Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Search of human proteins with 239748897

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239748897 PREDICTED: hypothetical protein XP_002346887 [Homo
sapiens]
         (105 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239754349 PREDICTED: hypothetical protein [Homo sapiens]           233   3e-62
gi|239748897 PREDICTED: hypothetical protein XP_002346887 [Homo ...   233   3e-62
gi|239742921 PREDICTED: hypothetical protein XP_002342685 [Homo ...   230   2e-61
gi|4507831 Unc-51-like kinase 1 [Homo sapiens]                         32   0.082
gi|5031855 lymphocyte cytosolic protein 2 [Homo sapiens]               32   0.082
gi|4502027 albumin preproprotein [Homo sapiens]                        32   0.11 
gi|5174467 heparan sulfate D-glucosaminyl 3-O-sulfotransferase 3...    32   0.14 
gi|4501913 ADAM metallopeptidase domain 23 preproprotein [Homo s...    31   0.24 
gi|169658367 BAH domain and coiled-coil containing 1 [Homo sapiens]    30   0.31 
gi|209862782 hypothetical protein LOC730130 [Homo sapiens]             30   0.41 
gi|13375756 occludin/ELL domain containing 1 [Homo sapiens]            30   0.41 
gi|194248077 Kruppel-like factor 4 (gut) [Homo sapiens]                30   0.53 
gi|239756935 PREDICTED: hypothetical protein XP_002345110 [Homo ...    29   0.69 
gi|239751447 PREDICTED: hypothetical protein XP_002347851 [Homo ...    29   0.69 
gi|239745952 PREDICTED: hypothetical protein XP_002343584 [Homo ...    29   0.69 
gi|65506328 protein phosphatase 1J (PP2C domain containing) [Hom...    29   0.69 
gi|4503041 corticotropin releasing hormone precursor [Homo sapiens]    29   0.90 
gi|154759423 Cdk5 and Abl enzyme substrate 1 isoform 2 [Homo sap...    29   0.90 
gi|41282051 pyrin and HIN domain family, member 1 beta 2 isoform...    29   0.90 
gi|41282056 pyrin and HIN domain family, member 1 beta 1 isoform...    29   0.90 
gi|41282048 pyrin and HIN domain family, member 1 alpha 2 isofor...    29   0.90 
gi|39540514 pyrin and HIN domain family, member 1 alpha 1 isofor...    29   0.90 
gi|115387114 islet-1 [Homo sapiens]                                    29   0.90 
gi|84993742 tripartite motif-containing 71 [Homo sapiens]              29   0.90 
gi|185135971 poly(A)-binding protein, cytoplasmic 1-like [Homo s...    28   1.2  
gi|239756545 PREDICTED: hypothetical protein XP_002344931 [Homo ...    28   1.2  
gi|239751065 PREDICTED: hypothetical protein XP_002347692 [Homo ...    28   1.2  
gi|239745511 PREDICTED: hypothetical protein XP_002343508 [Homo ...    28   1.2  
gi|224177469 SET domain, bifurcated 1 isoform 2 [Homo sapiens]         28   1.2  
gi|224177467 SET domain, bifurcated 1 isoform 1 [Homo sapiens]         28   1.2  

>gi|239754349 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 105

 Score =  233 bits (593), Expect = 3e-62
 Identities = 105/105 (100%), Positives = 105/105 (100%)

Query: 1   MTMSVKQKVKQRTGTAGAAAGCCLCRCSCSRAGHDVARPLRPAPPRLPLGALCSPPCCSN 60
           MTMSVKQKVKQRTGTAGAAAGCCLCRCSCSRAGHDVARPLRPAPPRLPLGALCSPPCCSN
Sbjct: 1   MTMSVKQKVKQRTGTAGAAAGCCLCRCSCSRAGHDVARPLRPAPPRLPLGALCSPPCCSN 60

Query: 61  EEPRQPAARPHWLRQRSKFHEGTPTSARGTRCCSFHFTEKNLPGD 105
           EEPRQPAARPHWLRQRSKFHEGTPTSARGTRCCSFHFTEKNLPGD
Sbjct: 61  EEPRQPAARPHWLRQRSKFHEGTPTSARGTRCCSFHFTEKNLPGD 105


>gi|239748897 PREDICTED: hypothetical protein XP_002346887 [Homo
           sapiens]
          Length = 105

 Score =  233 bits (593), Expect = 3e-62
 Identities = 105/105 (100%), Positives = 105/105 (100%)

Query: 1   MTMSVKQKVKQRTGTAGAAAGCCLCRCSCSRAGHDVARPLRPAPPRLPLGALCSPPCCSN 60
           MTMSVKQKVKQRTGTAGAAAGCCLCRCSCSRAGHDVARPLRPAPPRLPLGALCSPPCCSN
Sbjct: 1   MTMSVKQKVKQRTGTAGAAAGCCLCRCSCSRAGHDVARPLRPAPPRLPLGALCSPPCCSN 60

Query: 61  EEPRQPAARPHWLRQRSKFHEGTPTSARGTRCCSFHFTEKNLPGD 105
           EEPRQPAARPHWLRQRSKFHEGTPTSARGTRCCSFHFTEKNLPGD
Sbjct: 61  EEPRQPAARPHWLRQRSKFHEGTPTSARGTRCCSFHFTEKNLPGD 105


>gi|239742921 PREDICTED: hypothetical protein XP_002342685 [Homo
           sapiens]
          Length = 105

 Score =  230 bits (586), Expect = 2e-61
 Identities = 104/105 (99%), Positives = 104/105 (99%)

Query: 1   MTMSVKQKVKQRTGTAGAAAGCCLCRCSCSRAGHDVARPLRPAPPRLPLGALCSPPCCSN 60
           MTMSVKQKVKQRTGTAGAAAGCCLC CSCSRAGHDVARPLRPAPPRLPLGALCSPPCCSN
Sbjct: 1   MTMSVKQKVKQRTGTAGAAAGCCLCLCSCSRAGHDVARPLRPAPPRLPLGALCSPPCCSN 60

Query: 61  EEPRQPAARPHWLRQRSKFHEGTPTSARGTRCCSFHFTEKNLPGD 105
           EEPRQPAARPHWLRQRSKFHEGTPTSARGTRCCSFHFTEKNLPGD
Sbjct: 61  EEPRQPAARPHWLRQRSKFHEGTPTSARGTRCCSFHFTEKNLPGD 105


>gi|4507831 Unc-51-like kinase 1 [Homo sapiens]
          Length = 1050

 Score = 32.3 bits (72), Expect = 0.082
 Identities = 15/28 (53%), Positives = 17/28 (60%)

Query: 36  VARPLRPAPPRLPLGALCSPPCCSNEEP 63
           V RP  P PP  PLGA+ SPP  S  +P
Sbjct: 565 VVRPKLPKPPTDPLGAVFSPPQASPPQP 592


>gi|5031855 lymphocyte cytosolic protein 2 [Homo sapiens]
          Length = 533

 Score = 32.3 bits (72), Expect = 0.082
 Identities = 15/40 (37%), Positives = 19/40 (47%)

Query: 42  PAPPRLPLGALCSPPCCSNEEPRQPAARPHWLRQRSKFHE 81
           P PP+ P+ AL  PP   N  P  P    H    RS+ H+
Sbjct: 187 PVPPQRPMAALPPPPAGRNHSPLPPPQTNHEEPSRSRNHK 226


>gi|4502027 albumin preproprotein [Homo sapiens]
          Length = 609

 Score = 32.0 bits (71), Expect = 0.11
 Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 3/49 (6%)

Query: 49  LGALCSPPCCSNEEPRQPAARPHW---LRQRSKFHEGTPTSARGTRCCS 94
           LG + S  C   E  R P A  +    L Q    HE TP S R T+CC+
Sbjct: 454 LGKVGSKCCKHPEAKRMPCAEDYLSVVLNQLCVLHEKTPVSDRVTKCCT 502


>gi|5174467 heparan sulfate D-glucosaminyl 3-O-sulfotransferase 3B1
           [Homo sapiens]
          Length = 390

 Score = 31.6 bits (70), Expect = 0.14
 Identities = 24/60 (40%), Positives = 29/60 (48%), Gaps = 4/60 (6%)

Query: 14  GTAGAAAGCCLCRCSCSRAGHD---VARPLRPAPPRLPLGALCSPPCCSNEEPRQPAARP 70
           G+  AA G  L   S SRA HD   +A      PPRLP  A  + P  S +E  + AA P
Sbjct: 53  GSCAAAPGLLLLG-SGSRAAHDPPALATAPDGTPPRLPFRAPPATPLASGKEMAEGAASP 111


>gi|4501913 ADAM metallopeptidase domain 23 preproprotein [Homo
          sapiens]
          Length = 832

 Score = 30.8 bits (68), Expect = 0.24
 Identities = 23/62 (37%), Positives = 26/62 (41%), Gaps = 9/62 (14%)

Query: 20 AGCCLCRCSCSR----AGH-DVARPLRPAPPRLPLGALCSPPCCSNEEPRQPAA----RP 70
          AGC L   SC      AG    + P R  P RL L  L  PP  ++  PR   A     P
Sbjct: 14 AGCSLAGASCGPQRGPAGSVPASAPARTPPCRLLLVLLLLPPLAASSRPRAWGAAAPSAP 73

Query: 71 HW 72
          HW
Sbjct: 74 HW 75


>gi|169658367 BAH domain and coiled-coil containing 1 [Homo sapiens]
          Length = 2608

 Score = 30.4 bits (67), Expect = 0.31
 Identities = 12/32 (37%), Positives = 15/32 (46%)

Query: 39   PLRPAPPRLPLGALCSPPCCSNEEPRQPAARP 70
            P  P  P    G    PPCC   +P+ PA+ P
Sbjct: 975  PTAPGAPSPAAGPTKLPPCCHPPDPKPPASSP 1006


>gi|209862782 hypothetical protein LOC730130 [Homo sapiens]
          Length = 380

 Score = 30.0 bits (66), Expect = 0.41
 Identities = 15/45 (33%), Positives = 19/45 (42%)

Query: 30 SRAGHDVARPLRPAPPRLPLGALCSPPCCSNEEPRQPAARPHWLR 74
          +R G    RP  P  P     A C  P  + E P + A  P W+R
Sbjct: 12 ARRGGAARRPGAPGGPGSEAAAGCPEPLSTAEAPAESATLPAWMR 56


>gi|13375756 occludin/ELL domain containing 1 [Homo sapiens]
          Length = 264

 Score = 30.0 bits (66), Expect = 0.41
 Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 1/41 (2%)

Query: 31 RAGHDVARPLRPAPPRLPLGALCSPPCCSNEEPRQPAARPH 71
          RAGHD  R  RP+  R PL      P  + E P+   +R H
Sbjct: 32 RAGHDAPRRTRPS-ARKPLSCFSRRPMPTREPPKTRGSRGH 71


>gi|194248077 Kruppel-like factor 4 (gut) [Homo sapiens]
          Length = 479

 Score = 29.6 bits (65), Expect = 0.53
 Identities = 14/41 (34%), Positives = 19/41 (46%)

Query: 40  LRPAPPRLPLGALCSPPCCSNEEPRQPAARPHWLRQRSKFH 80
           ++P  P L    L  P  C  EEP+    R  W R+R+  H
Sbjct: 356 MQPQVPPLHYQELMPPGSCMPEEPKPKRGRRSWPRKRTATH 396


>gi|239756935 PREDICTED: hypothetical protein XP_002345110 [Homo
           sapiens]
          Length = 237

 Score = 29.3 bits (64), Expect = 0.69
 Identities = 16/50 (32%), Positives = 20/50 (40%), Gaps = 5/50 (10%)

Query: 23  CLCRCSCSRAGHDVARPLRPAPPRLPLGALCSPPCCSNEEPRQPAARPHW 72
           CL  C C  A      P  P+P  +P  + C P   +  EP     RP W
Sbjct: 113 CLSACGCPSALVTPQAPAVPSPGYVPAPSFCHPHQWAASEP-----RPFW 157


>gi|239751447 PREDICTED: hypothetical protein XP_002347851 [Homo
           sapiens]
          Length = 237

 Score = 29.3 bits (64), Expect = 0.69
 Identities = 16/50 (32%), Positives = 20/50 (40%), Gaps = 5/50 (10%)

Query: 23  CLCRCSCSRAGHDVARPLRPAPPRLPLGALCSPPCCSNEEPRQPAARPHW 72
           CL  C C  A      P  P+P  +P  + C P   +  EP     RP W
Sbjct: 113 CLSACGCPSALVTPQAPAVPSPGYVPAPSFCHPHQWAASEP-----RPFW 157


>gi|239745952 PREDICTED: hypothetical protein XP_002343584 [Homo
           sapiens]
          Length = 237

 Score = 29.3 bits (64), Expect = 0.69
 Identities = 16/50 (32%), Positives = 20/50 (40%), Gaps = 5/50 (10%)

Query: 23  CLCRCSCSRAGHDVARPLRPAPPRLPLGALCSPPCCSNEEPRQPAARPHW 72
           CL  C C  A      P  P+P  +P  + C P   +  EP     RP W
Sbjct: 113 CLSACGCPSALVTPQAPAVPSPGYVPAPSFCHPHQWAASEP-----RPFW 157


>gi|65506328 protein phosphatase 1J (PP2C domain containing) [Homo
          sapiens]
          Length = 505

 Score = 29.3 bits (64), Expect = 0.69
 Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 1/33 (3%)

Query: 37 ARPLRPAPPRLPLGALCSPPCCSNEEPRQPAAR 69
          A P RP  P LP  A  +PP  + E PR P A+
Sbjct: 18 APPPRPKSPDLP-NAASAPPAAAPEAPRSPPAK 49


>gi|4503041 corticotropin releasing hormone precursor [Homo
          sapiens]
          Length = 196

 Score = 28.9 bits (63), Expect = 0.90
 Identities = 21/58 (36%), Positives = 26/58 (44%), Gaps = 4/58 (6%)

Query: 22 CCLCRCSCSRAGHDVARPLRPAPPRLPLGALCSPPCCSNEEPRQPAARPHWLRQRSKF 79
          C  CR   SR     AR     P   PL     PP   +E+P+QP ARP  LR   ++
Sbjct: 19 CPPCRALLSRGPVPGARQAPQHPQ--PLDFFQPPP--QSEQPQQPQARPVLLRMGEEY 72


>gi|154759423 Cdk5 and Abl enzyme substrate 1 isoform 2 [Homo
          sapiens]
          Length = 633

 Score = 28.9 bits (63), Expect = 0.90
 Identities = 20/58 (34%), Positives = 23/58 (39%), Gaps = 3/58 (5%)

Query: 16 AGAAAGCCLCRCSCSRAGHDVARP---LRPAPPRLPLGALCSPPCCSNEEPRQPAARP 70
          A AAA      CS   AG D A      +P P   P  A  +P     E PR+P   P
Sbjct: 2  AAAAAAATTAACSSGSAGTDAAGASGLQQPPPQPQPQPAAAAPAQPPPEPPRKPRMDP 59


>gi|41282051 pyrin and HIN domain family, member 1 beta 2 isoform
           [Homo sapiens]
          Length = 452

 Score = 28.9 bits (63), Expect = 0.90
 Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 3/76 (3%)

Query: 6   KQKVKQRTGTAGAAAGCCLCRCSCSRAGHDVARPLRPAPPRLPLGALCSPPCCSNEEPRQ 65
           K+  ++ TGT  +       R SCS AG   +  +  +PP  P  +  +PP  S+ E  +
Sbjct: 131 KKPSEEETGTKRSKMSKEQTRPSCS-AGASTSTAMGRSPP--PQTSSSAPPNTSSTESLK 187

Query: 66  PAARPHWLRQRSKFHE 81
           P A  H    ++ F E
Sbjct: 188 PLANRHATASKNIFRE 203


>gi|41282056 pyrin and HIN domain family, member 1 beta 1 isoform
           [Homo sapiens]
          Length = 461

 Score = 28.9 bits (63), Expect = 0.90
 Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 3/76 (3%)

Query: 6   KQKVKQRTGTAGAAAGCCLCRCSCSRAGHDVARPLRPAPPRLPLGALCSPPCCSNEEPRQ 65
           K+  ++ TGT  +       R SCS AG   +  +  +PP  P  +  +PP  S+ E  +
Sbjct: 140 KKPSEEETGTKRSKMSKEQTRPSCS-AGASTSTAMGRSPP--PQTSSSAPPNTSSTESLK 196

Query: 66  PAARPHWLRQRSKFHE 81
           P A  H    ++ F E
Sbjct: 197 PLANRHATASKNIFRE 212


>gi|41282048 pyrin and HIN domain family, member 1 alpha 2 isoform
           [Homo sapiens]
          Length = 483

 Score = 28.9 bits (63), Expect = 0.90
 Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 3/76 (3%)

Query: 6   KQKVKQRTGTAGAAAGCCLCRCSCSRAGHDVARPLRPAPPRLPLGALCSPPCCSNEEPRQ 65
           K+  ++ TGT  +       R SCS AG   +  +  +PP  P  +  +PP  S+ E  +
Sbjct: 131 KKPSEEETGTKRSKMSKEQTRPSCS-AGASTSTAMGRSPP--PQTSSSAPPNTSSTESLK 187

Query: 66  PAARPHWLRQRSKFHE 81
           P A  H    ++ F E
Sbjct: 188 PLANRHATASKNIFRE 203


>gi|39540514 pyrin and HIN domain family, member 1 alpha 1 isoform
           [Homo sapiens]
          Length = 492

 Score = 28.9 bits (63), Expect = 0.90
 Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 3/76 (3%)

Query: 6   KQKVKQRTGTAGAAAGCCLCRCSCSRAGHDVARPLRPAPPRLPLGALCSPPCCSNEEPRQ 65
           K+  ++ TGT  +       R SCS AG   +  +  +PP  P  +  +PP  S+ E  +
Sbjct: 140 KKPSEEETGTKRSKMSKEQTRPSCS-AGASTSTAMGRSPP--PQTSSSAPPNTSSTESLK 196

Query: 66  PAARPHWLRQRSKFHE 81
           P A  H    ++ F E
Sbjct: 197 PLANRHATASKNIFRE 212


>gi|115387114 islet-1 [Homo sapiens]
          Length = 349

 Score = 28.9 bits (63), Expect = 0.90
 Identities = 21/56 (37%), Positives = 22/56 (39%), Gaps = 13/56 (23%)

Query: 31  RAGHDVAR--------PLRPAPPRLPLGALCSPPCCSNEEPRQPAARPHWLRQRSK 78
           RA HDV          PL P  P  PL     P        RQPA RPH  +Q  K
Sbjct: 130 RADHDVVERASLGAGDPLSPLHPARPLQMAAEPISA-----RQPALRPHVHKQPEK 180


>gi|84993742 tripartite motif-containing 71 [Homo sapiens]
          Length = 868

 Score = 28.9 bits (63), Expect = 0.90
 Identities = 29/86 (33%), Positives = 31/86 (36%), Gaps = 8/86 (9%)

Query: 12  RTGTAGAAAGCCLCRCSCSRAGHDVARPLRPAPPRLPLGALCSPPCCSNEEPRQPAARPH 71
           + G AGA AG          A H   R    APP   L     PP  S   P  PAA P 
Sbjct: 133 KNGRAGAPAGAGGHSNHRHHAHHAHPRASASAPP---LPQAPQPPAPSRSAPGGPAASPS 189

Query: 72  WLRQR-----SKFHEGTPTSARGTRC 92
            L  R     S   EG   S+R   C
Sbjct: 190 ALLLRRPHGCSSCDEGNAASSRCLDC 215


>gi|185135971 poly(A)-binding protein, cytoplasmic 1-like [Homo
           sapiens]
          Length = 614

 Score = 28.5 bits (62), Expect = 1.2
 Identities = 20/49 (40%), Positives = 22/49 (44%), Gaps = 10/49 (20%)

Query: 11  QRTGTAGAAAGCC-----LCRCSCSRAGHDVARPLRPA---PPRLPLGA 51
           Q TG +G   GCC     L  C CS A H   R   PA   P + PL A
Sbjct: 487 QTTGPSGV--GCCTPGRPLLPCKCSSAAHSTYRVQEPAVHIPGQEPLTA 533


>gi|239756545 PREDICTED: hypothetical protein XP_002344931 [Homo
           sapiens]
          Length = 427

 Score = 28.5 bits (62), Expect = 1.2
 Identities = 24/62 (38%), Positives = 28/62 (45%), Gaps = 11/62 (17%)

Query: 8   KVKQRTGTAGAAAGCCLCRCSCSRAGHDVARPLRPAPPRL----PLGALCSPPC-CSNEE 62
           +V  R G A AAA CC C C    AG    +P RP   RL    P  +    PC C +  
Sbjct: 67  RVVPRPGVARAAA-CCACAC----AGRTNRQP-RPFQARLLAAVPSASNSKTPCTCMSAS 120

Query: 63  PR 64
           PR
Sbjct: 121 PR 122


>gi|239751065 PREDICTED: hypothetical protein XP_002347692 [Homo
           sapiens]
          Length = 537

 Score = 28.5 bits (62), Expect = 1.2
 Identities = 24/62 (38%), Positives = 28/62 (45%), Gaps = 11/62 (17%)

Query: 8   KVKQRTGTAGAAAGCCLCRCSCSRAGHDVARPLRPAPPRL----PLGALCSPPC-CSNEE 62
           +V  R G A AAA CC C C    AG    +P RP   RL    P  +    PC C +  
Sbjct: 67  RVVPRPGVARAAA-CCACAC----AGRTNRQP-RPFQARLLAAVPSASNSKTPCTCMSAS 120

Query: 63  PR 64
           PR
Sbjct: 121 PR 122


>gi|239745511 PREDICTED: hypothetical protein XP_002343508 [Homo
           sapiens]
          Length = 427

 Score = 28.5 bits (62), Expect = 1.2
 Identities = 24/62 (38%), Positives = 28/62 (45%), Gaps = 11/62 (17%)

Query: 8   KVKQRTGTAGAAAGCCLCRCSCSRAGHDVARPLRPAPPRL----PLGALCSPPC-CSNEE 62
           +V  R G A AAA CC C C    AG    +P RP   RL    P  +    PC C +  
Sbjct: 67  RVVPRPGVARAAA-CCACAC----AGRTNRQP-RPFQARLLAAVPSASNSKTPCTCMSAS 120

Query: 63  PR 64
           PR
Sbjct: 121 PR 122


>gi|224177469 SET domain, bifurcated 1 isoform 2 [Homo sapiens]
          Length = 1290

 Score = 28.5 bits (62), Expect = 1.2
 Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 4/39 (10%)

Query: 35  DVARPLRPAPPRLPLGALCSPPCCSNEEPRQPAARPHWL 73
           D+  P  P PP +P+G  C+PP  S E P+   A   WL
Sbjct: 951 DLGPPHIPVPPSIPVGG-CNPP-SSEETPKNKVA--SWL 985


>gi|224177467 SET domain, bifurcated 1 isoform 1 [Homo sapiens]
          Length = 1291

 Score = 28.5 bits (62), Expect = 1.2
 Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 4/39 (10%)

Query: 35  DVARPLRPAPPRLPLGALCSPPCCSNEEPRQPAARPHWL 73
           D+  P  P PP +P+G  C+PP  S E P+   A   WL
Sbjct: 951 DLGPPHIPVPPSIPVGG-CNPP-SSEETPKNKVA--SWL 985


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.322    0.134    0.463 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,379,184
Number of Sequences: 37866
Number of extensions: 279666
Number of successful extensions: 1480
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 73
Number of HSP's that attempted gapping in prelim test: 1400
Number of HSP's gapped (non-prelim): 151
length of query: 105
length of database: 18,247,518
effective HSP length: 76
effective length of query: 29
effective length of database: 15,369,702
effective search space: 445721358
effective search space used: 445721358
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press