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Search of human proteins with 239750731
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239750731 PREDICTED: hypothetical protein XP_002347518,
partial [Homo sapiens]
(214 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239750731 PREDICTED: hypothetical protein XP_002347518, parti... 442 e-124
gi|239752604 PREDICTED: similar to immunoglobulin lambda-like po... 138 4e-33
gi|13399298 immunoglobulin lambda-like polypeptide 1 isoform a p... 54 8e-08
gi|239752152 PREDICTED: hypothetical protein XP_002348153 [Homo ... 53 2e-07
gi|61966693 immunoglobulin lambda-like polypeptide 3 [Homo sapiens] 50 2e-06
gi|132814489 low affinity immunoglobulin gamma Fc region recepto... 39 0.003
gi|50726979 Fc fragment of IgG, low affinity IIIa, receptor (CD1... 39 0.004
gi|4757826 beta-2-microglobulin precursor [Homo sapiens] 38 0.006
gi|189083840 Fc fragment of IgG, low affinity IIIa, receptor (CD... 38 0.006
gi|189083838 Fc fragment of IgG, low affinity IIIa, receptor (CD... 38 0.006
gi|239740861 PREDICTED: similar to major histocompatibility comp... 38 0.006
gi|239513953 PREDICTED: similar to major histocompatibility comp... 38 0.006
gi|169217612 PREDICTED: similar to major histocompatibility comp... 38 0.007
gi|239740747 PREDICTED: similar to major histocompatibility comp... 38 0.007
gi|239740697 PREDICTED: similar to major histocompatibility comp... 38 0.007
gi|11095447 major histocompatibility complex, class II, DQ alpha... 37 0.010
gi|113430811 PREDICTED: similar to major histocompatibility comp... 37 0.010
gi|239740798 PREDICTED: similar to MHC class II antigen [Homo sa... 37 0.010
gi|4504399 major histocompatibility complex, class II, DM beta p... 37 0.010
gi|239740916 PREDICTED: similar to MHC HLA-DQ alpha [Homo sapiens] 37 0.016
gi|189083836 Fc fragment of IgG, low affinity IIIa, receptor (CD... 36 0.021
gi|18426975 major histocompatibility complex, class II, DQ alpha... 36 0.021
gi|189083842 Fc fragment of IgG, low affinity IIIa, receptor (CD... 36 0.028
gi|239758047 PREDICTED: similar to hCG2039165 [Homo sapiens] 36 0.028
gi|94538339 signal-regulatory protein gamma isoform 3 precursor ... 36 0.028
gi|94538335 signal-regulatory protein gamma isoform 1 precursor ... 36 0.028
gi|18765715 major histocompatibility complex, class II, DM alpha... 35 0.062
gi|50511926 Fc fragment of IgG, low affinity IIb, receptor isofo... 34 0.11
gi|50511930 Fc fragment of IgG, low affinity IIb, receptor isofo... 34 0.11
gi|50511928 Fc fragment of IgG, low affinity IIb, receptor isofo... 33 0.18
>gi|239750731 PREDICTED: hypothetical protein XP_002347518, partial
[Homo sapiens]
Length = 214
Score = 442 bits (1137), Expect = e-124
Identities = 214/214 (100%), Positives = 214/214 (100%)
Query: 1 RGVSAYLSRPSPFDLFIRKSPTITCLVVDLAPSKWTVNLTWSRASGKPVNHSTRKEEKQR 60
RGVSAYLSRPSPFDLFIRKSPTITCLVVDLAPSKWTVNLTWSRASGKPVNHSTRKEEKQR
Sbjct: 1 RGVSAYLSRPSPFDLFIRKSPTITCLVVDLAPSKWTVNLTWSRASGKPVNHSTRKEEKQR 60
Query: 61 NGTLTVTSTLPVGTRDWIEGETYQCRVTHPHLPRALVRSTTKTSGPRAAPEVYAFATPEW 120
NGTLTVTSTLPVGTRDWIEGETYQCRVTHPHLPRALVRSTTKTSGPRAAPEVYAFATPEW
Sbjct: 61 NGTLTVTSTLPVGTRDWIEGETYQCRVTHPHLPRALVRSTTKTSGPRAAPEVYAFATPEW 120
Query: 121 LGSRDKRTLTCLIQNFMPEDISVQWLHNEVQLPDAQHSTTQPRKTKGSGFFIFSRLEVTR 180
LGSRDKRTLTCLIQNFMPEDISVQWLHNEVQLPDAQHSTTQPRKTKGSGFFIFSRLEVTR
Sbjct: 121 LGSRDKRTLTCLIQNFMPEDISVQWLHNEVQLPDAQHSTTQPRKTKGSGFFIFSRLEVTR 180
Query: 181 AEWEQKDEFICRAVHEAASPSQTVQRAVSVNPGK 214
AEWEQKDEFICRAVHEAASPSQTVQRAVSVNPGK
Sbjct: 181 AEWEQKDEFICRAVHEAASPSQTVQRAVSVNPGK 214
>gi|239752604 PREDICTED: similar to immunoglobulin lambda-like
polypeptide 1 [Homo sapiens]
Length = 490
Score = 138 bits (347), Expect = 4e-33
Identities = 73/214 (34%), Positives = 119/214 (55%), Gaps = 4/214 (1%)
Query: 2 GVSAYLSRPSPFD-LFIRKSPTITCLVVDLAPSKWTVNLTWSRASGKPVNHSTRKEEKQR 60
G S +L P P D L I ++P +TC+VVD++ V W + N T+ E+Q
Sbjct: 280 GPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVQFNWYVDGMEVHNAKTKPREEQF 339
Query: 61 NGTLTVTSTLPVGTRDWIEGETYQCRVTHPHLPRALVRSTTKTSGPRAAPEVYAFATPEW 120
N T V S L V +DW+ G+ Y+C+V++ LP + ++ +KT G P+VY
Sbjct: 340 NSTFRVVSVLTVVHQDWLNGKEYKCKVSNKGLPAPIEKTISKTKGQPREPQVYTLPPSRE 399
Query: 121 LGSRDKRTLTCLIQNFMPEDISVQWLHNEVQLPDAQHSTTQPRKTKGSGFFIFSRLEVTR 180
++++ +LTCL++ F P DI+V+W N P+ + TT P FF++S+L V +
Sbjct: 400 EMTKNQVSLTCLVKGFYPSDIAVEWESN--GQPENNYKTTPPMLDSDGSFFLYSKLTVDK 457
Query: 181 AEWEQKDEFICRAVHEAASPSQTVQRAVSVNPGK 214
+ W+Q + F C +HEA T Q+++S++PGK
Sbjct: 458 SRWQQGNVFSCSVMHEALHNHYT-QKSLSLSPGK 490
Score = 37.4 bits (85), Expect = 0.010
Identities = 41/186 (22%), Positives = 65/186 (34%), Gaps = 18/186 (9%)
Query: 31 APSKWTVNLTWSRASGKPVN----HSTRKEEKQRNGTLTVTSTLPVGTRDWIEGETYQCR 86
AP + T++ W R K T + R+ TL S WI+
Sbjct: 95 APGQSTLSWLWGREWAKVRQVAPARCTPNAREPRHWTLPGPS--------WIDKNRGASA 146
Query: 87 VTHPHLPRALVRSTTKTSGPRAAPEVYAFATPEWLGSRDKRTLTCLIQNFMPEDISVQWL 146
P TT + P V+ A S L CL++++ PE ++V W
Sbjct: 147 PWAQLCPTPRSHGTTSLAASTKGPSVFPLAPCSRSTSESTAALGCLVKDYFPEPVTVSW- 205
Query: 147 HNEVQLPDAQHSTTQPRKTKGSGFFIFSRLEVTRAEWEQKDEFICRAVHEAASP--SQTV 204
N L H T P + SG + S + + + C H+ ++ +TV
Sbjct: 206 -NSGALTSGVH--TFPAVLQSSGLYSLSSVVTVTSSNFGTQTYTCNVDHKPSNTKVDKTV 262
Query: 205 QRAVSV 210
+R V
Sbjct: 263 ERKCCV 268
>gi|13399298 immunoglobulin lambda-like polypeptide 1 isoform a
precursor [Homo sapiens]
Length = 213
Score = 54.3 bits (129), Expect = 8e-08
Identities = 41/157 (26%), Positives = 65/157 (41%), Gaps = 5/157 (3%)
Query: 52 STRKEEKQRNGTLTVTSTLPVGTRDWIEG-ETYQCRVTHPHLPRALVRSTTKTSGPRAAP 110
S+R + R G + G R W G ++ VTH T S P+A P
Sbjct: 58 SSRSSLRSRWGRFLLQRGSWTGPRCWPRGFQSKHNSVTHVF---GSGTQLTVLSQPKATP 114
Query: 111 EVYAFATPEWLGSRDKRTLTCLIQNFMPEDISVQWLHNEVQLPDAQHSTTQPRKTKGSGF 170
V F +K TL CL+ +F P ++V W + + TT P K + +
Sbjct: 115 SVTLFPPSSEELQANKATLVCLMNDFYPGILTVTWKADGTPITQGVEMTT-PSKQSNNKY 173
Query: 171 FIFSRLEVTRAEWEQKDEFICRAVHEAASPSQTVQRA 207
S L +T +W + + C+ +HE ++ +TV A
Sbjct: 174 AASSYLSLTPEQWRSRRSYSCQVMHEGSTVEKTVAPA 210
>gi|239752152 PREDICTED: hypothetical protein XP_002348153 [Homo
sapiens]
Length = 264
Score = 53.1 bits (126), Expect = 2e-07
Identities = 30/99 (30%), Positives = 47/99 (47%), Gaps = 1/99 (1%)
Query: 106 PRAAPEVYAFATPEWLGSRDKRTLTCLIQNFMPEDISVQWLHNEVQLPDAQHSTTQPRKT 165
P+AAP V F +K TL CLI +F P ++V W + + A TT P K
Sbjct: 161 PKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPV-KAGVETTTPSKQ 219
Query: 166 KGSGFFIFSRLEVTRAEWEQKDEFICRAVHEAASPSQTV 204
+ + S L +T +W+ + C+ HE ++ +TV
Sbjct: 220 SNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTV 258
Score = 39.3 bits (90), Expect = 0.003
Identities = 29/88 (32%), Positives = 38/88 (43%), Gaps = 6/88 (6%)
Query: 4 SAYLSRPSPFDLFIRKSPTITCLVVDLAPSKWTVNLTWSRASGKPVNHS--TRKEEKQRN 61
S L PS +L K+ T+ CL+ D P TV W +A PV T KQ N
Sbjct: 166 SVTLFPPSSEELQANKA-TLVCLISDFYPGAVTV--AW-KADSSPVKAGVETTTPSKQSN 221
Query: 62 GTLTVTSTLPVGTRDWIEGETYQCRVTH 89
+S L + W +Y C+VTH
Sbjct: 222 NKYAASSYLSLTPEQWKSHRSYSCQVTH 249
>gi|61966693 immunoglobulin lambda-like polypeptide 3 [Homo sapiens]
Length = 224
Score = 49.7 bits (117), Expect = 2e-06
Identities = 28/102 (27%), Positives = 46/102 (45%), Gaps = 1/102 (0%)
Query: 106 PRAAPEVYAFATPEWLGSRDKRTLTCLIQNFMPEDISVQWLHNEVQLPDAQHSTTQPRKT 165
P+A P V F +K TL CL+ +F ++V W + + TT P K
Sbjct: 121 PKATPSVTLFLPSSEELQANKATLVCLMNDFYLGILTVTWKADGTPITQGVEMTT-PSKQ 179
Query: 166 KGSGFFIFSRLEVTRAEWEQKDEFICRAVHEAASPSQTVQRA 207
S + S L +T +W + + C+ +HE ++ +TV A
Sbjct: 180 SNSKYMASSYLSLTPEQWRSRRSYSCQVMHEGSTAEKTVAPA 221
Score = 33.9 bits (76), Expect = 0.11
Identities = 27/88 (30%), Positives = 37/88 (42%), Gaps = 6/88 (6%)
Query: 4 SAYLSRPSPFDLFIRKSPTITCLVVDLAPSKWTVNLTWSRASGKPVNHSTRKE--EKQRN 61
S L PS +L K+ T+ CL+ D TV TW +A G P+ KQ N
Sbjct: 126 SVTLFLPSSEELQANKA-TLVCLMNDFYLGILTV--TW-KADGTPITQGVEMTTPSKQSN 181
Query: 62 GTLTVTSTLPVGTRDWIEGETYQCRVTH 89
+S L + W +Y C+V H
Sbjct: 182 SKYMASSYLSLTPEQWRSRRSYSCQVMH 209
>gi|132814489 low affinity immunoglobulin gamma Fc region receptor
III-B precursor [Homo sapiens]
Length = 233
Score = 38.9 bits (89), Expect = 0.003
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Query: 92 LPRALVRSTTKTSGPRAAPEVYAFATPEWLGSRDKRTLTCLIQN-FMPEDISVQWLHNE 149
LP AL+ + P+ F P+W +K ++T Q + PED S QW HNE
Sbjct: 6 LPTALLLLVSAGMRTEDLPKAVVFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNE 64
>gi|50726979 Fc fragment of IgG, low affinity IIIa, receptor (CD16a)
isoform a precursor [Homo sapiens]
Length = 290
Score = 38.5 bits (88), Expect = 0.004
Identities = 25/82 (30%), Positives = 37/82 (45%), Gaps = 2/82 (2%)
Query: 70 LPVGTRDWIEGETYQCRVTHPHL-PRALVRSTTKTSGPRAAPEVYAFATPEWLGSRDKRT 128
+P+G R + QC + L P AL+ + P+ F P+W +K +
Sbjct: 19 VPLGLRISLVTCPLQCGIMWQLLLPTALLLLVSAGMRTEDLPKAVVFLEPQWYRVLEKDS 78
Query: 129 LTCLIQN-FMPEDISVQWLHNE 149
+T Q + PED S QW HNE
Sbjct: 79 VTLKCQGAYSPEDNSTQWFHNE 100
>gi|4757826 beta-2-microglobulin precursor [Homo sapiens]
Length = 119
Score = 38.1 bits (87), Expect = 0.006
Identities = 24/77 (31%), Positives = 34/77 (44%), Gaps = 5/77 (6%)
Query: 129 LTCLIQNFMPEDISVQWLHNEVQLPDAQHSTTQPRKTKGSGFFIFSRLEVTRAEWEQKDE 188
L C + F P DI V L N ++ +HS +K F++ E T E KDE
Sbjct: 43 LNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLS--FSKDWSFYLLYYTEFTPTE---KDE 97
Query: 189 FICRAVHEAASPSQTVQ 205
+ CR H S + V+
Sbjct: 98 YACRVNHVTLSQPKIVK 114
>gi|189083840 Fc fragment of IgG, low affinity IIIa, receptor
(CD16a) isoform c precursor [Homo sapiens]
Length = 254
Score = 38.1 bits (87), Expect = 0.006
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Query: 92 LPRALVRSTTKTSGPRAAPEVYAFATPEWLGSRDKRTLTCLIQN-FMPEDISVQWLHNE 149
LP AL+ + P+ F P+W +K ++T Q + PED S QW HNE
Sbjct: 6 LPTALLLLVSAGMRTEDLPKAVVFLEPQWYRVLEKDSVTLKCQGAYSPEDNSTQWFHNE 64
>gi|189083838 Fc fragment of IgG, low affinity IIIa, receptor
(CD16a) isoform c precursor [Homo sapiens]
Length = 254
Score = 38.1 bits (87), Expect = 0.006
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Query: 92 LPRALVRSTTKTSGPRAAPEVYAFATPEWLGSRDKRTLTCLIQN-FMPEDISVQWLHNE 149
LP AL+ + P+ F P+W +K ++T Q + PED S QW HNE
Sbjct: 6 LPTALLLLVSAGMRTEDLPKAVVFLEPQWYRVLEKDSVTLKCQGAYSPEDNSTQWFHNE 64
>gi|239740861 PREDICTED: similar to major histocompatibility
complex, class II, DQ alpha 1 [Homo sapiens]
Length = 254
Score = 38.1 bits (87), Expect = 0.006
Identities = 29/106 (27%), Positives = 48/106 (45%), Gaps = 7/106 (6%)
Query: 91 HLPRALVRSTTKTSGPRAAPEVYAFA-TPEWLGSRDKRTLTCLIQNFMPEDISVQWLHNE 149
H +L++ + T+ PEV F+ +P LG + L CL+ N P +++ WL N
Sbjct: 93 HNLNSLIKRSNSTAATNEVPEVTVFSKSPVTLGQPN--ILICLVDNIFPPVVNITWLSNG 150
Query: 150 VQLPDAQHSTTQPRKTKGSGFFIFSRLEVTRAEWEQKDEFICRAVH 195
+ + T+ K+ S FF S L + + E D C+ H
Sbjct: 151 HSVTEGVSETSFLSKSDHS-FFKISYLTLLPSAEESYD---CKVEH 192
>gi|239513953 PREDICTED: similar to major histocompatibility
complex, class II, DQ alpha 1 [Homo sapiens]
Length = 254
Score = 38.1 bits (87), Expect = 0.006
Identities = 29/106 (27%), Positives = 48/106 (45%), Gaps = 7/106 (6%)
Query: 91 HLPRALVRSTTKTSGPRAAPEVYAFA-TPEWLGSRDKRTLTCLIQNFMPEDISVQWLHNE 149
H +L++ + T+ PEV F+ +P LG + L CL+ N P +++ WL N
Sbjct: 93 HNLNSLIKRSNSTAATNEVPEVTVFSKSPVTLGQPN--ILICLVDNIFPPVVNITWLSNG 150
Query: 150 VQLPDAQHSTTQPRKTKGSGFFIFSRLEVTRAEWEQKDEFICRAVH 195
+ + T+ K+ S FF S L + + E D C+ H
Sbjct: 151 HSVTEGVSETSFLSKSDHS-FFKISYLTLLPSAEESYD---CKVEH 192
>gi|169217612 PREDICTED: similar to major histocompatibility
complex, class II, DQ alpha 1 isoform 1 [Homo sapiens]
Length = 254
Score = 37.7 bits (86), Expect = 0.007
Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 3/83 (3%)
Query: 91 HLPRALVRSTTKTSGPRAAPEVYAFA-TPEWLGSRDKRTLTCLIQNFMPEDISVQWLHNE 149
H L++ + T+ PEV F+ +P LG + TL CL+ N P +++ WL N
Sbjct: 93 HNLNILIKRSNSTAATNEVPEVTVFSKSPVTLGQPN--TLICLVDNIFPPVVNITWLSNG 150
Query: 150 VQLPDAQHSTTQPRKTKGSGFFI 172
+ + T+ K+ S F I
Sbjct: 151 HSVTEGVSETSFLSKSDHSFFKI 173
>gi|239740747 PREDICTED: similar to major histocompatibility
complex, class II, DQ alpha 1 [Homo sapiens]
Length = 254
Score = 37.7 bits (86), Expect = 0.007
Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 3/83 (3%)
Query: 91 HLPRALVRSTTKTSGPRAAPEVYAFA-TPEWLGSRDKRTLTCLIQNFMPEDISVQWLHNE 149
H L++ + T+ PEV F+ +P LG + TL CL+ N P +++ WL N
Sbjct: 93 HNLNILIKRSNSTAATNEVPEVTVFSKSPVTLGQPN--TLICLVDNIFPPVVNITWLSNG 150
Query: 150 VQLPDAQHSTTQPRKTKGSGFFI 172
+ + T+ K+ S F I
Sbjct: 151 HSVTEGVSETSFLSKSDHSFFKI 173
>gi|239740697 PREDICTED: similar to major histocompatibility
complex, class II, DQ alpha 1 [Homo sapiens]
Length = 254
Score = 37.7 bits (86), Expect = 0.007
Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 3/83 (3%)
Query: 91 HLPRALVRSTTKTSGPRAAPEVYAFA-TPEWLGSRDKRTLTCLIQNFMPEDISVQWLHNE 149
H L++ + T+ PEV F+ +P LG + TL CL+ N P +++ WL N
Sbjct: 93 HNLNILIKRSNSTAATNEVPEVTVFSKSPVTLGQPN--TLICLVDNIFPPVVNITWLSNG 150
Query: 150 VQLPDAQHSTTQPRKTKGSGFFI 172
+ + T+ K+ S F I
Sbjct: 151 HSVTEGVSETSFLSKSDHSFFKI 173
>gi|11095447 major histocompatibility complex, class II, DQ alpha 2
[Homo sapiens]
Length = 255
Score = 37.4 bits (85), Expect = 0.010
Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 3/83 (3%)
Query: 91 HLPRALVRSTTKTSGPRAAPEVYAFAT-PEWLGSRDKRTLTCLIQNFMPEDISVQWLHNE 149
H ++R + T+ PEV F+ P LG + TL CL+ N P +++ WL N
Sbjct: 94 HTLEFMMRQSNSTAATNEVPEVTVFSKFPVTLGQPN--TLICLVDNIFPPVVNITWLSNG 151
Query: 150 VQLPDAQHSTTQPRKTKGSGFFI 172
+ + T+ K+ S F I
Sbjct: 152 HSVTEGVSETSFLSKSDHSFFKI 174
>gi|113430811 PREDICTED: similar to major histocompatibility
complex, class II, DQ alpha 1 [Homo sapiens]
Length = 255
Score = 37.4 bits (85), Expect = 0.010
Identities = 29/106 (27%), Positives = 48/106 (45%), Gaps = 7/106 (6%)
Query: 91 HLPRALVRSTTKTSGPRAAPEVYAFA-TPEWLGSRDKRTLTCLIQNFMPEDISVQWLHNE 149
H +++ + T+ PEV F+ +P LG + TL CL+ N P +++ WL N
Sbjct: 94 HNLNIVIKRSNSTAATNEVPEVTVFSKSPVTLGQPN--TLICLVDNIFPPVVNITWLSNG 151
Query: 150 VQLPDAQHSTTQPRKTKGSGFFIFSRLEVTRAEWEQKDEFICRAVH 195
+ + T+ K+ S FF S L ++ E D C+ H
Sbjct: 152 HSVTEGVSETSFLSKSDHS-FFKISYLTFLPSDDEIYD---CKVEH 193
>gi|239740798 PREDICTED: similar to MHC class II antigen [Homo
sapiens]
Length = 255
Score = 37.4 bits (85), Expect = 0.010
Identities = 29/106 (27%), Positives = 48/106 (45%), Gaps = 7/106 (6%)
Query: 91 HLPRALVRSTTKTSGPRAAPEVYAFA-TPEWLGSRDKRTLTCLIQNFMPEDISVQWLHNE 149
H +++ + T+ PEV F+ +P LG + TL CL+ N P +++ WL N
Sbjct: 94 HNLNIVIKRSNSTAATNEVPEVTVFSKSPVTLGQPN--TLICLVDNIFPPVVNITWLSNG 151
Query: 150 VQLPDAQHSTTQPRKTKGSGFFIFSRLEVTRAEWEQKDEFICRAVH 195
+ + T+ K+ S FF S L ++ E D C+ H
Sbjct: 152 HSVTEGVSETSFLSKSDHS-FFKISYLTFLPSDDEIYD---CKVEH 193
>gi|4504399 major histocompatibility complex, class II, DM beta
precursor [Homo sapiens]
Length = 263
Score = 37.4 bits (85), Expect = 0.010
Identities = 33/122 (27%), Positives = 51/122 (41%), Gaps = 5/122 (4%)
Query: 1 RGVSAYLSRPSPFDLFIRKSPTITCLVVDLAPSKWTVNLTWSRASGKPVNHSTRKEEKQR 60
R S +++ +PF+ R+ + C V P++ V +TW + + HS+ + Q
Sbjct: 113 RPPSVQVAKTTPFNT--REPVMLACYVWGFYPAE--VTITWRKNGKLVMPHSSAHKTAQP 168
Query: 61 NGTLTVTSTLPVGTRDWIEGETYQCRVTHPHLPRALVRSTTKTSGPRAAPEVYAFATPEW 120
NG T TL G+TY C V H P ++R T P +V A
Sbjct: 169 NGDWTY-QTLSHLALTPSYGDTYTCVVEHIGAPEPILRDWTPGLSPMQTLKVSVSAVTLG 227
Query: 121 LG 122
LG
Sbjct: 228 LG 229
Score = 30.0 bits (66), Expect = 1.5
Identities = 27/117 (23%), Positives = 45/117 (38%), Gaps = 19/117 (16%)
Query: 107 RAAPEVYAFATPEWLGSRDKRTLTCLIQNFMPEDISVQWLHN-EVQLP-DAQHSTTQPRK 164
R P A +R+ L C + F P ++++ W N ++ +P + H T QP
Sbjct: 111 RTRPPSVQVAKTTPFNTREPVMLACYVWGFYPAEVTITWRKNGKLVMPHSSAHKTAQP-- 168
Query: 165 TKGSGFFIFSRLEVTRAEWEQKDEFICRAVHEAA------------SPSQTVQRAVS 209
+G + + L D + C H A SP QT++ +VS
Sbjct: 169 ---NGDWTYQTLSHLALTPSYGDTYTCVVEHIGAPEPILRDWTPGLSPMQTLKVSVS 222
>gi|239740916 PREDICTED: similar to MHC HLA-DQ alpha [Homo sapiens]
Length = 255
Score = 36.6 bits (83), Expect = 0.016
Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 3/83 (3%)
Query: 91 HLPRALVRSTTKTSGPRAAPEVYAFA-TPEWLGSRDKRTLTCLIQNFMPEDISVQWLHNE 149
H +++ + T+ PEV F+ +P LG + TL CL+ N P +++ WL N
Sbjct: 94 HNLNIVIKRSNSTAATNEVPEVTVFSKSPVTLGQPN--TLICLVDNIFPPVVNITWLSNG 151
Query: 150 VQLPDAQHSTTQPRKTKGSGFFI 172
+ + T+ K+ S F I
Sbjct: 152 HSVTEGVSETSFLSKSDHSFFKI 174
>gi|189083836 Fc fragment of IgG, low affinity IIIa, receptor
(CD16a) isoform b precursor [Homo sapiens]
Length = 289
Score = 36.2 bits (82), Expect = 0.021
Identities = 27/83 (32%), Positives = 40/83 (48%), Gaps = 5/83 (6%)
Query: 70 LPVGTRDWIEGETYQCRVTHPHL-PRALVRSTTKTSGPRA-APEVYAFATPEWLGSRDKR 127
+P+G R + QC + L P AL+ + +G R P+ F P+W +K
Sbjct: 19 VPLGLRISLVTCPLQCGIMWQLLLPTALLLLVS--AGMRTDLPKAVVFLEPQWYRVLEKD 76
Query: 128 TLTCLIQN-FMPEDISVQWLHNE 149
++T Q + PED S QW HNE
Sbjct: 77 SVTLKCQGAYSPEDNSTQWFHNE 99
>gi|18426975 major histocompatibility complex, class II, DQ alpha 1
precursor [Homo sapiens]
Length = 255
Score = 36.2 bits (82), Expect = 0.021
Identities = 23/83 (27%), Positives = 38/83 (45%), Gaps = 3/83 (3%)
Query: 91 HLPRALVRSTTKTSGPRAAPEVYAFA-TPEWLGSRDKRTLTCLIQNFMPEDISVQWLHNE 149
H +++ T+ PEV F+ +P LG + TL CL+ N P +++ WL N
Sbjct: 94 HNLNIMIKRYNSTAATNEVPEVTVFSKSPVTLGQPN--TLICLVDNIFPPVVNITWLSNG 151
Query: 150 VQLPDAQHSTTQPRKTKGSGFFI 172
+ + T+ K+ S F I
Sbjct: 152 QSVTEGVSETSFLSKSDHSFFKI 174
>gi|189083842 Fc fragment of IgG, low affinity IIIa, receptor
(CD16a) isoform d precursor [Homo sapiens]
Length = 253
Score = 35.8 bits (81), Expect = 0.028
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 110 PEVYAFATPEWLGSRDKRTLTCLIQN-FMPEDISVQWLHNE 149
P+ F P+W +K ++T Q + PED S QW HNE
Sbjct: 23 PKAVVFLEPQWYRVLEKDSVTLKCQGAYSPEDNSTQWFHNE 63
>gi|239758047 PREDICTED: similar to hCG2039165 [Homo sapiens]
Length = 103
Score = 35.8 bits (81), Expect = 0.028
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 110 PEVYAFATPEWLGSRDKRTLTCLIQN-FMPEDISVQWLHNE 149
P+ F P+W +K ++T Q + PED S QW HNE
Sbjct: 7 PKAVVFLEPQWYRVLEKDSVTLKCQGAYSPEDNSTQWFHNE 47
>gi|94538339 signal-regulatory protein gamma isoform 3 precursor
[Homo sapiens]
Length = 276
Score = 35.8 bits (81), Expect = 0.028
Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 2/68 (2%)
Query: 128 TLTCLIQNFMPEDISVQWLHNEVQLPDAQHSTTQPRKTKGSGFFIFSRLEVTRAEWEQKD 187
+ TC F P DI+++W N +L D Q T + + I S V W+ +
Sbjct: 165 SFTCESHGFSPRDITLKWFKNGNELSDFQ--TNVDPTGQSVAYSIRSTARVVLDPWDVRS 222
Query: 188 EFICRAVH 195
+ IC H
Sbjct: 223 QVICEVAH 230
>gi|94538335 signal-regulatory protein gamma isoform 1 precursor
[Homo sapiens]
Length = 387
Score = 35.8 bits (81), Expect = 0.028
Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 2/68 (2%)
Query: 128 TLTCLIQNFMPEDISVQWLHNEVQLPDAQHSTTQPRKTKGSGFFIFSRLEVTRAEWEQKD 187
+ TC F P DI+++W N +L D Q T + + I S V W+ +
Sbjct: 165 SFTCESHGFSPRDITLKWFKNGNELSDFQ--TNVDPTGQSVAYSIRSTARVVLDPWDVRS 222
Query: 188 EFICRAVH 195
+ IC H
Sbjct: 223 QVICEVAH 230
Score = 33.5 bits (75), Expect = 0.14
Identities = 24/113 (21%), Positives = 44/113 (38%), Gaps = 3/113 (2%)
Query: 37 VNLTWSRASGKPVNHSTRKEEKQRNGTLTVTSTLPVGTRDWIEGETYQCRVTHPHLPRAL 96
+ L W + + + T + ++ ++ ST V W C V H L
Sbjct: 178 ITLKWFKNGNELSDFQTNVDPTGQSVAYSIRSTARVVLDPWDVRSQVICEVAHVTLQGDP 237
Query: 97 VRSTTKTSGP-RAAPEVYAFATPEWLGSRDKRTLTCLIQNFMPEDISVQWLHN 148
+R T S R P + P +G++ +TC ++ F P+ + + W N
Sbjct: 238 LRGTANLSEAIRVPPTLEVTQQPMRVGNQVN--VTCQVRKFYPQSLQLTWSEN 288
>gi|18765715 major histocompatibility complex, class II, DM alpha
precursor [Homo sapiens]
Length = 261
Score = 34.7 bits (78), Expect = 0.062
Identities = 23/69 (33%), Positives = 27/69 (39%), Gaps = 5/69 (7%)
Query: 128 TLTCLIQNFMPEDISVQWLHNEVQLPDAQHSTTQPRKTKGSGFFIFSRLEVTRAEWEQKD 187
TL C + N P ++V W H+ V P T G F FS L T E D
Sbjct: 144 TLVCFVSNLFPPMLTVNWQHHSV--PVEGFGPTFVSAVDGLSFQAFSYLNFTP---EPSD 198
Query: 188 EFICRAVHE 196
F C HE
Sbjct: 199 IFSCIVTHE 207
>gi|50511926 Fc fragment of IgG, low affinity IIb, receptor isoform
3 [Homo sapiens]
Length = 291
Score = 33.9 bits (76), Expect = 0.11
Identities = 21/59 (35%), Positives = 27/59 (45%), Gaps = 7/59 (11%)
Query: 106 PRAAPEVYAFATPEWLG--SRDKRTLTCLIQNFMPEDISVQWLHNEVQLPDAQHSTTQP 162
P A P+ P+W+ D TLTC PE S+QW HN +P + TQP
Sbjct: 44 PAAPPKAVLKLEPQWINVLQEDSVTLTCR-GTHSPESDSIQWFHNGNLIP----THTQP 97
>gi|50511930 Fc fragment of IgG, low affinity IIb, receptor isoform
1 [Homo sapiens]
Length = 310
Score = 33.9 bits (76), Expect = 0.11
Identities = 21/59 (35%), Positives = 27/59 (45%), Gaps = 7/59 (11%)
Query: 106 PRAAPEVYAFATPEWLG--SRDKRTLTCLIQNFMPEDISVQWLHNEVQLPDAQHSTTQP 162
P A P+ P+W+ D TLTC PE S+QW HN +P + TQP
Sbjct: 44 PAAPPKAVLKLEPQWINVLQEDSVTLTCR-GTHSPESDSIQWFHNGNLIP----THTQP 97
>gi|50511928 Fc fragment of IgG, low affinity IIb, receptor isoform
4 [Homo sapiens]
Length = 309
Score = 33.1 bits (74), Expect = 0.18
Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 7/61 (11%)
Query: 104 SGPRAAPEVYAFATPEWLG--SRDKRTLTCLIQNFMPEDISVQWLHNEVQLPDAQHSTTQ 161
+G A P+ P+W+ D TLTC PE S+QW HN +P + TQ
Sbjct: 41 AGTPAPPKAVLKLEPQWINVLQEDSVTLTCR-GTHSPESDSIQWFHNGNLIP----THTQ 95
Query: 162 P 162
P
Sbjct: 96 P 96
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.129 0.402
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,344,789
Number of Sequences: 37866
Number of extensions: 422273
Number of successful extensions: 1179
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 66
Number of HSP's that attempted gapping in prelim test: 1071
Number of HSP's gapped (non-prelim): 169
length of query: 214
length of database: 18,247,518
effective HSP length: 98
effective length of query: 116
effective length of database: 14,536,650
effective search space: 1686251400
effective search space used: 1686251400
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.