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Search of human proteins with 239748599
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239748599 PREDICTED: hypothetical protein XP_002346728 [Homo
sapiens]
(285 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239748599 PREDICTED: hypothetical protein XP_002346728 [Homo ... 593 e-170
gi|239742616 PREDICTED: hypothetical protein XP_002342550 [Homo ... 593 e-170
gi|239754072 PREDICTED: hypothetical protein [Homo sapiens] 350 1e-96
gi|226498192 atonal homolog 8 [Homo sapiens] 39 0.005
gi|239754368 PREDICTED: hypothetical protein [Homo sapiens] 38 0.012
gi|239748915 PREDICTED: hypothetical protein XP_002346855 [Homo ... 38 0.012
gi|239742939 PREDICTED: hypothetical protein XP_002342693 [Homo ... 38 0.012
gi|88501738 TRIO and F-actin binding protein isoform 6 [Homo sap... 36 0.034
gi|6912492 mitogen-activated protein kinase 8 interacting protei... 36 0.034
gi|7706537 mitogen-activated protein kinase 8 interacting protei... 36 0.034
gi|73858559 proline/serine-rich coiled-coil 1 isoform c [Homo sa... 36 0.044
gi|239757128 PREDICTED: similar to mCG141871 [Homo sapiens] 35 0.058
gi|113428072 PREDICTED: similar to mCG141871 [Homo sapiens] 35 0.058
gi|73858561 proline/serine-rich coiled-coil 1 isoform a [Homo sa... 35 0.075
gi|14249168 proline/serine-rich coiled-coil 1 isoform a [Homo sa... 35 0.075
gi|68161504 Wiskott-Aldrich syndrome protein family member 1 [Ho... 35 0.098
gi|68161502 Wiskott-Aldrich syndrome protein family member 1 [Ho... 35 0.098
gi|68161500 Wiskott-Aldrich syndrome protein family member 1 [Ho... 35 0.098
gi|4507913 Wiskott-Aldrich syndrome protein family member 1 [Hom... 35 0.098
gi|33946327 nucleoporin 214kDa [Homo sapiens] 34 0.13
gi|239755710 PREDICTED: hypothetical protein [Homo sapiens] 34 0.13
gi|239752588 PREDICTED: hypothetical protein XP_002348309, parti... 34 0.17
gi|50428940 mediator complex subunit 25 [Homo sapiens] 34 0.17
gi|19111150 angiomotin isoform 2 [Homo sapiens] 33 0.22
gi|166064029 angiomotin isoform 1 [Homo sapiens] 33 0.22
gi|169172231 PREDICTED: hypothetical protein [Homo sapiens] 33 0.29
gi|169170975 PREDICTED: hypothetical protein [Homo sapiens] 33 0.29
gi|27437042 colony stimulating factor 3 receptor isoform b precu... 33 0.37
gi|116284392 mucin 2 precursor [Homo sapiens] 33 0.37
gi|169210552 PREDICTED: hypothetical protein [Homo sapiens] 32 0.49
>gi|239748599 PREDICTED: hypothetical protein XP_002346728 [Homo
sapiens]
Length = 285
Score = 593 bits (1528), Expect = e-170
Identities = 285/285 (100%), Positives = 285/285 (100%)
Query: 1 MRVPPSRDTTFGTFPPTADESQITTTIRDATAAGSPGKIGPSPFQSLSLGLAGPECPWCG 60
MRVPPSRDTTFGTFPPTADESQITTTIRDATAAGSPGKIGPSPFQSLSLGLAGPECPWCG
Sbjct: 1 MRVPPSRDTTFGTFPPTADESQITTTIRDATAAGSPGKIGPSPFQSLSLGLAGPECPWCG 60
Query: 61 VPALTAASNGHYYLADRRISESATSGYPWAPGYCTTERCKPNWSLLKASFQGAASQTQPP 120
VPALTAASNGHYYLADRRISESATSGYPWAPGYCTTERCKPNWSLLKASFQGAASQTQPP
Sbjct: 61 VPALTAASNGHYYLADRRISESATSGYPWAPGYCTTERCKPNWSLLKASFQGAASQTQPP 120
Query: 121 AISQSPGAMQIISSVLQTRVSLCGCSGHPAPASFPPLPSPSLLRPRPSSCRGRGQCWVPH 180
AISQSPGAMQIISSVLQTRVSLCGCSGHPAPASFPPLPSPSLLRPRPSSCRGRGQCWVPH
Sbjct: 121 AISQSPGAMQIISSVLQTRVSLCGCSGHPAPASFPPLPSPSLLRPRPSSCRGRGQCWVPH 180
Query: 181 AYSDRSSSSLHLLPPPAASSLFPGRARAPGRAVLRALVLSRCFPEEGLRELLEQTREREE 240
AYSDRSSSSLHLLPPPAASSLFPGRARAPGRAVLRALVLSRCFPEEGLRELLEQTREREE
Sbjct: 181 AYSDRSSSSLHLLPPPAASSLFPGRARAPGRAVLRALVLSRCFPEEGLRELLEQTREREE 240
Query: 241 GSTLKILSKVKFEACRKEEKSVEKCRYRVCGKVLHGDWLEMPFSP 285
GSTLKILSKVKFEACRKEEKSVEKCRYRVCGKVLHGDWLEMPFSP
Sbjct: 241 GSTLKILSKVKFEACRKEEKSVEKCRYRVCGKVLHGDWLEMPFSP 285
>gi|239742616 PREDICTED: hypothetical protein XP_002342550 [Homo
sapiens]
Length = 285
Score = 593 bits (1528), Expect = e-170
Identities = 285/285 (100%), Positives = 285/285 (100%)
Query: 1 MRVPPSRDTTFGTFPPTADESQITTTIRDATAAGSPGKIGPSPFQSLSLGLAGPECPWCG 60
MRVPPSRDTTFGTFPPTADESQITTTIRDATAAGSPGKIGPSPFQSLSLGLAGPECPWCG
Sbjct: 1 MRVPPSRDTTFGTFPPTADESQITTTIRDATAAGSPGKIGPSPFQSLSLGLAGPECPWCG 60
Query: 61 VPALTAASNGHYYLADRRISESATSGYPWAPGYCTTERCKPNWSLLKASFQGAASQTQPP 120
VPALTAASNGHYYLADRRISESATSGYPWAPGYCTTERCKPNWSLLKASFQGAASQTQPP
Sbjct: 61 VPALTAASNGHYYLADRRISESATSGYPWAPGYCTTERCKPNWSLLKASFQGAASQTQPP 120
Query: 121 AISQSPGAMQIISSVLQTRVSLCGCSGHPAPASFPPLPSPSLLRPRPSSCRGRGQCWVPH 180
AISQSPGAMQIISSVLQTRVSLCGCSGHPAPASFPPLPSPSLLRPRPSSCRGRGQCWVPH
Sbjct: 121 AISQSPGAMQIISSVLQTRVSLCGCSGHPAPASFPPLPSPSLLRPRPSSCRGRGQCWVPH 180
Query: 181 AYSDRSSSSLHLLPPPAASSLFPGRARAPGRAVLRALVLSRCFPEEGLRELLEQTREREE 240
AYSDRSSSSLHLLPPPAASSLFPGRARAPGRAVLRALVLSRCFPEEGLRELLEQTREREE
Sbjct: 181 AYSDRSSSSLHLLPPPAASSLFPGRARAPGRAVLRALVLSRCFPEEGLRELLEQTREREE 240
Query: 241 GSTLKILSKVKFEACRKEEKSVEKCRYRVCGKVLHGDWLEMPFSP 285
GSTLKILSKVKFEACRKEEKSVEKCRYRVCGKVLHGDWLEMPFSP
Sbjct: 241 GSTLKILSKVKFEACRKEEKSVEKCRYRVCGKVLHGDWLEMPFSP 285
>gi|239754072 PREDICTED: hypothetical protein [Homo sapiens]
Length = 379
Score = 350 bits (897), Expect = 1e-96
Identities = 179/233 (76%), Positives = 184/233 (78%), Gaps = 12/233 (5%)
Query: 54 PECPWCGVPALTAASNGHYYLADRRISESATS-GYPWAPGYCTTERCKPNWSLLKASFQG 112
P C W H ++++ S + W G C LK
Sbjct: 158 PGCRWMLFRGSLKTERQHRSFYFKKVALVIQSRSFGWQRGNC-----------LKTKLAF 206
Query: 113 AASQTQPPAISQSPGAMQIISSVLQTRVSLCGCSGHPAPASFPPLPSPSLLRPRPSSCRG 172
QTQPPAISQSPGAMQIISSVLQTRVSLCGCSGHPAPASFPPLPSPSLLRPRPSSCRG
Sbjct: 207 KKGQTQPPAISQSPGAMQIISSVLQTRVSLCGCSGHPAPASFPPLPSPSLLRPRPSSCRG 266
Query: 173 RGQCWVPHAYSDRSSSSLHLLPPPAASSLFPGRARAPGRAVLRALVLSRCFPEEGLRELL 232
RGQCWVPHAYSDRSSSSLHLLPPPAASSLFPGRARAPGRAVLRALVLS CFPEEGLRELL
Sbjct: 267 RGQCWVPHAYSDRSSSSLHLLPPPAASSLFPGRARAPGRAVLRALVLSCCFPEEGLRELL 326
Query: 233 EQTREREEGSTLKILSKVKFEACRKEEKSVEKCRYRVCGKVLHGDWLEMPFSP 285
EQTREREEGSTLKILSKVKFEACRKEEKSVEKCRYRVCGKVLHGDWLEMPFSP
Sbjct: 327 EQTREREEGSTLKILSKVKFEACRKEEKSVEKCRYRVCGKVLHGDWLEMPFSP 379
Score = 239 bits (611), Expect = 2e-63
Identities = 112/116 (96%), Positives = 113/116 (97%)
Query: 1 MRVPPSRDTTFGTFPPTADESQITTTIRDATAAGSPGKIGPSPFQSLSLGLAGPECPWCG 60
MRVPPSRDTTFGTFPPTADESQITTTIRDATAAGSPGKIGPSPFQSLSLGLAGPECPWCG
Sbjct: 1 MRVPPSRDTTFGTFPPTADESQITTTIRDATAAGSPGKIGPSPFQSLSLGLAGPECPWCG 60
Query: 61 VPALTAASNGHYYLADRRISESATSGYPWAPGYCTTERCKPNWSLLKASFQGAASQ 116
VPALTAASNGHYYLADRRISESATSGYPWAPGYCTTERCKPNWSLLKASFQ +Q
Sbjct: 61 VPALTAASNGHYYLADRRISESATSGYPWAPGYCTTERCKPNWSLLKASFQEKETQ 116
>gi|226498192 atonal homolog 8 [Homo sapiens]
Length = 321
Score = 38.9 bits (89), Expect = 0.005
Identities = 46/148 (31%), Positives = 63/148 (42%), Gaps = 28/148 (18%)
Query: 119 PPAI-SQSPG---AMQIISSVLQTRVSLCGCSGHPAPAS--FPPLPSPSLLRPRPSSCRG 172
PPA SQ+PG A L+ R+ LC PAP++ PP P S +RP P + G
Sbjct: 129 PPAPQSQAPGGPEAQPFREPGLRPRILLCAPPARPAPSAPPAPPAPPESTVRPAPPTRPG 188
Query: 173 RGQ-CWVPHA-YSDRSSSSLHLLPPPAASSLFPGRARAPGRAVLRALVLSRCFPEEGLRE 230
+ H Y++ SS A+ PG A A + ++AL + R
Sbjct: 189 ESSYSSISHVIYNNHQDSS-------ASPRKRPGEATA-ASSEIKAL--------QQTRR 232
Query: 231 LLEQTREREEGSTLKILSKVKFEACRKE 258
LL RER T+ FEA RK+
Sbjct: 233 LLANARERTRVHTI----SAAFEALRKQ 256
>gi|239754368 PREDICTED: hypothetical protein [Homo sapiens]
Length = 336
Score = 37.7 bits (86), Expect = 0.012
Identities = 32/105 (30%), Positives = 43/105 (40%), Gaps = 20/105 (19%)
Query: 116 QTQPPAISQSPGA-MQIISSVLQTRVSLCGCSGHPAPASFPPLPSPSLLRPR-------- 166
Q PP SP A M+ S L +RV+ S PP P+P+ PR
Sbjct: 151 QRMPPLPPSSPKARMERASRKLPSRVN-----------SRPPHPAPTRPTPRVQGGFGRE 199
Query: 167 PSSCRGRGQCWVPHAYSDRSSSSLHLLPPPAASSLFPGRARAPGR 211
P + G+G+ W+P S P P +L GR+R GR
Sbjct: 200 PRAAAGQGRGWLPPCRLRLQDSGPRRRPGPGPPALRSGRSRGSGR 244
>gi|239748915 PREDICTED: hypothetical protein XP_002346855 [Homo
sapiens]
Length = 336
Score = 37.7 bits (86), Expect = 0.012
Identities = 32/105 (30%), Positives = 43/105 (40%), Gaps = 20/105 (19%)
Query: 116 QTQPPAISQSPGA-MQIISSVLQTRVSLCGCSGHPAPASFPPLPSPSLLRPR-------- 166
Q PP SP A M+ S L +RV+ S PP P+P+ PR
Sbjct: 151 QRMPPLPPSSPKARMERASRKLPSRVN-----------SRPPHPAPTRPTPRVQGGFGRE 199
Query: 167 PSSCRGRGQCWVPHAYSDRSSSSLHLLPPPAASSLFPGRARAPGR 211
P + G+G+ W+P S P P +L GR+R GR
Sbjct: 200 PRAAAGQGRGWLPPCRLRLQDSGPRRRPGPGPPALRSGRSRGSGR 244
>gi|239742939 PREDICTED: hypothetical protein XP_002342693 [Homo
sapiens]
Length = 321
Score = 37.7 bits (86), Expect = 0.012
Identities = 32/105 (30%), Positives = 43/105 (40%), Gaps = 20/105 (19%)
Query: 116 QTQPPAISQSPGA-MQIISSVLQTRVSLCGCSGHPAPASFPPLPSPSLLRPR-------- 166
Q PP SP A M+ S L +RV+ S PP P+P+ PR
Sbjct: 151 QRMPPLPPSSPKARMERASRKLPSRVN-----------SRPPHPAPTRPTPRVQGGFGRE 199
Query: 167 PSSCRGRGQCWVPHAYSDRSSSSLHLLPPPAASSLFPGRARAPGR 211
P + G+G+ W+P S P P +L GR+R GR
Sbjct: 200 PRAAAGQGRGWLPPCRLRLQDSGPRRRPGPGPPALRSGRSRGSGR 244
>gi|88501738 TRIO and F-actin binding protein isoform 6 [Homo sapiens]
Length = 2365
Score = 36.2 bits (82), Expect = 0.034
Identities = 63/252 (25%), Positives = 82/252 (32%), Gaps = 56/252 (22%)
Query: 5 PSRDTTFGTFPPTADESQ------------------ITTTIRDATAAGSPGKIGPSPFQS 46
P R T F FP D S + RDA A SP + P P
Sbjct: 1076 PPRHTQFDPFPFLPDTSDAEHQCQSPQHEPLQLPAPVCIGYRDAPRASSPPRQAPEP--- 1132
Query: 47 LSLGLAGPECPWCGVPALTAASNGHYYLADRRISESATSGYPWAPGYCTTERCKPNWSLL 106
L + P +L + + + I G+ AP + + R P SL
Sbjct: 1133 ---SLLFQDLPRASTESLVPSMDSLHECP--HIPTPVCIGHRDAPSFSSPPRQAPEPSLF 1187
Query: 107 KASFQGAASQTQPPAISQSPGAMQIISSVLQTRVSLCGCSGH-PAP-ASFPPLPSPSLLR 164
G + ++ P+ G+ +I V C GH AP AS PP PS L
Sbjct: 1188 FQDPPGTSMESLAPSTDSLHGSPVLIPQV---------CIGHRDAPRASSPPRHPPSDLA 1238
Query: 165 -----PRPSSCRGRGQCWVP----HAYSDRSSSSLHLLPPPA----------ASSLFPGR 205
P P S G P H + L LPPP A GR
Sbjct: 1239 FLAPSPSPGSSGGSRGSAPPGETRHNLEREEYTVLADLPPPRRLAQRQPGPQAQCSSGGR 1298
Query: 206 ARAPGRAVLRAL 217
+PGRA + L
Sbjct: 1299 THSPGRAEVERL 1310
>gi|6912492 mitogen-activated protein kinase 8 interacting protein 2
isoform 1 [Homo sapiens]
Length = 824
Score = 36.2 bits (82), Expect = 0.034
Identities = 46/167 (27%), Positives = 67/167 (40%), Gaps = 40/167 (23%)
Query: 74 LADRRISESATSGYPWAPGYCTTERCKPNWSLLKASFQGAASQTQPPAISQSPGAMQIIS 133
L R ISE ++ PG C + +P + + GAA +Q P + PG ++++
Sbjct: 354 LVSRMISEGSSPIR--CPGQCLSPAPRPPGEPVSPA-GGAAQDSQDPEAAAGPGGVELVD 410
Query: 134 SVLQTRVSLCGCSGHPAPASFPPLPSPSLLRPRPSSCRGRGQCWVPHAYSDRSSSSLHLL 193
+LC PP P+P+ RP P+ G C S+ + +
Sbjct: 411 -----METLCA----------PPPPAPAAPRPGPAQ---PGPCLF------LSNPTRDTI 446
Query: 194 PPPAASSLFPGRARAPGRAVLRALVLSRCFPEEGLRELLEQTREREE 240
P A+ PGRA PGRA A C EE E+ E EE
Sbjct: 447 TPLWAA---PGRAARPGRACSAA-----CSEEED-----EEDDEEEE 480
Score = 28.1 bits (61), Expect = 9.2
Identities = 27/90 (30%), Positives = 36/90 (40%), Gaps = 22/90 (24%)
Query: 144 GCSGHPAPASFPPLPSPSLLRP---RPSSCR------------------GRGQCWVPHAY 182
G G APA P +PSPS+ P RP++ R R W A
Sbjct: 112 GDPGSEAPAPGPLIPSPSVEEPHKHRPTTLRLTTLGAQDSLNNNGGFDLVRPASWQETAL 171
Query: 183 SDRSSSSLHLLPPP-AASSLFPGRARAPGR 211
+ +L LP P A+ PG A++P R
Sbjct: 172 CSPAPEALRELPGPLPATDTGPGGAQSPVR 201
>gi|7706537 mitogen-activated protein kinase 8 interacting protein 2
isoform 2 [Homo sapiens]
Length = 797
Score = 36.2 bits (82), Expect = 0.034
Identities = 46/167 (27%), Positives = 67/167 (40%), Gaps = 40/167 (23%)
Query: 74 LADRRISESATSGYPWAPGYCTTERCKPNWSLLKASFQGAASQTQPPAISQSPGAMQIIS 133
L R ISE ++ PG C + +P + + GAA +Q P + PG ++++
Sbjct: 327 LVSRMISEGSSPIR--CPGQCLSPAPRPPGEPVSPA-GGAAQDSQDPEAAAGPGGVELVD 383
Query: 134 SVLQTRVSLCGCSGHPAPASFPPLPSPSLLRPRPSSCRGRGQCWVPHAYSDRSSSSLHLL 193
+LC PP P+P+ RP P+ G C S+ + +
Sbjct: 384 -----METLCA----------PPPPAPAAPRPGPAQ---PGPCLF------LSNPTRDTI 419
Query: 194 PPPAASSLFPGRARAPGRAVLRALVLSRCFPEEGLRELLEQTREREE 240
P A+ PGRA PGRA A C EE E+ E EE
Sbjct: 420 TPLWAA---PGRAARPGRACSAA-----CSEEED-----EEDDEEEE 453
Score = 28.1 bits (61), Expect = 9.2
Identities = 27/90 (30%), Positives = 36/90 (40%), Gaps = 22/90 (24%)
Query: 144 GCSGHPAPASFPPLPSPSLLRP---RPSSCR------------------GRGQCWVPHAY 182
G G APA P +PSPS+ P RP++ R R W A
Sbjct: 85 GDPGSEAPAPGPLIPSPSVEEPHKHRPTTLRLTTLGAQDSLNNNGGFDLVRPASWQETAL 144
Query: 183 SDRSSSSLHLLPPP-AASSLFPGRARAPGR 211
+ +L LP P A+ PG A++P R
Sbjct: 145 CSPAPEALRELPGPLPATDTGPGGAQSPVR 174
>gi|73858559 proline/serine-rich coiled-coil 1 isoform c [Homo
sapiens]
Length = 363
Score = 35.8 bits (81), Expect = 0.044
Identities = 38/136 (27%), Positives = 62/136 (45%), Gaps = 21/136 (15%)
Query: 97 ERCKPNWSLLKASFQGAAS---QTQPPAISQSPGAMQIISSVLQTRVSLCGCSG------ 147
+R P +L AS A+S ++ PP ++ + + +S +TR + SG
Sbjct: 172 KRESPTCNLFPASKSPASSPLTRSTPPVRGRAGPSGRAAASE-ETRAAKLRVSGSGEFVG 230
Query: 148 ------HPAPASFPPLPSPSLLRPRPSSCRGRGQCWVPHAYSDRSSSSLHL---LPPPAA 198
HP+P PP P S+L P+PS+ + + P + +SSS L + +P PA+
Sbjct: 231 LTLKFLHPSPPG-PPTPIRSVLAPQPSTSNSQ-RLPRPQGAAAKSSSQLPIPSAIPRPAS 288
Query: 199 SSLFPGRARAPGRAVL 214
R+ PGR L
Sbjct: 289 RMPLTSRSVPPGRGAL 304
>gi|239757128 PREDICTED: similar to mCG141871 [Homo sapiens]
Length = 306
Score = 35.4 bits (80), Expect = 0.058
Identities = 37/136 (27%), Positives = 45/136 (33%), Gaps = 29/136 (21%)
Query: 101 PNWSLLKASFQGAASQTQPPAISQSPGA-----------------MQIISSVLQTRVSLC 143
P +LL+ S PP SPGA +Q + L L
Sbjct: 121 PALALLREGCPADTSVAFPPPPPPSPGAARPARFSFRLRPVFNASVQFLHCQLSRCRRLR 180
Query: 144 GCSGHPAPASFPPLPSPSLLRPRPSSCRGRGQCWVPHAYSDRSSSSLHLL---------- 193
G PAP + PP P PS P+ +C G +D LH L
Sbjct: 181 GVRRAPAPLTPPPPPPPSRCLPQDEACADTGSGSAEGLAAD--GPHLHTLTQPIVVTVPR 238
Query: 194 PPPAASSLFPGRARAP 209
PPP PGRA P
Sbjct: 239 PPPRPPKSVPGRAVRP 254
>gi|113428072 PREDICTED: similar to mCG141871 [Homo sapiens]
Length = 358
Score = 35.4 bits (80), Expect = 0.058
Identities = 37/136 (27%), Positives = 45/136 (33%), Gaps = 29/136 (21%)
Query: 101 PNWSLLKASFQGAASQTQPPAISQSPGA-----------------MQIISSVLQTRVSLC 143
P +LL+ S PP SPGA +Q + L L
Sbjct: 173 PALALLREGCPADTSVAFPPPPPPSPGAARPARFSFRLRPVFNASVQFLHCQLSRCRRLR 232
Query: 144 GCSGHPAPASFPPLPSPSLLRPRPSSCRGRGQCWVPHAYSDRSSSSLHLL---------- 193
G PAP + PP P PS P+ +C G +D LH L
Sbjct: 233 GVRRAPAPLTPPPPPPPSRCLPQDEACADTGSGSAEGLAAD--GPHLHTLTQPIVVTVPR 290
Query: 194 PPPAASSLFPGRARAP 209
PPP PGRA P
Sbjct: 291 PPPRPPKSVPGRAVRP 306
>gi|73858561 proline/serine-rich coiled-coil 1 isoform a [Homo
sapiens]
Length = 333
Score = 35.0 bits (79), Expect = 0.075
Identities = 30/95 (31%), Positives = 45/95 (47%), Gaps = 7/95 (7%)
Query: 123 SQSPGAMQIISSVLQTRVSLCGCSGHPAPASFPPLPSPSLLRPRPSSCRGRGQCWVPHAY 182
S+SP + + S R G SG A + PP P S+L P+PS+ + + P
Sbjct: 184 SKSPASSPLTRSTPPVR-GRAGPSGRAAAS--PPTPIRSVLAPQPSTSNSQ-RLPRPQGA 239
Query: 183 SDRSSSSLHL---LPPPAASSLFPGRARAPGRAVL 214
+ +SSS L + +P PA+ R+ PGR L
Sbjct: 240 AAKSSSQLPIPSAIPRPASRMPLTSRSVPPGRGAL 274
>gi|14249168 proline/serine-rich coiled-coil 1 isoform a [Homo
sapiens]
Length = 333
Score = 35.0 bits (79), Expect = 0.075
Identities = 30/95 (31%), Positives = 45/95 (47%), Gaps = 7/95 (7%)
Query: 123 SQSPGAMQIISSVLQTRVSLCGCSGHPAPASFPPLPSPSLLRPRPSSCRGRGQCWVPHAY 182
S+SP + + S R G SG A + PP P S+L P+PS+ + + P
Sbjct: 184 SKSPASSPLTRSTPPVR-GRAGPSGRAAAS--PPTPIRSVLAPQPSTSNSQ-RLPRPQGA 239
Query: 183 SDRSSSSLHL---LPPPAASSLFPGRARAPGRAVL 214
+ +SSS L + +P PA+ R+ PGR L
Sbjct: 240 AAKSSSQLPIPSAIPRPASRMPLTSRSVPPGRGAL 274
>gi|68161504 Wiskott-Aldrich syndrome protein family member 1 [Homo
sapiens]
Length = 559
Score = 34.7 bits (78), Expect = 0.098
Identities = 30/104 (28%), Positives = 39/104 (37%), Gaps = 15/104 (14%)
Query: 114 ASQTQPPAISQSPGAMQIISSVLQTRVSLCGCSGHPAPASFPPLPSPSLLRPRPSSCRGR 173
A+ Q PA+ P +QI VL HPAP PP+ +P L++P P R
Sbjct: 360 ATALQAPAVPPPPAPLQIAPGVL-----------HPAP---PPI-APPLVQPSPPVARAA 404
Query: 174 GQCWVPHAYSDRSSSSLHLLPPPAASSLFPGRARAPGRAVLRAL 217
C + L PPP L P R + AL
Sbjct: 405 PVCETVPVHPLPQGEVQGLPPPPPPPPLPPPGIRPSSPVTVTAL 448
>gi|68161502 Wiskott-Aldrich syndrome protein family member 1 [Homo
sapiens]
Length = 559
Score = 34.7 bits (78), Expect = 0.098
Identities = 30/104 (28%), Positives = 39/104 (37%), Gaps = 15/104 (14%)
Query: 114 ASQTQPPAISQSPGAMQIISSVLQTRVSLCGCSGHPAPASFPPLPSPSLLRPRPSSCRGR 173
A+ Q PA+ P +QI VL HPAP PP+ +P L++P P R
Sbjct: 360 ATALQAPAVPPPPAPLQIAPGVL-----------HPAP---PPI-APPLVQPSPPVARAA 404
Query: 174 GQCWVPHAYSDRSSSSLHLLPPPAASSLFPGRARAPGRAVLRAL 217
C + L PPP L P R + AL
Sbjct: 405 PVCETVPVHPLPQGEVQGLPPPPPPPPLPPPGIRPSSPVTVTAL 448
>gi|68161500 Wiskott-Aldrich syndrome protein family member 1 [Homo
sapiens]
Length = 559
Score = 34.7 bits (78), Expect = 0.098
Identities = 30/104 (28%), Positives = 39/104 (37%), Gaps = 15/104 (14%)
Query: 114 ASQTQPPAISQSPGAMQIISSVLQTRVSLCGCSGHPAPASFPPLPSPSLLRPRPSSCRGR 173
A+ Q PA+ P +QI VL HPAP PP+ +P L++P P R
Sbjct: 360 ATALQAPAVPPPPAPLQIAPGVL-----------HPAP---PPI-APPLVQPSPPVARAA 404
Query: 174 GQCWVPHAYSDRSSSSLHLLPPPAASSLFPGRARAPGRAVLRAL 217
C + L PPP L P R + AL
Sbjct: 405 PVCETVPVHPLPQGEVQGLPPPPPPPPLPPPGIRPSSPVTVTAL 448
>gi|4507913 Wiskott-Aldrich syndrome protein family member 1 [Homo
sapiens]
Length = 559
Score = 34.7 bits (78), Expect = 0.098
Identities = 30/104 (28%), Positives = 39/104 (37%), Gaps = 15/104 (14%)
Query: 114 ASQTQPPAISQSPGAMQIISSVLQTRVSLCGCSGHPAPASFPPLPSPSLLRPRPSSCRGR 173
A+ Q PA+ P +QI VL HPAP PP+ +P L++P P R
Sbjct: 360 ATALQAPAVPPPPAPLQIAPGVL-----------HPAP---PPI-APPLVQPSPPVARAA 404
Query: 174 GQCWVPHAYSDRSSSSLHLLPPPAASSLFPGRARAPGRAVLRAL 217
C + L PPP L P R + AL
Sbjct: 405 PVCETVPVHPLPQGEVQGLPPPPPPPPLPPPGIRPSSPVTVTAL 448
>gi|33946327 nucleoporin 214kDa [Homo sapiens]
Length = 2090
Score = 34.3 bits (77), Expect = 0.13
Identities = 39/132 (29%), Positives = 49/132 (37%), Gaps = 16/132 (12%)
Query: 90 APGYCTTERCKPNWSLLKASFQG---AASQTQPPAISQSPGAMQIISSVLQTRVSLCGCS 146
AP P+ S +K + AA+ + P + SQS M SS + S G
Sbjct: 567 APNIAMKPSFPPSTSAVKVNLSEKFTAAATSTPVSSSQSAPPMSPFSSASKPAAS--GPL 624
Query: 147 GHPAPASFPP--LPSPSLLRPRPSSCRGRGQCWVPHAYSDRSSSSLHLLPP------PAA 198
HP P S PP +P S + P PS GR S + PP P A
Sbjct: 625 SHPTPLSAPPSSVPLKSSVLPSPS---GRSAQGSSSPVPSMVQKSPRITPPAAKPGSPQA 681
Query: 199 SSLFPGRARAPG 210
SL P A G
Sbjct: 682 KSLQPAVAEKQG 693
>gi|239755710 PREDICTED: hypothetical protein [Homo sapiens]
Length = 402
Score = 34.3 bits (77), Expect = 0.13
Identities = 44/164 (26%), Positives = 55/164 (33%), Gaps = 23/164 (14%)
Query: 85 SGYPWAPGYCTTERCK----PNWSLLKASFQGAASQTQP----------PAISQSPGAMQ 130
+G P +PG C + P + + QG +S P A + PG Q
Sbjct: 105 TGTPQSPGPCAPQALASLLGPGKAGCRTRLQGGSSGASPRRLPGGRGPAAAFAVEPGTGQ 164
Query: 131 IISSVLQTRVSLCGCSGHPAPASFPPLPSPSLLRPRPSSCRGRGQCWVPHAYSDRSSSSL 190
+ + S G PAS PL P L P P RG P S
Sbjct: 165 RPRNTSLAQASRSGTVPGLPPASLQPLRLPYLAPPGPHDPTSRG----PGRLLTCEPPSR 220
Query: 191 HLLPP-PAASSLF----PGRARAPGRAVLRALVLSRCFPEEGLR 229
L PP P S + P R R + L L R PE G R
Sbjct: 221 KLPPPLPPCRSRWVLAPPPTVRPRLRVLTPPLALRRALPERGSR 264
>gi|239752588 PREDICTED: hypothetical protein XP_002348309, partial
[Homo sapiens]
Length = 327
Score = 33.9 bits (76), Expect = 0.17
Identities = 48/173 (27%), Positives = 64/173 (36%), Gaps = 21/173 (12%)
Query: 111 QGAASQTQPPAISQSPGAMQIISSVLQTRVSLCGCSGHPAPASFPPLPSPSLLRPRPS-- 168
+GA S Q P +PG Q + + G P PA P S+L P S
Sbjct: 153 EGALSHPQAPRWPPNPGKSQEDRDWQRDGLPSPCAVGQPGPAQAGP-NGQSVLAPHASQG 211
Query: 169 ---SCRGRGQCWVPHAYSDRSSSSLHLLPPPAASSLFPGR----------ARAPGR--AV 213
S GRG V A+ ++ ++ P P SS + GR R PGR A+
Sbjct: 212 SQWSAWGRGPQVVGAAWEPQAGAAAPHQPAPPESSAWQGRMQGIPASSQALREPGRLPAL 271
Query: 214 LRALVLSRCFPEEGLRELLEQTREREEGSTLKILSKVKFEACRKEEKSVEKCR 266
L L RE L+Q + E L L K A + S E+ R
Sbjct: 272 PSGLQLDELLAS---REFLQQAQRFLETEALGELEAFKVAALLEAPISEEEYR 321
>gi|50428940 mediator complex subunit 25 [Homo sapiens]
Length = 747
Score = 33.9 bits (76), Expect = 0.17
Identities = 31/98 (31%), Positives = 39/98 (39%), Gaps = 23/98 (23%)
Query: 112 GAASQTQPPAISQSP-GAMQIISSVLQTRVSLCGCSGHPAPASFPPLPSPSLLRPRPSSC 170
GA Q QP +Q P GA Q G P AS PP P P +LRP+
Sbjct: 600 GATGQPQPQGTAQPPPGAPQ----------------GPPGAASGPPPPGP-ILRPQNPGA 642
Query: 171 RGRGQCWV-----PHAYSDRSSSSLHLLPPPAASSLFP 203
+ + + P +SLH L PP A +L P
Sbjct: 643 NPQLRSLLLNPPPPQTGVPPPQASLHHLQPPGAPALLP 680
>gi|19111150 angiomotin isoform 2 [Homo sapiens]
Length = 675
Score = 33.5 bits (75), Expect = 0.22
Identities = 27/111 (24%), Positives = 46/111 (41%), Gaps = 13/111 (11%)
Query: 108 ASFQGAASQTQPPAISQSPGAMQIISSVLQTRVSLCGCSGHPAPASFPPLPSPSLLRPRP 167
A+ A+ P A Q P A + S+ + + APA+ P+P+P+L+
Sbjct: 521 ATAAATAAAVSPAAAGQIPAAASVASAAAVAPSAAAAAAVQVAPAAPAPVPAPALVP--- 577
Query: 168 SSCRGRGQCWVPHAYSDRSSSSLHLLPPPAASSLFPGRARAPGRAVLRALV 218
VP + ++S+ P +A ++ P A P AV +A V
Sbjct: 578 ----------VPAPAAAQASAPAQTQAPTSAPAVAPTPAPTPTPAVAQAEV 618
>gi|166064029 angiomotin isoform 1 [Homo sapiens]
Length = 1084
Score = 33.5 bits (75), Expect = 0.22
Identities = 27/111 (24%), Positives = 46/111 (41%), Gaps = 13/111 (11%)
Query: 108 ASFQGAASQTQPPAISQSPGAMQIISSVLQTRVSLCGCSGHPAPASFPPLPSPSLLRPRP 167
A+ A+ P A Q P A + S+ + + APA+ P+P+P+L+
Sbjct: 930 ATAAATAAAVSPAAAGQIPAAASVASAAAVAPSAAAAAAVQVAPAAPAPVPAPALVP--- 986
Query: 168 SSCRGRGQCWVPHAYSDRSSSSLHLLPPPAASSLFPGRARAPGRAVLRALV 218
VP + ++S+ P +A ++ P A P AV +A V
Sbjct: 987 ----------VPAPAAAQASAPAQTQAPTSAPAVAPTPAPTPTPAVAQAEV 1027
>gi|169172231 PREDICTED: hypothetical protein [Homo sapiens]
Length = 237
Score = 33.1 bits (74), Expect = 0.29
Identities = 35/120 (29%), Positives = 45/120 (37%), Gaps = 7/120 (5%)
Query: 59 CGVPALTAASNGHYYLADRRISESATSGYPWAPGYCTTERCKPNWSLLKASFQGAASQTQ 118
CG P AA G R+S A + WA GY + + +
Sbjct: 105 CG-PRGWAAGRGEAGATGLRLSVGAATVRGWAGGYFRGDGGRGVSESVAVGTGPDFLLLS 163
Query: 119 PPAISQSPGAMQIISSVLQTRVSLCGCSGHPAPASFPPLPSPSLLRPRPSSCRGRGQCWV 178
PP + A +SS G G P A PPLPSP L+R R S+ G CW+
Sbjct: 164 PPPPPPAEVAELPLSSAPPLHEEAPGVRGLPRLA--PPLPSPLLVRRRESN----GTCWL 217
>gi|169170975 PREDICTED: hypothetical protein [Homo sapiens]
Length = 237
Score = 33.1 bits (74), Expect = 0.29
Identities = 35/120 (29%), Positives = 45/120 (37%), Gaps = 7/120 (5%)
Query: 59 CGVPALTAASNGHYYLADRRISESATSGYPWAPGYCTTERCKPNWSLLKASFQGAASQTQ 118
CG P AA G R+S A + WA GY + + +
Sbjct: 105 CG-PRGWAAGRGEAGATGLRLSVGAATVRGWAGGYFRGDGGRGVSESVAVGTGPDFLLLS 163
Query: 119 PPAISQSPGAMQIISSVLQTRVSLCGCSGHPAPASFPPLPSPSLLRPRPSSCRGRGQCWV 178
PP + A +SS G G P A PPLPSP L+R R S+ G CW+
Sbjct: 164 PPPPPPAEVAELPLSSAPPLHEEAPGVRGLPRLA--PPLPSPLLVRRRESN----GTCWL 217
>gi|27437042 colony stimulating factor 3 receptor isoform b
precursor [Homo sapiens]
Length = 769
Score = 32.7 bits (73), Expect = 0.37
Identities = 39/135 (28%), Positives = 53/135 (39%), Gaps = 26/135 (19%)
Query: 89 WAPGYCTTERCKPNWSLLKASFQGAASQTQPPAI-------SQSPG----AMQIISSVLQ 137
WAPG C +W + +S A P + S+ PG A + ++S L
Sbjct: 639 WAPG------CPQSWRRMPSSCPALARHPSPSSQCWRRMKRSRCPGSPITAQRPVASPLW 692
Query: 138 TRVSLCGCSGHPAPASFPPLPSPSLLRPRPSSCRGRGQCW-VPHAYSDRSSSSLHLLPPP 196
+R CS FPP P+PSL P+ G CW P A + S++ L P
Sbjct: 693 SRPM---CS-RGTQEQFPPSPNPSL---APAIRSFMGSCWAAPQAQGQGTISAVTPLSPS 745
Query: 197 -AASSLFPGRARAPG 210
AS P R G
Sbjct: 746 WRASPPAPSPMRTSG 760
Score = 29.3 bits (64), Expect = 4.1
Identities = 23/74 (31%), Positives = 32/74 (43%), Gaps = 6/74 (8%)
Query: 105 LLKASFQGAASQTQPPAISQSPGAMQIISSVLQTRVSLCGCSGHPAPASFPPLPSPSLLR 164
L+ AS GA + T ++ +P V QT+++ G P P P+L R
Sbjct: 600 LMAASQAGATNSTVLTLMTLTPAGRIPSGQVSQTQLTAAWAPGCPQSWRRMPSSCPALAR 659
Query: 165 -PRPSSCRGRGQCW 177
P PSS QCW
Sbjct: 660 HPSPSS-----QCW 668
>gi|116284392 mucin 2 precursor [Homo sapiens]
Length = 5179
Score = 32.7 bits (73), Expect = 0.37
Identities = 43/183 (23%), Positives = 63/183 (34%), Gaps = 39/183 (21%)
Query: 9 TTFGTFPPTADESQITTTIRDA-----TAAGSPGKIGPSPFQSLSLGLAGPECPWCGVPA 63
T GT PT TTT+ T G P +P L+ PE P
Sbjct: 4166 TPTGTQTPTTTPITTTTTVTPTPTPTGTQTGPPTHTSTAPIAELTTSNPPPES---STPQ 4222
Query: 64 LTAASNGHYYLADRRISESATSGYPWAPGYCTTERCKPNWSLLKASFQGAASQTQPPAIS 123
+ +++ ++ES T P T P+ + G + + PP+ +
Sbjct: 4223 TSRSTSSP-------LTESTTLLSTLPPAIEMTSTAPPSTPTAPTTTSGGHTLSPPPSTT 4275
Query: 124 QSPGAMQIISSVLQTRVSLCGCSGHPAPASFP------------PLPSPSL-----LRPR 166
SP TR + G S P P++ PL +PS+ LRP
Sbjct: 4276 TSPPGTP-------TRGTTTGSSSAPTPSTVQTTTTSAWTPTPTPLSTPSIIRTTGLRPY 4328
Query: 167 PSS 169
PSS
Sbjct: 4329 PSS 4331
>gi|169210552 PREDICTED: hypothetical protein [Homo sapiens]
Length = 220
Score = 32.3 bits (72), Expect = 0.49
Identities = 40/151 (26%), Positives = 61/151 (40%), Gaps = 21/151 (13%)
Query: 81 ESATSGYPWAPGYCTTERCKPNWSLLKAS----FQGAASQTQPPAISQSPGAMQIISSVL 136
ES PW PG C W+L + + A + QPP + GA+ + +
Sbjct: 29 ESREHRPPWMPG---RRECCCLWTLRRKEHCCLWTPARKKHQPPVDPEKEGALPPVDAGK 85
Query: 137 QTRVSLC--GCSGHPAPASFPPLPSPSLLRPRPSSCRGRGQCWVPHAYSDRSSSSLHLLP 194
+ + G G P +PSP LL PR S + + + S SSS +P
Sbjct: 86 EAALPPVDPGKEGALRPVVPGCVPSPRLLHPRAKS-----KLFFQSSVSPTSSSFPLRVP 140
Query: 195 ----PPAASSLFP---GRARAPGRAVLRALV 218
P ++ P GR RA R ++R+L+
Sbjct: 141 VGVLHPQSTVQEPRIHGRPRATARQIIRSLL 171
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.132 0.422
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,814,317
Number of Sequences: 37866
Number of extensions: 757374
Number of successful extensions: 4174
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 180
Number of HSP's that attempted gapping in prelim test: 3960
Number of HSP's gapped (non-prelim): 421
length of query: 285
length of database: 18,247,518
effective HSP length: 101
effective length of query: 184
effective length of database: 14,423,052
effective search space: 2653841568
effective search space used: 2653841568
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.