BLASTP 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|239748897 PREDICTED: hypothetical protein XP_002346887 [Homo sapiens] (105 letters) Database: hs.faa 37,866 sequences; 18,247,518 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|239754349 PREDICTED: hypothetical protein [Homo sapiens] 233 3e-62 gi|239748897 PREDICTED: hypothetical protein XP_002346887 [Homo ... 233 3e-62 gi|239742921 PREDICTED: hypothetical protein XP_002342685 [Homo ... 230 2e-61 gi|4507831 Unc-51-like kinase 1 [Homo sapiens] 32 0.082 gi|5031855 lymphocyte cytosolic protein 2 [Homo sapiens] 32 0.082 gi|4502027 albumin preproprotein [Homo sapiens] 32 0.11 gi|5174467 heparan sulfate D-glucosaminyl 3-O-sulfotransferase 3... 32 0.14 gi|4501913 ADAM metallopeptidase domain 23 preproprotein [Homo s... 31 0.24 gi|169658367 BAH domain and coiled-coil containing 1 [Homo sapiens] 30 0.31 gi|209862782 hypothetical protein LOC730130 [Homo sapiens] 30 0.41 gi|13375756 occludin/ELL domain containing 1 [Homo sapiens] 30 0.41 gi|194248077 Kruppel-like factor 4 (gut) [Homo sapiens] 30 0.53 gi|239756935 PREDICTED: hypothetical protein XP_002345110 [Homo ... 29 0.69 gi|239751447 PREDICTED: hypothetical protein XP_002347851 [Homo ... 29 0.69 gi|239745952 PREDICTED: hypothetical protein XP_002343584 [Homo ... 29 0.69 gi|65506328 protein phosphatase 1J (PP2C domain containing) [Hom... 29 0.69 gi|4503041 corticotropin releasing hormone precursor [Homo sapiens] 29 0.90 gi|154759423 Cdk5 and Abl enzyme substrate 1 isoform 2 [Homo sap... 29 0.90 gi|41282051 pyrin and HIN domain family, member 1 beta 2 isoform... 29 0.90 gi|41282056 pyrin and HIN domain family, member 1 beta 1 isoform... 29 0.90 gi|41282048 pyrin and HIN domain family, member 1 alpha 2 isofor... 29 0.90 gi|39540514 pyrin and HIN domain family, member 1 alpha 1 isofor... 29 0.90 gi|115387114 islet-1 [Homo sapiens] 29 0.90 gi|84993742 tripartite motif-containing 71 [Homo sapiens] 29 0.90 gi|185135971 poly(A)-binding protein, cytoplasmic 1-like [Homo s... 28 1.2 gi|239756545 PREDICTED: hypothetical protein XP_002344931 [Homo ... 28 1.2 gi|239751065 PREDICTED: hypothetical protein XP_002347692 [Homo ... 28 1.2 gi|239745511 PREDICTED: hypothetical protein XP_002343508 [Homo ... 28 1.2 gi|224177469 SET domain, bifurcated 1 isoform 2 [Homo sapiens] 28 1.2 gi|224177467 SET domain, bifurcated 1 isoform 1 [Homo sapiens] 28 1.2 >gi|239754349 PREDICTED: hypothetical protein [Homo sapiens] Length = 105 Score = 233 bits (593), Expect = 3e-62 Identities = 105/105 (100%), Positives = 105/105 (100%) Query: 1 MTMSVKQKVKQRTGTAGAAAGCCLCRCSCSRAGHDVARPLRPAPPRLPLGALCSPPCCSN 60 MTMSVKQKVKQRTGTAGAAAGCCLCRCSCSRAGHDVARPLRPAPPRLPLGALCSPPCCSN Sbjct: 1 MTMSVKQKVKQRTGTAGAAAGCCLCRCSCSRAGHDVARPLRPAPPRLPLGALCSPPCCSN 60 Query: 61 EEPRQPAARPHWLRQRSKFHEGTPTSARGTRCCSFHFTEKNLPGD 105 EEPRQPAARPHWLRQRSKFHEGTPTSARGTRCCSFHFTEKNLPGD Sbjct: 61 EEPRQPAARPHWLRQRSKFHEGTPTSARGTRCCSFHFTEKNLPGD 105 >gi|239748897 PREDICTED: hypothetical protein XP_002346887 [Homo sapiens] Length = 105 Score = 233 bits (593), Expect = 3e-62 Identities = 105/105 (100%), Positives = 105/105 (100%) Query: 1 MTMSVKQKVKQRTGTAGAAAGCCLCRCSCSRAGHDVARPLRPAPPRLPLGALCSPPCCSN 60 MTMSVKQKVKQRTGTAGAAAGCCLCRCSCSRAGHDVARPLRPAPPRLPLGALCSPPCCSN Sbjct: 1 MTMSVKQKVKQRTGTAGAAAGCCLCRCSCSRAGHDVARPLRPAPPRLPLGALCSPPCCSN 60 Query: 61 EEPRQPAARPHWLRQRSKFHEGTPTSARGTRCCSFHFTEKNLPGD 105 EEPRQPAARPHWLRQRSKFHEGTPTSARGTRCCSFHFTEKNLPGD Sbjct: 61 EEPRQPAARPHWLRQRSKFHEGTPTSARGTRCCSFHFTEKNLPGD 105 >gi|239742921 PREDICTED: hypothetical protein XP_002342685 [Homo sapiens] Length = 105 Score = 230 bits (586), Expect = 2e-61 Identities = 104/105 (99%), Positives = 104/105 (99%) Query: 1 MTMSVKQKVKQRTGTAGAAAGCCLCRCSCSRAGHDVARPLRPAPPRLPLGALCSPPCCSN 60 MTMSVKQKVKQRTGTAGAAAGCCLC CSCSRAGHDVARPLRPAPPRLPLGALCSPPCCSN Sbjct: 1 MTMSVKQKVKQRTGTAGAAAGCCLCLCSCSRAGHDVARPLRPAPPRLPLGALCSPPCCSN 60 Query: 61 EEPRQPAARPHWLRQRSKFHEGTPTSARGTRCCSFHFTEKNLPGD 105 EEPRQPAARPHWLRQRSKFHEGTPTSARGTRCCSFHFTEKNLPGD Sbjct: 61 EEPRQPAARPHWLRQRSKFHEGTPTSARGTRCCSFHFTEKNLPGD 105 >gi|4507831 Unc-51-like kinase 1 [Homo sapiens] Length = 1050 Score = 32.3 bits (72), Expect = 0.082 Identities = 15/28 (53%), Positives = 17/28 (60%) Query: 36 VARPLRPAPPRLPLGALCSPPCCSNEEP 63 V RP P PP PLGA+ SPP S +P Sbjct: 565 VVRPKLPKPPTDPLGAVFSPPQASPPQP 592 >gi|5031855 lymphocyte cytosolic protein 2 [Homo sapiens] Length = 533 Score = 32.3 bits (72), Expect = 0.082 Identities = 15/40 (37%), Positives = 19/40 (47%) Query: 42 PAPPRLPLGALCSPPCCSNEEPRQPAARPHWLRQRSKFHE 81 P PP+ P+ AL PP N P P H RS+ H+ Sbjct: 187 PVPPQRPMAALPPPPAGRNHSPLPPPQTNHEEPSRSRNHK 226 >gi|4502027 albumin preproprotein [Homo sapiens] Length = 609 Score = 32.0 bits (71), Expect = 0.11 Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 3/49 (6%) Query: 49 LGALCSPPCCSNEEPRQPAARPHW---LRQRSKFHEGTPTSARGTRCCS 94 LG + S C E R P A + L Q HE TP S R T+CC+ Sbjct: 454 LGKVGSKCCKHPEAKRMPCAEDYLSVVLNQLCVLHEKTPVSDRVTKCCT 502 >gi|5174467 heparan sulfate D-glucosaminyl 3-O-sulfotransferase 3B1 [Homo sapiens] Length = 390 Score = 31.6 bits (70), Expect = 0.14 Identities = 24/60 (40%), Positives = 29/60 (48%), Gaps = 4/60 (6%) Query: 14 GTAGAAAGCCLCRCSCSRAGHD---VARPLRPAPPRLPLGALCSPPCCSNEEPRQPAARP 70 G+ AA G L S SRA HD +A PPRLP A + P S +E + AA P Sbjct: 53 GSCAAAPGLLLLG-SGSRAAHDPPALATAPDGTPPRLPFRAPPATPLASGKEMAEGAASP 111 >gi|4501913 ADAM metallopeptidase domain 23 preproprotein [Homo sapiens] Length = 832 Score = 30.8 bits (68), Expect = 0.24 Identities = 23/62 (37%), Positives = 26/62 (41%), Gaps = 9/62 (14%) Query: 20 AGCCLCRCSCSR----AGH-DVARPLRPAPPRLPLGALCSPPCCSNEEPRQPAA----RP 70 AGC L SC AG + P R P RL L L PP ++ PR A P Sbjct: 14 AGCSLAGASCGPQRGPAGSVPASAPARTPPCRLLLVLLLLPPLAASSRPRAWGAAAPSAP 73 Query: 71 HW 72 HW Sbjct: 74 HW 75 >gi|169658367 BAH domain and coiled-coil containing 1 [Homo sapiens] Length = 2608 Score = 30.4 bits (67), Expect = 0.31 Identities = 12/32 (37%), Positives = 15/32 (46%) Query: 39 PLRPAPPRLPLGALCSPPCCSNEEPRQPAARP 70 P P P G PPCC +P+ PA+ P Sbjct: 975 PTAPGAPSPAAGPTKLPPCCHPPDPKPPASSP 1006 >gi|209862782 hypothetical protein LOC730130 [Homo sapiens] Length = 380 Score = 30.0 bits (66), Expect = 0.41 Identities = 15/45 (33%), Positives = 19/45 (42%) Query: 30 SRAGHDVARPLRPAPPRLPLGALCSPPCCSNEEPRQPAARPHWLR 74 +R G RP P P A C P + E P + A P W+R Sbjct: 12 ARRGGAARRPGAPGGPGSEAAAGCPEPLSTAEAPAESATLPAWMR 56 >gi|13375756 occludin/ELL domain containing 1 [Homo sapiens] Length = 264 Score = 30.0 bits (66), Expect = 0.41 Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 1/41 (2%) Query: 31 RAGHDVARPLRPAPPRLPLGALCSPPCCSNEEPRQPAARPH 71 RAGHD R RP+ R PL P + E P+ +R H Sbjct: 32 RAGHDAPRRTRPS-ARKPLSCFSRRPMPTREPPKTRGSRGH 71 >gi|194248077 Kruppel-like factor 4 (gut) [Homo sapiens] Length = 479 Score = 29.6 bits (65), Expect = 0.53 Identities = 14/41 (34%), Positives = 19/41 (46%) Query: 40 LRPAPPRLPLGALCSPPCCSNEEPRQPAARPHWLRQRSKFH 80 ++P P L L P C EEP+ R W R+R+ H Sbjct: 356 MQPQVPPLHYQELMPPGSCMPEEPKPKRGRRSWPRKRTATH 396 >gi|239756935 PREDICTED: hypothetical protein XP_002345110 [Homo sapiens] Length = 237 Score = 29.3 bits (64), Expect = 0.69 Identities = 16/50 (32%), Positives = 20/50 (40%), Gaps = 5/50 (10%) Query: 23 CLCRCSCSRAGHDVARPLRPAPPRLPLGALCSPPCCSNEEPRQPAARPHW 72 CL C C A P P+P +P + C P + EP RP W Sbjct: 113 CLSACGCPSALVTPQAPAVPSPGYVPAPSFCHPHQWAASEP-----RPFW 157 >gi|239751447 PREDICTED: hypothetical protein XP_002347851 [Homo sapiens] Length = 237 Score = 29.3 bits (64), Expect = 0.69 Identities = 16/50 (32%), Positives = 20/50 (40%), Gaps = 5/50 (10%) Query: 23 CLCRCSCSRAGHDVARPLRPAPPRLPLGALCSPPCCSNEEPRQPAARPHW 72 CL C C A P P+P +P + C P + EP RP W Sbjct: 113 CLSACGCPSALVTPQAPAVPSPGYVPAPSFCHPHQWAASEP-----RPFW 157 >gi|239745952 PREDICTED: hypothetical protein XP_002343584 [Homo sapiens] Length = 237 Score = 29.3 bits (64), Expect = 0.69 Identities = 16/50 (32%), Positives = 20/50 (40%), Gaps = 5/50 (10%) Query: 23 CLCRCSCSRAGHDVARPLRPAPPRLPLGALCSPPCCSNEEPRQPAARPHW 72 CL C C A P P+P +P + C P + EP RP W Sbjct: 113 CLSACGCPSALVTPQAPAVPSPGYVPAPSFCHPHQWAASEP-----RPFW 157 >gi|65506328 protein phosphatase 1J (PP2C domain containing) [Homo sapiens] Length = 505 Score = 29.3 bits (64), Expect = 0.69 Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 1/33 (3%) Query: 37 ARPLRPAPPRLPLGALCSPPCCSNEEPRQPAAR 69 A P RP P LP A +PP + E PR P A+ Sbjct: 18 APPPRPKSPDLP-NAASAPPAAAPEAPRSPPAK 49 >gi|4503041 corticotropin releasing hormone precursor [Homo sapiens] Length = 196 Score = 28.9 bits (63), Expect = 0.90 Identities = 21/58 (36%), Positives = 26/58 (44%), Gaps = 4/58 (6%) Query: 22 CCLCRCSCSRAGHDVARPLRPAPPRLPLGALCSPPCCSNEEPRQPAARPHWLRQRSKF 79 C CR SR AR P PL PP +E+P+QP ARP LR ++ Sbjct: 19 CPPCRALLSRGPVPGARQAPQHPQ--PLDFFQPPP--QSEQPQQPQARPVLLRMGEEY 72 >gi|154759423 Cdk5 and Abl enzyme substrate 1 isoform 2 [Homo sapiens] Length = 633 Score = 28.9 bits (63), Expect = 0.90 Identities = 20/58 (34%), Positives = 23/58 (39%), Gaps = 3/58 (5%) Query: 16 AGAAAGCCLCRCSCSRAGHDVARP---LRPAPPRLPLGALCSPPCCSNEEPRQPAARP 70 A AAA CS AG D A +P P P A +P E PR+P P Sbjct: 2 AAAAAAATTAACSSGSAGTDAAGASGLQQPPPQPQPQPAAAAPAQPPPEPPRKPRMDP 59 >gi|41282051 pyrin and HIN domain family, member 1 beta 2 isoform [Homo sapiens] Length = 452 Score = 28.9 bits (63), Expect = 0.90 Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 3/76 (3%) Query: 6 KQKVKQRTGTAGAAAGCCLCRCSCSRAGHDVARPLRPAPPRLPLGALCSPPCCSNEEPRQ 65 K+ ++ TGT + R SCS AG + + +PP P + +PP S+ E + Sbjct: 131 KKPSEEETGTKRSKMSKEQTRPSCS-AGASTSTAMGRSPP--PQTSSSAPPNTSSTESLK 187 Query: 66 PAARPHWLRQRSKFHE 81 P A H ++ F E Sbjct: 188 PLANRHATASKNIFRE 203 >gi|41282056 pyrin and HIN domain family, member 1 beta 1 isoform [Homo sapiens] Length = 461 Score = 28.9 bits (63), Expect = 0.90 Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 3/76 (3%) Query: 6 KQKVKQRTGTAGAAAGCCLCRCSCSRAGHDVARPLRPAPPRLPLGALCSPPCCSNEEPRQ 65 K+ ++ TGT + R SCS AG + + +PP P + +PP S+ E + Sbjct: 140 KKPSEEETGTKRSKMSKEQTRPSCS-AGASTSTAMGRSPP--PQTSSSAPPNTSSTESLK 196 Query: 66 PAARPHWLRQRSKFHE 81 P A H ++ F E Sbjct: 197 PLANRHATASKNIFRE 212 >gi|41282048 pyrin and HIN domain family, member 1 alpha 2 isoform [Homo sapiens] Length = 483 Score = 28.9 bits (63), Expect = 0.90 Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 3/76 (3%) Query: 6 KQKVKQRTGTAGAAAGCCLCRCSCSRAGHDVARPLRPAPPRLPLGALCSPPCCSNEEPRQ 65 K+ ++ TGT + R SCS AG + + +PP P + +PP S+ E + Sbjct: 131 KKPSEEETGTKRSKMSKEQTRPSCS-AGASTSTAMGRSPP--PQTSSSAPPNTSSTESLK 187 Query: 66 PAARPHWLRQRSKFHE 81 P A H ++ F E Sbjct: 188 PLANRHATASKNIFRE 203 >gi|39540514 pyrin and HIN domain family, member 1 alpha 1 isoform [Homo sapiens] Length = 492 Score = 28.9 bits (63), Expect = 0.90 Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 3/76 (3%) Query: 6 KQKVKQRTGTAGAAAGCCLCRCSCSRAGHDVARPLRPAPPRLPLGALCSPPCCSNEEPRQ 65 K+ ++ TGT + R SCS AG + + +PP P + +PP S+ E + Sbjct: 140 KKPSEEETGTKRSKMSKEQTRPSCS-AGASTSTAMGRSPP--PQTSSSAPPNTSSTESLK 196 Query: 66 PAARPHWLRQRSKFHE 81 P A H ++ F E Sbjct: 197 PLANRHATASKNIFRE 212 >gi|115387114 islet-1 [Homo sapiens] Length = 349 Score = 28.9 bits (63), Expect = 0.90 Identities = 21/56 (37%), Positives = 22/56 (39%), Gaps = 13/56 (23%) Query: 31 RAGHDVAR--------PLRPAPPRLPLGALCSPPCCSNEEPRQPAARPHWLRQRSK 78 RA HDV PL P P PL P RQPA RPH +Q K Sbjct: 130 RADHDVVERASLGAGDPLSPLHPARPLQMAAEPISA-----RQPALRPHVHKQPEK 180 >gi|84993742 tripartite motif-containing 71 [Homo sapiens] Length = 868 Score = 28.9 bits (63), Expect = 0.90 Identities = 29/86 (33%), Positives = 31/86 (36%), Gaps = 8/86 (9%) Query: 12 RTGTAGAAAGCCLCRCSCSRAGHDVARPLRPAPPRLPLGALCSPPCCSNEEPRQPAARPH 71 + G AGA AG A H R APP L PP S P PAA P Sbjct: 133 KNGRAGAPAGAGGHSNHRHHAHHAHPRASASAPP---LPQAPQPPAPSRSAPGGPAASPS 189 Query: 72 WLRQR-----SKFHEGTPTSARGTRC 92 L R S EG S+R C Sbjct: 190 ALLLRRPHGCSSCDEGNAASSRCLDC 215 >gi|185135971 poly(A)-binding protein, cytoplasmic 1-like [Homo sapiens] Length = 614 Score = 28.5 bits (62), Expect = 1.2 Identities = 20/49 (40%), Positives = 22/49 (44%), Gaps = 10/49 (20%) Query: 11 QRTGTAGAAAGCC-----LCRCSCSRAGHDVARPLRPA---PPRLPLGA 51 Q TG +G GCC L C CS A H R PA P + PL A Sbjct: 487 QTTGPSGV--GCCTPGRPLLPCKCSSAAHSTYRVQEPAVHIPGQEPLTA 533 >gi|239756545 PREDICTED: hypothetical protein XP_002344931 [Homo sapiens] Length = 427 Score = 28.5 bits (62), Expect = 1.2 Identities = 24/62 (38%), Positives = 28/62 (45%), Gaps = 11/62 (17%) Query: 8 KVKQRTGTAGAAAGCCLCRCSCSRAGHDVARPLRPAPPRL----PLGALCSPPC-CSNEE 62 +V R G A AAA CC C C AG +P RP RL P + PC C + Sbjct: 67 RVVPRPGVARAAA-CCACAC----AGRTNRQP-RPFQARLLAAVPSASNSKTPCTCMSAS 120 Query: 63 PR 64 PR Sbjct: 121 PR 122 >gi|239751065 PREDICTED: hypothetical protein XP_002347692 [Homo sapiens] Length = 537 Score = 28.5 bits (62), Expect = 1.2 Identities = 24/62 (38%), Positives = 28/62 (45%), Gaps = 11/62 (17%) Query: 8 KVKQRTGTAGAAAGCCLCRCSCSRAGHDVARPLRPAPPRL----PLGALCSPPC-CSNEE 62 +V R G A AAA CC C C AG +P RP RL P + PC C + Sbjct: 67 RVVPRPGVARAAA-CCACAC----AGRTNRQP-RPFQARLLAAVPSASNSKTPCTCMSAS 120 Query: 63 PR 64 PR Sbjct: 121 PR 122 >gi|239745511 PREDICTED: hypothetical protein XP_002343508 [Homo sapiens] Length = 427 Score = 28.5 bits (62), Expect = 1.2 Identities = 24/62 (38%), Positives = 28/62 (45%), Gaps = 11/62 (17%) Query: 8 KVKQRTGTAGAAAGCCLCRCSCSRAGHDVARPLRPAPPRL----PLGALCSPPC-CSNEE 62 +V R G A AAA CC C C AG +P RP RL P + PC C + Sbjct: 67 RVVPRPGVARAAA-CCACAC----AGRTNRQP-RPFQARLLAAVPSASNSKTPCTCMSAS 120 Query: 63 PR 64 PR Sbjct: 121 PR 122 >gi|224177469 SET domain, bifurcated 1 isoform 2 [Homo sapiens] Length = 1290 Score = 28.5 bits (62), Expect = 1.2 Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 4/39 (10%) Query: 35 DVARPLRPAPPRLPLGALCSPPCCSNEEPRQPAARPHWL 73 D+ P P PP +P+G C+PP S E P+ A WL Sbjct: 951 DLGPPHIPVPPSIPVGG-CNPP-SSEETPKNKVA--SWL 985 >gi|224177467 SET domain, bifurcated 1 isoform 1 [Homo sapiens] Length = 1291 Score = 28.5 bits (62), Expect = 1.2 Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 4/39 (10%) Query: 35 DVARPLRPAPPRLPLGALCSPPCCSNEEPRQPAARPHWL 73 D+ P P PP +P+G C+PP S E P+ A WL Sbjct: 951 DLGPPHIPVPPSIPVGG-CNPP-SSEETPKNKVA--SWL 985 Database: hs.faa Posted date: Aug 4, 2009 4:42 PM Number of letters in database: 18,247,518 Number of sequences in database: 37,866 Lambda K H 0.322 0.134 0.463 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 5,379,184 Number of Sequences: 37866 Number of extensions: 279666 Number of successful extensions: 1480 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 49 Number of HSP's successfully gapped in prelim test: 73 Number of HSP's that attempted gapping in prelim test: 1400 Number of HSP's gapped (non-prelim): 151 length of query: 105 length of database: 18,247,518 effective HSP length: 76 effective length of query: 29 effective length of database: 15,369,702 effective search space: 445721358 effective search space used: 445721358 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.