Guide to the Human Genome
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Name: LOC100288198 Sequence: fasta or formatted (105aa) NCBI GI: 239742921
Description:

PREDICTED: hypothetical protein XP_002342685

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.5         11           3
 C cysteine            9.5         10           2
 D aspartate           1.9          2           1
 E glutamate           3.8          4           2
 F phenylalanine       2.9          3           1
 G glycine             7.6          8           1
 H histidine           3.8          4           1
 I isoleucine          0.0          0           0
 K lysine              4.8          5           1
 L leucine             7.6          8           1
 M methionine          1.9          2           1
 N asparagine          1.9          2           1
 P proline            11.4         12           2
 Q glutamine           3.8          4           1
 R arginine           10.5         11           1
 S serine              7.6          8           1
 T threonine           6.7          7           1
 V valine              2.9          3           1
 W tryptophan          1.0          1           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002342685 
LOC100294043          0.990   PREDICTED: hypothetical protein 
LOC100290645          0.990   PREDICTED: hypothetical protein XP_002346887 
HS3ST3B1              0.039   heparan sulfate D-glucosaminyl 3-O-sulfotransferase 3...
ULK1                  0.034   Unc-51-like kinase 1 
LCP2                  0.034   lymphocyte cytosolic protein 2 
ALB                   0.034   albumin preproprotein 
BAHCC1                0.024   BAH domain and coiled-coil containing 1 
ADAM23                0.024   ADAM metallopeptidase domain 23 preproprotein 
LOC730130             0.024   hypothetical protein LOC730130 
OCEL1                 0.024   occludin/ELL domain containing 1 
KLF4                  0.024   Kruppel-like factor 4 (gut) 
LOC100291925          0.019   PREDICTED: hypothetical protein XP_002345110 
LOC100291392          0.019   PREDICTED: hypothetical protein XP_002347851 
LOC100287042          0.019   PREDICTED: hypothetical protein XP_002343584 
PPM1J                 0.019   protein phosphatase 1J (PP2C domain containing) [Hom...
LOC100292095          0.019   PREDICTED: hypothetical protein XP_002345137 
LOC100131830          0.019   PREDICTED: hypothetical protein 
LOC100291303          0.019   PREDICTED: hypothetical protein XP_002347885 
LOC100131830          0.019   PREDICTED: hypothetical protein 
LOC100286950          0.019   PREDICTED: hypothetical protein XP_002344190 
LOC100131830          0.019   PREDICTED: hypothetical protein 
SPINT1                0.019   serine peptidase inhibitor, Kunitz type 1 isoform 2 ...
SPINT1                0.019   serine peptidase inhibitor, Kunitz type 1 isoform 2 p...
SPINT1                0.019   serine peptidase inhibitor, Kunitz type 1 isoform 1 ...
CABLES1               0.019   Cdk5 and Abl enzyme substrate 1 isoform 2 
ISL1                  0.019   islet-1 
GTSE1                 0.014   G-2 and S-phase expressed 1 
LOC100291743          0.014   PREDICTED: hypothetical protein XP_002344931 
LOC100289969          0.014   PREDICTED: hypothetical protein XP_002347692 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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