Guide to the Human Genome
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Name: LOC100287284 Sequence: fasta or formatted (380aa) NCBI GI: 239750271
Description:

PREDICTED: similar to hCG1642672

Not currently referenced in the text

Other entries for this name:
alt mRNA {380aa} PREDICTED: hypothetical protein XP_002343190
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.7         14           1
 C cysteine            3.7         14           2
 D aspartate           5.3         20           2
 E glutamate           3.9         15           2
 F phenylalanine       4.5         17           2
 G glycine             5.5         21           2
 H histidine           2.1          8           1
 I isoleucine          5.0         19           1
 K lysine              5.8         22           1
 L leucine            10.0         38           2
 M methionine          1.6          6           1
 N asparagine          7.1         27           2
 P proline             5.0         19           2
 Q glutamine           3.4         13           2
 R arginine            5.5         21           2
 S serine             12.6         48           3
 T threonine           7.6         29           3
 V valine              3.4         13           2
 W tryptophan          1.3          5           1
 Y tyrosine            2.9         11           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to hCG1642672 
LOC100287284          1.000   PREDICTED: hypothetical protein XP_002343190 
LOC100133893          0.996   PREDICTED: MANSC domain-containing protein 
LOC100133893          0.777   MANSC domain-containing protein 
MUC3A                 0.016   PREDICTED: mucin 3A, cell surface associated, parti...
MUC3A                 0.016   PREDICTED: mucin 3A, intestinal 
IMPG2                 0.016   interphotoreceptor matrix proteoglycan 2 
ARHGAP5               0.013   Rho GTPase activating protein 5 isoform a 
ARHGAP5               0.013   Rho GTPase activating protein 5 isoform b 
MUC3B                 0.013   PREDICTED: mucin 3B, cell surface associated, parti...
LOC100131251          0.011   PREDICTED: hypothetical protein 
LOC100131251          0.011   PREDICTED: hypothetical protein 
SYT2                  0.009   synaptotagmin II 
SYT2                  0.009   synaptotagmin II 
NAT10                 0.008   N-acetyltransferase 10 isoform b 
NAT10                 0.008   N-acetyltransferase 10 isoform a 
MANSC1                0.008   MANSC domain containing 1 
USP26                 0.007   ubiquitin-specific protease 26 
MUC21                 0.007   mucin 21 
LOC100129278          0.007   PREDICTED: similar to tudor domain containing 1 [Ho...
LOC100129278          0.007   PREDICTED: similar to tudor domain containing 1 [Ho...
LOC100129278          0.007   PREDICTED: similar to tudor domain containing 1 [Ho...
ZNF34                 0.007   zinc finger protein 34 
CHMP1B                0.005   chromatin modifying protein 1B 
MBD5                  0.005   methyl-CpG binding domain protein 5 
MUC16                 0.005   mucin 16 
C12orf35              0.005   hypothetical protein LOC55196 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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