Guide to the Human Genome
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Name: LOC100292349 Sequence: fasta or formatted (108aa) NCBI GI: 239755730
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            16.7         18           1
 C cysteine            4.6          5           1
 D aspartate           3.7          4           1
 E glutamate           3.7          4           1
 F phenylalanine       0.0          0           0
 G glycine             8.3          9           2
 H histidine           0.0          0           0
 I isoleucine          3.7          4           1
 K lysine              0.9          1           1
 L leucine             4.6          5           2
 M methionine          1.9          2           1
 N asparagine          1.9          2           1
 P proline            17.6         19           2
 Q glutamine           1.9          2           1
 R arginine            7.4          8           1
 S serine             13.0         14           2
 T threonine           5.6          6           2
 V valine              1.9          2           1
 W tryptophan          1.9          2           1
 Y tyrosine            0.9          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100288261          1.000   PREDICTED: hypothetical protein 
LOC100288261          1.000   PREDICTED: hypothetical protein XP_002343181 
NACA                  0.074   nascent polypeptide-associated complex alpha subuni...
TAF4                  0.069   TBP-associated factor 4 
MAST3                 0.069   microtubule associated serine/threonine kinase 3 [H...
FCHO1                 0.064   FCH domain only 1 isoform c 
FCHO1                 0.064   FCH domain only 1 isoform b 
FCHO1                 0.064   FCH domain only 1 isoform b 
FCHO1                 0.064   FCH domain only 1 isoform a 
MED25                 0.064   mediator complex subunit 25 
DRD4                  0.059   dopamine receptor D4 
LOC100289775          0.059   PREDICTED: hypothetical protein XP_002348164 
KIAA1522              0.059   hypothetical protein LOC57648 
LOC731312             0.059   PREDICTED: hypothetical protein 
LOC100287641          0.059   PREDICTED: hypothetical protein XP_002343929 
FMNL2                 0.059   formin-like 2 
ZNF414                0.059   zinc finger protein 414 isoform 1 
ZNF414                0.059   zinc finger protein 414 isoform 2 
TNKS1BP1              0.054   tankyrase 1-binding protein 1 
MUC7                  0.054   mucin 7, secreted precursor 
LOC731312             0.054   PREDICTED: hypothetical protein 
MUC7                  0.054   mucin 7, secreted precursor 
MUC7                  0.054   mucin 7, secreted precursor 
MICALL2               0.049   MICAL-like 2 isoform 1 
ENAH                  0.049   enabled homolog isoform a 
ENAH                  0.049   enabled homolog isoform b 
KRTAP4-6              0.049   PREDICTED: keratin associated protein 4.6 
SALL3                 0.049   sal-like 3 
LMTK3                 0.049   lemur tyrosine kinase 3 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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