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Search of human proteins with 239749439
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239749439 PREDICTED: similar to transcription factor 23
[Homo sapiens]
(167 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239749439 PREDICTED: similar to transcription factor 23 [Homo... 338 2e-93
gi|239743573 PREDICTED: similar to transcription factor 23 [Homo... 338 2e-93
gi|239754900 PREDICTED: similar to transcription factor 23 [Homo... 326 6e-90
gi|75677394 transcription factor 23 [Homo sapiens] 130 5e-31
gi|116805332 musculin [Homo sapiens] 79 2e-15
gi|38202237 transcription factor 21 [Homo sapiens] 74 8e-14
gi|38202239 transcription factor 21 [Homo sapiens] 74 8e-14
gi|12545384 basic helix-loop-helix transcription factor HAND2 [H... 72 2e-13
gi|4758506 basic helix-loop-helix transcription factor HAND1 [Ho... 70 1e-12
gi|29126247 basic helix-loop-helix family, member a15 [Homo sapi... 65 2e-11
gi|4507741 twist [Homo sapiens] 65 4e-11
gi|5031943 nescient helix loop helix 1 [Homo sapiens] 65 4e-11
gi|48255909 basic helix-loop-helix transcription factor 15 [Homo... 64 5e-11
gi|161484632 nescient helix loop helix 2 [Homo sapiens] 58 3e-09
gi|5031945 nescient helix loop helix 2 [Homo sapiens] 58 3e-09
gi|34147558 lymphoblastic leukemia derived sequence 1 [Homo sapi... 56 2e-08
gi|148922889 scleraxis homolog B [Homo sapiens] 54 5e-08
gi|186972126 scleraxis homolog A [Homo sapiens] 54 5e-08
gi|21553337 atonal homolog 7 [Homo sapiens] 54 6e-08
gi|14149724 mesoderm posterior 1 [Homo sapiens] 53 1e-07
gi|4507363 T-cell acute lymphocytic leukemia 1 [Homo sapiens] 51 5e-07
gi|90403598 mesoderm posterior 2 homolog [Homo sapiens] 50 9e-07
gi|17981708 twist homolog 2 [Homo sapiens] 49 2e-06
gi|30039710 pancreas specific transcription factor, 1a [Homo sap... 48 4e-06
gi|4885075 atonal homolog 1 [Homo sapiens] 46 1e-05
gi|22748877 basic helix-loop-helix domain containing, class B, 5... 46 1e-05
gi|226498192 atonal homolog 8 [Homo sapiens] 45 3e-05
gi|4885619 T-cell acute lymphocytic leukemia 2 [Homo sapiens] 45 4e-05
gi|237757328 oligodendrocyte transcription factor 1 [Homo sapiens] 44 5e-05
gi|207452735 epiplakin 1 [Homo sapiens] 44 6e-05
>gi|239749439 PREDICTED: similar to transcription factor 23 [Homo
sapiens]
Length = 167
Score = 338 bits (866), Expect = 2e-93
Identities = 167/167 (100%), Positives = 167/167 (100%)
Query: 1 MDRGRPAGSPLSASAEPAPLAAAIRDSRPGRTGPGPAGPGGGSRSGSGRPAAANAARERS 60
MDRGRPAGSPLSASAEPAPLAAAIRDSRPGRTGPGPAGPGGGSRSGSGRPAAANAARERS
Sbjct: 1 MDRGRPAGSPLSASAEPAPLAAAIRDSRPGRTGPGPAGPGGGSRSGSGRPAAANAARERS 60
Query: 61 RVQTLRHAFLELQRTLPSVPPDTKLSKLDVLLLATTYIAHLTRSLQDDAEAPADAGLGAL 120
RVQTLRHAFLELQRTLPSVPPDTKLSKLDVLLLATTYIAHLTRSLQDDAEAPADAGLGAL
Sbjct: 61 RVQTLRHAFLELQRTLPSVPPDTKLSKLDVLLLATTYIAHLTRSLQDDAEAPADAGLGAL 120
Query: 121 RGDGYLHPVKKWPMRSRLYIGATGQFLKHSVSGEKTNHDNTPTDSQP 167
RGDGYLHPVKKWPMRSRLYIGATGQFLKHSVSGEKTNHDNTPTDSQP
Sbjct: 121 RGDGYLHPVKKWPMRSRLYIGATGQFLKHSVSGEKTNHDNTPTDSQP 167
>gi|239743573 PREDICTED: similar to transcription factor 23 [Homo
sapiens]
Length = 167
Score = 338 bits (866), Expect = 2e-93
Identities = 167/167 (100%), Positives = 167/167 (100%)
Query: 1 MDRGRPAGSPLSASAEPAPLAAAIRDSRPGRTGPGPAGPGGGSRSGSGRPAAANAARERS 60
MDRGRPAGSPLSASAEPAPLAAAIRDSRPGRTGPGPAGPGGGSRSGSGRPAAANAARERS
Sbjct: 1 MDRGRPAGSPLSASAEPAPLAAAIRDSRPGRTGPGPAGPGGGSRSGSGRPAAANAARERS 60
Query: 61 RVQTLRHAFLELQRTLPSVPPDTKLSKLDVLLLATTYIAHLTRSLQDDAEAPADAGLGAL 120
RVQTLRHAFLELQRTLPSVPPDTKLSKLDVLLLATTYIAHLTRSLQDDAEAPADAGLGAL
Sbjct: 61 RVQTLRHAFLELQRTLPSVPPDTKLSKLDVLLLATTYIAHLTRSLQDDAEAPADAGLGAL 120
Query: 121 RGDGYLHPVKKWPMRSRLYIGATGQFLKHSVSGEKTNHDNTPTDSQP 167
RGDGYLHPVKKWPMRSRLYIGATGQFLKHSVSGEKTNHDNTPTDSQP
Sbjct: 121 RGDGYLHPVKKWPMRSRLYIGATGQFLKHSVSGEKTNHDNTPTDSQP 167
>gi|239754900 PREDICTED: similar to transcription factor 23 [Homo
sapiens]
Length = 167
Score = 326 bits (835), Expect = 6e-90
Identities = 162/167 (97%), Positives = 163/167 (97%)
Query: 1 MDRGRPAGSPLSASAEPAPLAAAIRDSRPGRTGPGPAGPGGGSRSGSGRPAAANAARERS 60
MDRGRPAGSPLSASAEPAPLAAAIRD RPGRTGPGPAG GGGS SGSGRPAA NAARERS
Sbjct: 1 MDRGRPAGSPLSASAEPAPLAAAIRDXRPGRTGPGPAGLGGGSCSGSGRPAAENAARERS 60
Query: 61 RVQTLRHAFLELQRTLPSVPPDTKLSKLDVLLLATTYIAHLTRSLQDDAEAPADAGLGAL 120
RVQTLRHAFLE+QRTLPSVPPDTKLSKLDVLLLATTYIAHLTRSLQDDAEAPADAGLGAL
Sbjct: 61 RVQTLRHAFLEVQRTLPSVPPDTKLSKLDVLLLATTYIAHLTRSLQDDAEAPADAGLGAL 120
Query: 121 RGDGYLHPVKKWPMRSRLYIGATGQFLKHSVSGEKTNHDNTPTDSQP 167
RGDGYLHPVKKWPMRSRLYIGATGQFLKHSVSGEKTNHDNTPTDSQP
Sbjct: 121 RGDGYLHPVKKWPMRSRLYIGATGQFLKHSVSGEKTNHDNTPTDSQP 167
>gi|75677394 transcription factor 23 [Homo sapiens]
Length = 214
Score = 130 bits (327), Expect = 5e-31
Identities = 73/120 (60%), Positives = 81/120 (67%), Gaps = 3/120 (2%)
Query: 26 DSRPGRTGPGPAGP-GGGSRSGSGRPAAANAARERSRVQTLRHAFLELQRTLPSVPPDTK 84
+ R R PGP G GG G + NAARERSRV+TLR AFL LQ LP+VPPDTK
Sbjct: 52 NQRWSRATPGPRGTRAGGLALGRSEASPENAARERSRVRTLRQAFLALQAALPAVPPDTK 111
Query: 85 LSKLDVLLLATTYIAHLTRSLQDDAEAPADAGLGALRGDGYLHPVKKWPMRSRLYIGATG 144
LSKLDVL+LA +YIAHLTR+L E P A LRG YLHP+KKWPMRSRLY G G
Sbjct: 112 LSKLDVLVLAASYIAHLTRTL--GHELPGPAWPPFLRGLRYLHPLKKWPMRSRLYAGGLG 169
>gi|116805332 musculin [Homo sapiens]
Length = 206
Score = 78.6 bits (192), Expect = 2e-15
Identities = 54/141 (38%), Positives = 68/141 (48%), Gaps = 24/141 (17%)
Query: 6 PAGSPLSASAEPAPLAAAIRDSRPGRTGPGPAGPGGGSRSGSGRPAAANAA--------- 56
P G + A A + RP G G AG G PA +AA
Sbjct: 52 PDGEEERCALGTAGSAEGCKRKRPRVAGGGGAGGSAGGGGKKPLPAKGSAAECKQSQRNA 111
Query: 57 ---RERSRVQTLRHAFLELQRTLPSVPPDTKLSKLDVLLLATTYIAHLTRSLQDDAEAPA 113
RER+R++ L AF L+ +LP VPPDTKLSKLD L LA++YIAHL + LQ+D
Sbjct: 112 ANARERARMRVLSKAFSRLKTSLPWVPPDTKLSKLDTLRLASSYIAHLRQLLQEDRYE-- 169
Query: 114 DAGLGALRGDGYLHPVK-KWP 133
+GY+HPV WP
Sbjct: 170 ---------NGYVHPVNLTWP 181
>gi|38202237 transcription factor 21 [Homo sapiens]
Length = 179
Score = 73.6 bits (179), Expect = 8e-14
Identities = 47/105 (44%), Positives = 58/105 (55%), Gaps = 13/105 (12%)
Query: 31 RTGPGPAGP-GGGSRSGSGRPAAANAARERSRVQTLRHAFLELQRTLPSVPPDTKLSKLD 89
R P P G S+ G A ARER+R++ L AF L+ TLP VPPDTKLSKLD
Sbjct: 60 RKAPTKKSPLSGVSQEGKQVQRNAANARERARMRVLSKAFSRLKTTLPWVPPDTKLSKLD 119
Query: 90 VLLLATTYIAHLTRSLQDDAEAPADAGLGALRGDGYLHPVK-KWP 133
L LA++YIAHL + L +D +GY+HPV WP
Sbjct: 120 TLRLASSYIAHLRQILANDKYE-----------NGYIHPVNLTWP 153
>gi|38202239 transcription factor 21 [Homo sapiens]
Length = 179
Score = 73.6 bits (179), Expect = 8e-14
Identities = 47/105 (44%), Positives = 58/105 (55%), Gaps = 13/105 (12%)
Query: 31 RTGPGPAGP-GGGSRSGSGRPAAANAARERSRVQTLRHAFLELQRTLPSVPPDTKLSKLD 89
R P P G S+ G A ARER+R++ L AF L+ TLP VPPDTKLSKLD
Sbjct: 60 RKAPTKKSPLSGVSQEGKQVQRNAANARERARMRVLSKAFSRLKTTLPWVPPDTKLSKLD 119
Query: 90 VLLLATTYIAHLTRSLQDDAEAPADAGLGALRGDGYLHPVK-KWP 133
L LA++YIAHL + L +D +GY+HPV WP
Sbjct: 120 TLRLASSYIAHLRQILANDKYE-----------NGYIHPVNLTWP 153
>gi|12545384 basic helix-loop-helix transcription factor HAND2 [Homo
sapiens]
Length = 217
Score = 72.0 bits (175), Expect = 2e-13
Identities = 51/119 (42%), Positives = 63/119 (52%), Gaps = 8/119 (6%)
Query: 4 GRPAGSP------LSASAEPAPLAAAIRDSRPGRTGPGPAGPGGGSRSGSGRPAAANAAR 57
G P SP LS S E A AA + S G PG PG G R AN +
Sbjct: 49 GHPEMSPPDYSMALSYSPEYASGAAGLDHSHYGGVPPGAGPPGLGGPRPVKRRGTANR-K 107
Query: 58 ERSRVQTLRHAFLELQRTLPSVPPDTKLSKLDVLLLATTYIAHLTRSL-QDDAEAPADA 115
ER R Q++ AF EL+ +P+VP DTKLSK+ L LAT+YIA+L L +DD A+A
Sbjct: 108 ERRRTQSINSAFAELRECIPNVPADTKLSKIKTLRLATSYIAYLMDLLAKDDQNGEAEA 166
>gi|4758506 basic helix-loop-helix transcription factor HAND1 [Homo
sapiens]
Length = 215
Score = 69.7 bits (169), Expect = 1e-12
Identities = 46/108 (42%), Positives = 62/108 (57%), Gaps = 10/108 (9%)
Query: 6 PAGSPLSASAEPAPLAAAIRDSRPGRTGPGPAGPGG--GSRSGSGRPAAANAARERSRVQ 63
PAG P A+A A A D+RPG++ GG G R GSG +ER R +
Sbjct: 57 PAGGPPPAAAAAA--TAYGPDARPGQSPGRLEALGGRLGRRKGSG------PKKERRRTE 108
Query: 64 TLRHAFLELQRTLPSVPPDTKLSKLDVLLLATTYIAHLTRSLQDDAEA 111
++ AF EL+ +P+VP DTKLSK+ L LAT+YIA+L L DA++
Sbjct: 109 SINSAFAELRECIPNVPADTKLSKIKTLRLATSYIAYLMDVLAKDAQS 156
>gi|29126247 basic helix-loop-helix family, member a15 [Homo
sapiens]
Length = 189
Score = 65.5 bits (158), Expect = 2e-11
Identities = 45/109 (41%), Positives = 56/109 (51%), Gaps = 8/109 (7%)
Query: 4 GRPAGSPLSASAEPA------PLAAAIRDSRPGRTG-PGPAGPGGGSRSGSGRPAAANAA 56
G P GS + EPA P AA R GR PGP+GPGG S R +N
Sbjct: 24 GTPDGSLPNPGPEPAKGLRSRPARAAARAPGEGRRRRPGPSGPGGRRDSSIQRRLESNE- 82
Query: 57 RERSRVQTLRHAFLELQRTLPSVPPDTKLSKLDVLLLATTYIAHLTRSL 105
RER R+ L +AF L+ +P V D KLSK++ L LA YI LT ++
Sbjct: 83 RERQRMHKLNNAFQALREVIPHVRADKKLSKIETLTLAKNYIKSLTATI 131
>gi|4507741 twist [Homo sapiens]
Length = 202
Score = 64.7 bits (156), Expect = 4e-11
Identities = 45/115 (39%), Positives = 56/115 (48%), Gaps = 11/115 (9%)
Query: 4 GRPAGSPLSASAEPAPLAAAIRDSRP-GRTGPGPAGPGGGSRSGSGRPAAANA------- 55
G AG + EP A R + G G G AG GGGS SG G P +
Sbjct: 53 GGAAGGGVGGGDEPGSPAQGKRGKKSAGCGGGGGAGGGGGSSSGGGSPQSYEELQTQRVM 112
Query: 56 --ARERSRVQTLRHAFLELQRTLPSVPPDTKLSKLDVLLLATTYIAHLTRSLQDD 108
RER R Q+L AF L++ +P++P D KLSK+ L LA YI L + LQ D
Sbjct: 113 ANVRERQRTQSLNEAFAALRKIIPTLPSD-KLSKIQTLKLAARYIDFLYQVLQSD 166
>gi|5031943 nescient helix loop helix 1 [Homo sapiens]
Length = 133
Score = 64.7 bits (156), Expect = 4e-11
Identities = 39/101 (38%), Positives = 50/101 (49%), Gaps = 25/101 (24%)
Query: 30 GRTGPGPAGPGGGSRSGS--GRPA-----------------------AANAARERSRVQT 64
G G GP GPGGG G G P A+A RER RV+
Sbjct: 31 GPDGAGPGGPGGGQARGPEPGEPGRKDLQHLSREERRRRRRATAKYRTAHATRERIRVEA 90
Query: 65 LRHAFLELQRTLPSVPPDTKLSKLDVLLLATTYIAHLTRSL 105
AF EL++ LP++PPD KLSK+++L LA YI++L L
Sbjct: 91 FNLAFAELRKLLPTLPPDKKLSKIEILRLAICYISYLNHVL 131
>gi|48255909 basic helix-loop-helix transcription factor 15 [Homo
sapiens]
Length = 199
Score = 64.3 bits (155), Expect = 5e-11
Identities = 43/106 (40%), Positives = 56/106 (52%), Gaps = 18/106 (16%)
Query: 31 RTGPGPAGPGGGSRSGSG---------RPAAANAARERSRVQTLRHAFLELQRTLPSVPP 81
R GPGP GGG R+G G R A ARER R Q++ AF L+ +P+ P
Sbjct: 48 RRGPGP---GGGRRAGGGGGAGPVVVVRQRQAANARERDRTQSVNTAFTALRTLIPTEPV 104
Query: 82 DTKLSKLDVLLLATTYIAHLTRSL-----QDDAEAPADAGLGALRG 122
D KLSK++ L LA++YIAHL L DD + P G+ +G
Sbjct: 105 DRKLSKIETLRLASSYIAHLANVLLLGDSADDGQ-PCFRAAGSAKG 149
>gi|161484632 nescient helix loop helix 2 [Homo sapiens]
Length = 135
Score = 58.2 bits (139), Expect = 3e-09
Identities = 28/62 (45%), Positives = 42/62 (67%)
Query: 44 RSGSGRPAAANAARERSRVQTLRHAFLELQRTLPSVPPDTKLSKLDVLLLATTYIAHLTR 103
R + + +A+A RER RV+ AF EL++ LP++PPD KLSK+++L LA YI++L
Sbjct: 72 RRATAKYRSAHATRERIRVEAFNLAFAELRKLLPTLPPDKKLSKIEILRLAICYISYLNH 131
Query: 104 SL 105
L
Sbjct: 132 VL 133
>gi|5031945 nescient helix loop helix 2 [Homo sapiens]
Length = 135
Score = 58.2 bits (139), Expect = 3e-09
Identities = 28/62 (45%), Positives = 42/62 (67%)
Query: 44 RSGSGRPAAANAARERSRVQTLRHAFLELQRTLPSVPPDTKLSKLDVLLLATTYIAHLTR 103
R + + +A+A RER RV+ AF EL++ LP++PPD KLSK+++L LA YI++L
Sbjct: 72 RRATAKYRSAHATRERIRVEAFNLAFAELRKLLPTLPPDKKLSKIEILRLAICYISYLNH 131
Query: 104 SL 105
L
Sbjct: 132 VL 133
>gi|34147558 lymphoblastic leukemia derived sequence 1 [Homo
sapiens]
Length = 280
Score = 55.8 bits (133), Expect = 2e-08
Identities = 31/58 (53%), Positives = 38/58 (65%)
Query: 56 ARERSRVQTLRHAFLELQRTLPSVPPDTKLSKLDVLLLATTYIAHLTRSLQDDAEAPA 113
+RER R Q + AF EL++ LP+ PPD KLSK +VL LA YI L R L+D A A A
Sbjct: 157 SRERWRQQNVNGAFAELRKLLPTHPPDRKLSKNEVLRLAMKYIGFLVRLLRDQAAALA 214
>gi|148922889 scleraxis homolog B [Homo sapiens]
Length = 201
Score = 54.3 bits (129), Expect = 5e-08
Identities = 31/74 (41%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 28 RPGRTGPGPAGPGGGSRSGSGRPAAANAARERSRVQTLRHAFLELQRTLPSVPPDTKLSK 87
R G G GPGG + ANA RER R ++ AF L+ +P+ P D KLSK
Sbjct: 55 RAGGRRAGGGGPGGRPGREPRQRHTANA-RERDRTNSVNTAFTALRTLIPTEPADRKLSK 113
Query: 88 LDVLLLATTYIAHL 101
++ L LA++YI+HL
Sbjct: 114 IETLRLASSYISHL 127
>gi|186972126 scleraxis homolog A [Homo sapiens]
Length = 201
Score = 54.3 bits (129), Expect = 5e-08
Identities = 31/74 (41%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 28 RPGRTGPGPAGPGGGSRSGSGRPAAANAARERSRVQTLRHAFLELQRTLPSVPPDTKLSK 87
R G G GPGG + ANA RER R ++ AF L+ +P+ P D KLSK
Sbjct: 55 RAGGRRAGGGGPGGRPGREPRQRHTANA-RERDRTNSVNTAFTALRTLIPTEPADRKLSK 113
Query: 88 LDVLLLATTYIAHL 101
++ L LA++YI+HL
Sbjct: 114 IETLRLASSYISHL 127
>gi|21553337 atonal homolog 7 [Homo sapiens]
Length = 152
Score = 53.9 bits (128), Expect = 6e-08
Identities = 50/141 (35%), Positives = 62/141 (43%), Gaps = 15/141 (10%)
Query: 5 RPAGSPLSASAEPAPLAAAIRDSRPGRTGPGPAGPGGGSRSGSGRPAAANAARERSRVQT 64
+P+G P A P P A G G G S + R AANA RER R+Q
Sbjct: 5 KPSGPPAGARVAP-PCAG-------GTECAGTCAGAGRLESAARRRLAANA-RERRRMQG 55
Query: 65 LRHAFLELQRTLPSVPPDTKLSKLDVLLLATTYIAHLTRSLQDDAEAPADAGLGALR--- 121
L AF L+R +P D KLSK + L +A +YI LTR L + ++ L
Sbjct: 56 LNTAFDRLRRVVPQWGQDKKLSKYETLQMALSYIMALTRILAEAERFGSERDWVGLHCEH 115
Query: 122 --GDGYL-HPVKKWPMRSRLY 139
D YL P K P S LY
Sbjct: 116 FGRDHYLPFPGAKLPGESELY 136
>gi|14149724 mesoderm posterior 1 [Homo sapiens]
Length = 268
Score = 52.8 bits (125), Expect = 1e-07
Identities = 45/120 (37%), Positives = 59/120 (49%), Gaps = 17/120 (14%)
Query: 6 PAGSPLSASAEPAPLAAAIRDSRPGRTGPGPAGPGGGSRSGSGRPAAANAARERSRVQTL 65
PA SP+++ A P L RD R G A SR GSG+ +A+ RE+ R++TL
Sbjct: 47 PADSPVASPARPGTL----RDPRAPSVGRRGAR---SSRLGSGQRQSASE-REKLRMRTL 98
Query: 66 RHAFLELQRTLPS--VPPDTKLSKLDVLLLATTYIAHLT-------RSLQDDAEAPADAG 116
A EL+R LP P L+K++ L LA YI HL+ SLQ DAG
Sbjct: 99 ARALHELRRFLPPSVAPAGQSLTKIETLRLAIRYIGHLSAVLGLSEESLQRRCRQRGDAG 158
>gi|4507363 T-cell acute lymphocytic leukemia 1 [Homo sapiens]
Length = 331
Score = 50.8 bits (120), Expect = 5e-07
Identities = 26/55 (47%), Positives = 35/55 (63%)
Query: 56 ARERSRVQTLRHAFLELQRTLPSVPPDTKLSKLDVLLLATTYIAHLTRSLQDDAE 110
+RER R Q + AF EL++ +P+ PPD KLSK ++L LA YI L + L D E
Sbjct: 194 SRERWRQQNVNGAFAELRKLIPTHPPDKKLSKNEILRLAMKYINFLAKLLNDQEE 248
Score = 35.0 bits (79), Expect = 0.030
Identities = 21/48 (43%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
Query: 12 SASAEPAPLAAAIRDSRPGRTGPGPAGPGGGSRSGSGRPAAANAARER 59
+A+AEP + R G G GPAG GG +R GR AA AR R
Sbjct: 44 AAAAEPPVIELGAR----GGPGGGPAGGGGAARDLKGRDAATAEARHR 87
>gi|90403598 mesoderm posterior 2 homolog [Homo sapiens]
Length = 397
Score = 50.1 bits (118), Expect = 9e-07
Identities = 44/123 (35%), Positives = 54/123 (43%), Gaps = 23/123 (18%)
Query: 3 RGRPAGSPLSASAEPAPLAAAIRDSRPGRTGPGPAGPGGGSRSGSGRPAAANAARERSRV 62
RG P P S S+ A AA R RTGP GG R + RE+ R+
Sbjct: 49 RGLPQPQPPSCSSRAAEAAATT--PRRARTGPA-----GGQRQSASE-------REKLRM 94
Query: 63 QTLRHAFLELQRTLPS--VPPDTKLSKLDVLLLATTYIAHLT-------RSLQDDAEAPA 113
+TL A EL+R LP P L+K++ L LA YI HL+ SLQ
Sbjct: 95 RTLARALHELRRFLPPSLAPAGQSLTKIETLRLAIRYIGHLSAVLGLSEESLQCRRRQRG 154
Query: 114 DAG 116
DAG
Sbjct: 155 DAG 157
>gi|17981708 twist homolog 2 [Homo sapiens]
Length = 160
Score = 48.9 bits (115), Expect = 2e-06
Identities = 32/88 (36%), Positives = 43/88 (48%), Gaps = 5/88 (5%)
Query: 25 RDSRPGRTGPGPAGPGGGSRSGSGRPAAANA----ARERSRVQTLRHAFLELQRTLPSVP 80
+ S G PG G G + S + RER R Q+L AF L++ +P++P
Sbjct: 38 KSSEDGSPTPGKRGKKGSPSAQSFEELQSQRILANVRERQRTQSLNEAFAALRKIIPTLP 97
Query: 81 PDTKLSKLDVLLLATTYIAHLTRSLQDD 108
D KLSK+ L LA YI L + LQ D
Sbjct: 98 SD-KLSKIQTLKLAARYIDFLYQVLQSD 124
>gi|30039710 pancreas specific transcription factor, 1a [Homo
sapiens]
Length = 328
Score = 47.8 bits (112), Expect = 4e-06
Identities = 42/138 (30%), Positives = 56/138 (40%), Gaps = 27/138 (19%)
Query: 6 PAGSPLSASAEPAPLAAAIRDSRPGRTGPGPAGPGGGSRSGSGRPAAANA---------- 55
P G P S + P+ LA G PG R SG AAA
Sbjct: 108 PGGFPYSPGSPPSCLAYPC-------AGAAVLSPGARLRGLSGAAAAAARRRRRVRSEAE 160
Query: 56 ---------ARERSRVQTLRHAFLELQRTLPSVPPDTKLSKLDVLLLATTYIAHLTRSLQ 106
RER R+Q++ AF L+ +P++P + +LSK+D L LA YI L+ +Q
Sbjct: 161 LQQLRQAANVRERRRMQSINDAFEGLRSHIPTLPYEKRLSKVDTLRLAIGYINFLSELVQ 220
Query: 107 DDAEAPADAGLGALRGDG 124
D G G G G
Sbjct: 221 ADLPL-RGGGAGGCGGPG 237
>gi|4885075 atonal homolog 1 [Homo sapiens]
Length = 354
Score = 46.2 bits (108), Expect = 1e-05
Identities = 28/58 (48%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 49 RPAAANAARERSRVQTLRHAFLELQRTLPSVPPDTKLSKLDVLLLATTYIAHLTRSLQ 106
R AANA RER R+ L HAF +L+ +PS D KLSK + L +A YI L+ LQ
Sbjct: 160 RRLAANA-RERRRMHGLNHAFDQLRNVIPSFNNDKKLSKYETLQMAQIYINALSELLQ 216
>gi|22748877 basic helix-loop-helix domain containing, class B, 5
[Homo sapiens]
Length = 381
Score = 46.2 bits (108), Expect = 1e-05
Identities = 33/97 (34%), Positives = 48/97 (49%), Gaps = 19/97 (19%)
Query: 30 GRTGPGPAGPGGGSRSGSGRPAAANA-----------------ARERSRVQTLRHAFLEL 72
G + G +G GGGS SGSG +++++ ARER R+ L A EL
Sbjct: 206 GGSSSGSSGGGGGSGSGSGGSSSSSSSSSKKSKEQKALRLNINARERRRMHDLNDALDEL 265
Query: 73 QRTLPSV--PPDTKLSKLDVLLLATTYIAHLTRSLQD 107
+ +P P KLSK+ LLLA YI ++L++
Sbjct: 266 RAVIPYAHSPSVRKLSKIATLLLAKNYILMQAQALEE 302
Score = 32.0 bits (71), Expect = 0.25
Identities = 21/51 (41%), Positives = 22/51 (43%), Gaps = 3/51 (5%)
Query: 3 RGRPAGS---PLSASAEPAPLAAAIRDSRPGRTGPGPAGPGGGSRSGSGRP 50
R RPA S PL P A + PG G G AG GGG G G P
Sbjct: 51 RERPASSSSSPLGCFEPADPEGAGLLLPPPGGGGGGSAGSGGGGGGGVGVP 101
>gi|226498192 atonal homolog 8 [Homo sapiens]
Length = 321
Score = 45.1 bits (105), Expect = 3e-05
Identities = 42/133 (31%), Positives = 53/133 (39%), Gaps = 28/133 (21%)
Query: 5 RPAGSPLSASAEPAPLAAAIRDSRPGRTGPGPAGP---------GGGSRSGSGRPAAANA 55
RPA P + A PAP + +R + P R G S S RP A A
Sbjct: 162 RPA--PSAPPAPPAPPESTVRPAPPTRPGESSYSSISHVIYNNHQDSSASPRKRPGEATA 219
Query: 56 A-----------------RERSRVQTLRHAFLELQRTLPSVPPDTKLSKLDVLLLATTYI 98
A RER+RV T+ AF L++ +P KLSKL +L +A YI
Sbjct: 220 ASSEIKALQQTRRLLANARERTRVHTISAAFEALRKQVPCYSYGQKLSKLAILRIACNYI 279
Query: 99 AHLTRSLQDDAEA 111
L R D A
Sbjct: 280 LSLARLADLDYSA 292
>gi|4885619 T-cell acute lymphocytic leukemia 2 [Homo sapiens]
Length = 108
Score = 44.7 bits (104), Expect = 4e-05
Identities = 23/53 (43%), Positives = 33/53 (62%)
Query: 57 RERSRVQTLRHAFLELQRTLPSVPPDTKLSKLDVLLLATTYIAHLTRSLQDDA 109
RER R Q + AF +L++ +P+ PPD KLSK + L LA YI L + L + +
Sbjct: 10 RERWRQQNVNSAFAKLRKLIPTHPPDKKLSKNETLRLAMRYINFLVKVLGEQS 62
>gi|237757328 oligodendrocyte transcription factor 1 [Homo sapiens]
Length = 271
Score = 44.3 bits (103), Expect = 5e-05
Identities = 42/119 (35%), Positives = 52/119 (43%), Gaps = 21/119 (17%)
Query: 9 SPLSASAEPAPLAAAIRDSRPGRTG--PGPAGPGGGSR-SGSGRPAAANA---------- 55
S S+S+ APL +P PGP GPG G+ GS RP A
Sbjct: 53 SSTSSSSTTAPLLPKAAREKPEAPAEPPGP-GPGSGAHPGGSARPDAKEEQQQQLRRKIN 111
Query: 56 ARERSRVQTLRHAFLELQRTLPSVP-------PDTKLSKLDVLLLATTYIAHLTRSLQD 107
+RER R+Q L A L+ + P KLSK+ LLLA YI L SLQ+
Sbjct: 112 SRERKRMQDLNLAMDALREVILPYSAAHCQGAPGRKLSKIATLLLARNYILLLGSSLQE 170
>gi|207452735 epiplakin 1 [Homo sapiens]
Length = 5090
Score = 43.9 bits (102), Expect = 6e-05
Identities = 42/112 (37%), Positives = 57/112 (50%), Gaps = 18/112 (16%)
Query: 15 AEPAPLAAA-IRDSRPGRTGPGPAGPGGGS-----RSGSG----RPAAANAARERSRVQT 64
AE AP A ++D+R G PGPAG G G R G G + AAA AA R + QT
Sbjct: 2578 AEEAPGARPQLQDARRGPREPGPAGRGDGDSGRSQREGQGEGETQEAAAAAAAARRQEQT 2637
Query: 65 LRHAFLELQRTLPSVPPDTKLSKLDVLLLATTYIAHLTRSLQDDAEAPADAG 116
LR A +E+QR P +S DVL + ++L+ + +D+ A AG
Sbjct: 2638 LRDATMEVQRGQFQGRP---VSVWDVL-----FSSYLSEARRDELLAQHAAG 2681
Score = 40.8 bits (94), Expect = 5e-04
Identities = 41/112 (36%), Positives = 56/112 (50%), Gaps = 18/112 (16%)
Query: 15 AEPAPLAAA-IRDSRPGRTGPGPAGPGGGS-----RSGSG----RPAAANAARERSRVQT 64
AE AP A ++D+ G PGPAG G G R G G + AAA AA R + QT
Sbjct: 3112 AEEAPGARPQLQDAWRGPREPGPAGRGDGDSGRSQREGQGEGETQEAAAAAAAARRQEQT 3171
Query: 65 LRHAFLELQRTLPSVPPDTKLSKLDVLLLATTYIAHLTRSLQDDAEAPADAG 116
LR A +E+QR P +S DVL + ++L+ + +D+ A AG
Sbjct: 3172 LRDATMEVQRGQFQGRP---VSVWDVL-----FSSYLSEARRDELLAQHAAG 3215
Score = 40.8 bits (94), Expect = 5e-04
Identities = 41/112 (36%), Positives = 56/112 (50%), Gaps = 18/112 (16%)
Query: 15 AEPAPLAAA-IRDSRPGRTGPGPAGPGGGS-----RSGSG----RPAAANAARERSRVQT 64
AE AP A ++D+ G PGPAG G G R G G + AAA AA R + QT
Sbjct: 3646 AEEAPGARPQLQDAWRGPREPGPAGRGDGDSGRSQREGQGEGETQEAAAAAAAARRQEQT 3705
Query: 65 LRHAFLELQRTLPSVPPDTKLSKLDVLLLATTYIAHLTRSLQDDAEAPADAG 116
LR A +E+QR P +S DVL + ++L+ + +D+ A AG
Sbjct: 3706 LRDATMEVQRGQFQGRP---VSVWDVL-----FSSYLSEARRDELLAQHAAG 3749
Score = 40.8 bits (94), Expect = 5e-04
Identities = 41/112 (36%), Positives = 56/112 (50%), Gaps = 18/112 (16%)
Query: 15 AEPAPLAAA-IRDSRPGRTGPGPAGPGGGS-----RSGSG----RPAAANAARERSRVQT 64
AE AP A ++D+ G PGPAG G G R G G + AAA AA R + QT
Sbjct: 4714 AEEAPGARPQLQDAWRGPREPGPAGRGDGDSGRSQREGQGEGETQEAAAAAAAARRQEQT 4773
Query: 65 LRHAFLELQRTLPSVPPDTKLSKLDVLLLATTYIAHLTRSLQDDAEAPADAG 116
LR A +E+QR P +S DVL + ++L+ + +D+ A AG
Sbjct: 4774 LRDATMEVQRGQFQGRP---VSVWDVL-----FSSYLSEARRDELLAQHAAG 4817
Score = 39.3 bits (90), Expect = 0.002
Identities = 40/112 (35%), Positives = 55/112 (49%), Gaps = 18/112 (16%)
Query: 15 AEPAPLAAA-IRDSRPGRTGPGPAGPGGGS-----RSGSG----RPAAANAARERSRVQT 64
AE AP A ++D+ G PGPAG G G R G G + AAA A R + QT
Sbjct: 4180 AEEAPGARPQLQDAWRGPREPGPAGRGDGDSGRSQREGQGEGETQEAAAATAAARRQEQT 4239
Query: 65 LRHAFLELQRTLPSVPPDTKLSKLDVLLLATTYIAHLTRSLQDDAEAPADAG 116
LR A +E+QR P +S DVL + ++L+ + +D+ A AG
Sbjct: 4240 LRDATMEVQRGQFQGRP---VSVWDVL-----FSSYLSEARRDELLAQHAAG 4283
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.313 0.131 0.387
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,035,901
Number of Sequences: 37866
Number of extensions: 464383
Number of successful extensions: 5005
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 238
Number of HSP's successfully gapped in prelim test: 369
Number of HSP's that attempted gapping in prelim test: 3978
Number of HSP's gapped (non-prelim): 1294
length of query: 167
length of database: 18,247,518
effective HSP length: 95
effective length of query: 72
effective length of database: 14,650,248
effective search space: 1054817856
effective search space used: 1054817856
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.