Guide to the Human Genome
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Name: LOC100287397 Sequence: fasta or formatted (522aa) NCBI GI: 239750182
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt prot {471aa} PREDICTED: hypothetical protein XP_002343164
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.3         38           2
 C cysteine            2.5         13           1
 D aspartate           1.5          8           1
 E glutamate           6.3         33           6
 F phenylalanine       2.5         13           2
 G glycine             9.6         50           3
 H histidine           3.4         18           2
 I isoleucine          1.3          7           1
 K lysine              2.7         14           1
 L leucine            10.5         55           5
 M methionine          1.7          9           1
 N asparagine          1.3          7           1
 P proline             8.2         43           2
 Q glutamine           5.0         26           2
 R arginine           10.2         53           2
 S serine             13.2         69           3
 T threonine           4.6         24           2
 V valine              3.6         19           2
 W tryptophan          3.1         16           1
 Y tyrosine            1.3          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100293795          1.000   PREDICTED: hypothetical protein 
LOC100287397          0.836   PREDICTED: hypothetical protein XP_002343164 
LOC100127987          0.010   PREDICTED: hypothetical protein LOC100127987 
LOC100127987          0.009   PREDICTED: hypothetical protein LOC100127987 
LOC100293375          0.009   PREDICTED: hypothetical protein 
LOC100127987          0.009   PREDICTED: hypothetical protein LOC100127987 
LOC100291961          0.009   PREDICTED: hypothetical protein XP_002345135 
HRNR                  0.009   hornerin 
LOC100292349          0.008   PREDICTED: hypothetical protein 
LOC100288261          0.008   PREDICTED: hypothetical protein 
LOC100288261          0.008   PREDICTED: hypothetical protein XP_002343181 
IRS2                  0.008   insulin receptor substrate 2 
KIAA0754              0.008   hypothetical protein LOC643314 
OPN4                  0.007   opsin 4 isoform 2 
OPN4                  0.007   opsin 4 isoform 1 
TNRC18                0.007   trinucleotide repeat containing 18 
ZBTB17                0.007   zinc finger and BTB domain containing 17 
LOC100292294          0.007   PREDICTED: hypothetical protein 
LOC100289924          0.007   PREDICTED: hypothetical protein XP_002346722 
LOC100287776          0.007   PREDICTED: hypothetical protein XP_002342571 
CCDC88C               0.007   DVL-binding protein DAPLE 
NELF                  0.007   nasal embryonic LHRH factor isoform d 
NELF                  0.007   nasal embryonic LHRH factor isoform c 
NELF                  0.007   nasal embryonic LHRH factor isoform a 
NELF                  0.007   nasal embryonic LHRH factor isoform b 
SCRIB                 0.007   scribble isoform b 
SCRIB                 0.007   scribble isoform a 
ING3                  0.006   inhibitor of growth family, member 3 isoform 1 [Homo...
ABHD15                0.006   abhydrolase domain containing 15 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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