 29.6 bits (65), Expect = 0.98
Identities = 19/72 (26%), Positives = 30/72 (41%), Gaps = 4/72 (5%)
Query: 9 RAEATPPQAAA--ATRAEQREGHRGLRSAGSGFQLPTTQTS--TGVRGAGRPPPDSGPRV 64
R A P Q A + R + R G + G ++ + + + A RP P GP V
Sbjct: 242 RGTAMPAQTPAGPSVRRDSRAARHGEKRVDEGAWTRASRATWTSNINAAQRPSPSPGPMV 301
Query: 65 GNVSARKLAEWF 76
G+ +A + F
Sbjct: 302 GHCNAHRRVSHF 313
>gi|239508718 PREDICTED: hypothetical protein [Homo sapiens]
Length = 837
Score = 29.6 bits (65), Expect = 0.98
Identities = 19/72 (26%), Positives = 30/72 (41%), Gaps = 4/72 (5%)
Query: 9 RAEATPPQAAA--ATRAEQREGHRGLRSAGSGFQLPTTQTS--TGVRGAGRPPPDSGPRV 64
R A P Q A + R + R G + G ++ + + + A RP P GP V
Sbjct: 242 RGTAMPAQTPAGPSVRRDSRAARHGEKRVDEGAWTRASRATWTSNINAAQRPSPSPGPMV 301
Query: 65 GNVSARKLAEWF 76
G+ +A + F
Sbjct: 302 GHCNAHRRVSHF 313
>gi|39930315 neurexophilin 4 [Homo sapiens]
Length = 308
Score = 29.6 bits (65), Expect = 0.98
Identities = 28/97 (28%), Positives = 36/97 (37%), Gaps = 22/97 (22%)
Query: 2 GPWLTVRRAEATPPQAAAATRAEQREGHRGLRSAGSGFQLPTTQTSTGVRGAGRPPPDSG 61
GPWL + A P++ R + GLR A +G G G P P S
Sbjct: 13 GPWLLRKAVSAQIPESG-------RPQYLGLRPAAAG---------AGAPGQQLPEPRSS 56
Query: 62 PRVGNVSARKLAEWFFGWRLN-LASLRRPSPANAYPA 97
+G A W + W N +L R A A PA
Sbjct: 57 DGLGVGRA-----WSWAWPTNHTGALARAGAAGALPA 88
>gi|45387951 transmembrane protein 108 [Homo sapiens]
Length = 575
Score = 29.6 bits (65), Expect = 0.98
Identities = 18/56 (32%), Positives = 29/56 (51%)
Query: 89 PSPANAYPASTGGCAVPLVTVITVHGRLRIPTPCSEEGSEATPACGVGGRASGTPE 144
PS ++++ T G + PL T V PTP + + S + P+ G+ AS TP+
Sbjct: 329 PSHSDSWLTVTPGTSRPLSTSSGVFTAATGPTPAAFDTSVSAPSQGIPQGASTTPQ 384
>gi|210147493 transmembrane protein 108 [Homo sapiens]
Length = 575
Score = 29.6 bits (65), Expect = 0.98
Identities = 18/56 (32%), Positives = 29/56 (51%)
Query: 89 PSPANAYPASTGGCAVPLVTVITVHGRLRIPTPCSEEGSEATPACGVGGRASGTPE 144
PS ++++ T G + PL T V PTP + + S + P+ G+ AS TP+
Sbjct: 329 PSHSDSWLTVTPGTSRPLSTSSGVFTAATGPTPAAFDTSVSAPSQGIPQGASTTPQ 384
>gi|71143119 signal-induced proliferation-associated 1 like 3 [Homo
sapiens]
Length = 1781
Score = 29.6 bits (65), Expect = 0.98
Identities = 25/63 (39%), Positives = 30/63 (47%), Gaps = 16/63 (25%)
Query: 8 RRAEATPPQAAAATRAEQREGHRG-LRSAGSGFQLPTTQTSTGVRGAGRPPP----DSGP 62
RR E +P A A Q +G+R L S+GS T TG+ G R PP D G
Sbjct: 1359 RRREVSPAPAVAG----QSKGYRPKLYSSGSS-------TPTGLAGGSRDPPRQPSDMGS 1407
Query: 63 RVG 65
RVG
Sbjct: 1408 RVG 1410
>gi|119964718 desmoglein 3 preproprotein [Homo sapiens]
Length = 999
Score = 29.3 bits (64), Expect = 1.3
Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 95 YPASTGGCAVPLVTVITVHGRLRIPTPCSEEGSEAT 130
+P +TG A+ V VI VHG LRI T + E T
Sbjct: 5 FPRTTGALAI-FVVVILVHGELRIETKGQYDEEEMT 39
>gi|7662236 TSC22 domain family, member 2 [Homo sapiens]
Length = 780
Score = 29.3 bits (64), Expect = 1.3
Identities = 33/115 (28%), Positives = 47/115 (40%), Gaps = 29/115 (25%)
Query: 12 ATPPQAA-AATRAEQREGHRGLRSAGSGFQLPTTQTSTGVRGAGRPPPDSGPRVGNVSAR 70
AT PQ AA + Q +G AG G Q T + A PP GP VG +A+
Sbjct: 299 ATGPQPMMAAAQPSQPQG------AGPGGQTLPPTNVTLAQPAMSLPPQPGPAVGAPAAQ 352
Query: 71 KLAEWFFG--------------------WRLNLASLRRPSPANAYPASTGGCAVP 105
+ ++ + + ++A L+ PSPA P+STG A P
Sbjct: 353 QPQQFAYPQPQIPPGHLLPVQPSGQSEYLQQHVAGLQPPSPAQ--PSSTGAAASP 405
>gi|106507204 hypothetical protein LOC653319 [Homo sapiens]
Length = 471
Score = 29.3 bits (64), Expect = 1.3
Identities = 30/84 (35%), Positives = 38/84 (45%), Gaps = 19/84 (22%)
Query: 3 PW---LTVRRAEATPPQAAAATRAEQRE------GHRG-LRSAGSGFQLPTTQTSTGVRG 52
PW L + A A PP A + EQ+ GHRG +R + S + + STG RG
Sbjct: 40 PWSQSLALPLALAVPP--ALQPQPEQQPFSQMLLGHRGHMRRSESTYSV----NSTGRRG 93
Query: 53 AG---RPPPDSGPRVGNVSARKLA 73
G RPPP G G + R A
Sbjct: 94 RGTLGRPPPGRGRNPGGGTLRPAA 117
>gi|239756566 PREDICTED: hypothetical protein [Homo sapiens]
Length = 214
Score = 28.9 bits (63), Expect = 1.7
Identities = 22/58 (37%), Positives = 25/58 (43%), Gaps = 4/58 (6%)
Query: 88 RPSPANAYPASTGGCAVPLVTVITV---HGRLRIPTPCSEEGSEATPAC-GVGGRASG 141
RPSP A+ GG P V R R+P G + A GVGGRASG
Sbjct: 116 RPSPCQAHDCERGGGGRPSHRAAAVDQGRPRPRVPRGQPLPGLHPSAAAPGVGGRASG 173
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.132 0.414
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,346,181
Number of Sequences: 37866
Number of extensions: 381983
Number of successful extensions: 1653
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 73
Number of HSP's that attempted gapping in prelim test: 1615
Number of HSP's gapped (non-prelim): 107
length of query: 149
length of database: 18,247,518
effective HSP length: 93
effective length of query: 56
effective length of database: 14,725,980
effective search space: 824654880
effective search space used: 824654880
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.