Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC100294043 Sequence: fasta or formatted (105aa) NCBI GI: 239754349
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.5         11           3
 C cysteine            9.5         10           2
 D aspartate           1.9          2           1
 E glutamate           3.8          4           2
 F phenylalanine       2.9          3           1
 G glycine             7.6          8           1
 H histidine           3.8          4           1
 I isoleucine          0.0          0           0
 K lysine              4.8          5           1
 L leucine             6.7          7           1
 M methionine          1.9          2           1
 N asparagine          1.9          2           1
 P proline            11.4         12           2
 Q glutamine           3.8          4           1
 R arginine           11.4         12           1
 S serine              7.6          8           1
 T threonine           6.7          7           1
 V valine              2.9          3           1
 W tryptophan          1.0          1           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100290645          1.000   PREDICTED: hypothetical protein XP_002346887 
LOC100288198          0.986   PREDICTED: hypothetical protein XP_002342685 
ULK1                  0.034   Unc-51-like kinase 1 
LCP2                  0.034   lymphocyte cytosolic protein 2 
ALB                   0.034   albumin preproprotein 
HS3ST3B1              0.034   heparan sulfate D-glucosaminyl 3-O-sulfotransferase 3...
ADAM23                0.029   ADAM metallopeptidase domain 23 preproprotein 
BAHCC1                0.024   BAH domain and coiled-coil containing 1 
LOC730130             0.024   hypothetical protein LOC730130 
OCEL1                 0.024   occludin/ELL domain containing 1 
KLF4                  0.024   Kruppel-like factor 4 (gut) 
LOC100291925          0.019   PREDICTED: hypothetical protein XP_002345110 
LOC100291392          0.019   PREDICTED: hypothetical protein XP_002347851 
LOC100287042          0.019   PREDICTED: hypothetical protein XP_002343584 
PPM1J                 0.019   protein phosphatase 1J (PP2C domain containing) [Hom...
CRH                   0.019   corticotropin releasing hormone precursor 
CABLES1               0.019   Cdk5 and Abl enzyme substrate 1 isoform 2 
PYHIN1                0.019   pyrin and HIN domain family, member 1 beta 2 isoform...
PYHIN1                0.019   pyrin and HIN domain family, member 1 beta 1 isoform...
PYHIN1                0.019   pyrin and HIN domain family, member 1 alpha 2 isofor...
PYHIN1                0.019   pyrin and HIN domain family, member 1 alpha 1 isofor...
ISL1                  0.019   islet-1 
TRIM71                0.019   tripartite motif-containing 71 
PABPC1L               0.014   poly(A)-binding protein, cytoplasmic 1-like 
LOC100291743          0.014   PREDICTED: hypothetical protein XP_002344931 
LOC100289969          0.014   PREDICTED: hypothetical protein XP_002347692 
LOC100288859          0.014   PREDICTED: hypothetical protein XP_002343508 
SETDB1                0.014   SET domain, bifurcated 1 isoform 2 
SETDB1                0.014   SET domain, bifurcated 1 isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press