Guide to the Human Genome
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Name: LOC100292193 Sequence: fasta or formatted (379aa) NCBI GI: 239754072
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.7         29           2
 C cysteine            4.0         15           2
 D aspartate           1.8          7           1
 E glutamate           5.5         21           2
 F phenylalanine       4.5         17           2
 G glycine             8.2         31           1
 H histidine           1.6          6           1
 I isoleucine          2.6         10           2
 K lysine              5.3         20           2
 L leucine             9.0         34           2
 M methionine          1.1          4           1
 N asparagine          1.6          6           1
 P proline            10.0         38           3
 Q glutamine           4.0         15           1
 R arginine            8.2         31           2
 S serine             11.3         43           4
 T threonine           5.5         21           3
 V valine              4.2         16           1
 W tryptophan          2.1          8           1
 Y tyrosine            1.8          7           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100290488          0.425   PREDICTED: hypothetical protein XP_002346728 
LOC100289347          0.425   PREDICTED: hypothetical protein XP_002342550 
LOC100292745          0.020   PREDICTED: hypothetical protein 
LOC100290074          0.020   PREDICTED: hypothetical protein XP_002346855 
LOC100287034          0.020   PREDICTED: hypothetical protein XP_002342693 
ATOH8                 0.018   atonal homolog 8 
PSRC1                 0.013   proline/serine-rich coiled-coil 1 isoform c 
PSRC1                 0.013   proline/serine-rich coiled-coil 1 isoform a 
PSRC1                 0.013   proline/serine-rich coiled-coil 1 isoform a 
LOC100129907          0.013   PREDICTED: hypothetical protein 
LOC100129907          0.013   PREDICTED: hypothetical protein 
LOC100129907          0.013   PREDICTED: hypothetical protein 
LOC645781             0.010   PREDICTED: similar to mCG141871 
LOC645781             0.010   PREDICTED: similar to mCG141871 
LOC100288993          0.009   PREDICTED: hypothetical protein XP_002342967 
MED25                 0.009   mediator complex subunit 25 
HMCN2                 0.009   PREDICTED: hemicentin 2 
HMCN2                 0.009   PREDICTED: hemicentin 2 
HMCN2                 0.009   PREDICTED: hemicentin 2 
ARTN                  0.009   neurotrophic factor artemin isoform 1 precursor [Ho...
ARTN                  0.009   neurotrophic factor artemin isoform 1 precursor [Ho...
COL4A3BP              0.009   alpha 3 type IV collagen binding protein isoform 3 ...
KCNQ2                 0.009   potassium voltage-gated channel KQT-like protein 2 i...
ARTN                  0.009   neurotrophic factor artemin isoform 2 
ARTN                  0.009   neurotrophic factor artemin isoform 3 precursor [Ho...
ARTN                  0.009   neurotrophic factor artemin isoform 3 precursor [Ho...
MAEL                  0.009   maelstrom homolog 
AGAP2                 0.008   centaurin, gamma 1 isoform PIKE-L 
LOC646034             0.008   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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