Guide to the Human Genome
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Search of human proteins with 239748157

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239748157 PREDICTED: hypothetical protein [Homo sapiens]
         (128 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239748157 PREDICTED: hypothetical protein [Homo sapiens]           273   3e-74
gi|239742055 PREDICTED: hypothetical protein XP_002342401 [Homo ...   273   3e-74
gi|239753508 PREDICTED: hypothetical protein [Homo sapiens]           253   4e-68
gi|88759346 GATA zinc finger domain containing 1 [Homo sapiens]        37   0.004
gi|4826734 fusion (involved in t(12;16) in malignant liposarcoma...    36   0.009
gi|12056465 fibrillarin [Homo sapiens]                                 35   0.012
gi|13994190 frizzled 8 [Homo sapiens]                                  35   0.012
gi|223633890 hypothetical protein LOC729956 [Homo sapiens]             34   0.027
gi|23510368 homeobox D11 [Homo sapiens]                                34   0.027
gi|73427806 v-maf musculoaponeurotic fibrosarcoma oncogene homol...    34   0.027
gi|5453736 v-maf musculoaponeurotic fibrosarcoma oncogene homolo...    34   0.027
gi|167830436 DEAH (Asp-Glu-Ala-His) box polypeptide 36 isoform 2...    34   0.027
gi|167830433 DEAH (Asp-Glu-Ala-His) box polypeptide 36 isoform 1...    34   0.027
gi|40068464 AT rich interactive domain 1B (SWI1-like) isoform 2 ...    34   0.027
gi|40068466 AT rich interactive domain 1B (SWI1-like) isoform 1 ...    34   0.027
gi|40068462 AT rich interactive domain 1B (SWI1-like) isoform 3 ...    34   0.027
gi|169166558 PREDICTED: similar to hCG18094 [Homo sapiens]             34   0.036
gi|169167297 PREDICTED: similar to hCG18094 [Homo sapiens]             34   0.036
gi|169166473 PREDICTED: similar to hCG18094 [Homo sapiens]             34   0.036
gi|239741128 PREDICTED: hypothetical protein XP_002342116 [Homo ...    34   0.036
gi|126116581 retina and anterior neural fold homeobox [Homo sapi...    34   0.036
gi|55741630 hypothetical protein LOC198437 [Homo sapiens]              34   0.036
gi|109452587 family with sequence similarity 98, member B isofor...    34   0.036
gi|27436971 potassium voltage-gated channel, shaker-related subf...    34   0.036
gi|46447823 nuclear factor of activated T-cells, cytoplasmic, ca...    34   0.036
gi|4507163 SRY (sex determining region Y)-box 4 [Homo sapiens]         33   0.046
gi|239754081 PREDICTED: hypothetical protein XP_002345876 [Homo ...    33   0.046
gi|239748667 PREDICTED: hypothetical protein XP_002346761 [Homo ...    33   0.046
gi|239742692 PREDICTED: hypothetical protein XP_002342583 [Homo ...    33   0.046
gi|116284398 WAS/WASL interacting protein family, member 1 [Homo...    33   0.046

>gi|239748157 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 128

 Score =  273 bits (698), Expect = 3e-74
 Identities = 128/128 (100%), Positives = 128/128 (100%)

Query: 1   MAGEAAHLLVWRPGPRGGRAGRREAGGPGHNGGGGRARWAAAARTPALGGGGGSVELAAD 60
           MAGEAAHLLVWRPGPRGGRAGRREAGGPGHNGGGGRARWAAAARTPALGGGGGSVELAAD
Sbjct: 1   MAGEAAHLLVWRPGPRGGRAGRREAGGPGHNGGGGRARWAAAARTPALGGGGGSVELAAD 60

Query: 61  FHAILCPANRLTDRGDASPPPTPQPFWPTALLSPSLSPDSSFPWCSQKEEKKKKKERKKE 120
           FHAILCPANRLTDRGDASPPPTPQPFWPTALLSPSLSPDSSFPWCSQKEEKKKKKERKKE
Sbjct: 61  FHAILCPANRLTDRGDASPPPTPQPFWPTALLSPSLSPDSSFPWCSQKEEKKKKKERKKE 120

Query: 121 KSSLKFQN 128
           KSSLKFQN
Sbjct: 121 KSSLKFQN 128


>gi|239742055 PREDICTED: hypothetical protein XP_002342401 [Homo
           sapiens]
          Length = 128

 Score =  273 bits (698), Expect = 3e-74
 Identities = 128/128 (100%), Positives = 128/128 (100%)

Query: 1   MAGEAAHLLVWRPGPRGGRAGRREAGGPGHNGGGGRARWAAAARTPALGGGGGSVELAAD 60
           MAGEAAHLLVWRPGPRGGRAGRREAGGPGHNGGGGRARWAAAARTPALGGGGGSVELAAD
Sbjct: 1   MAGEAAHLLVWRPGPRGGRAGRREAGGPGHNGGGGRARWAAAARTPALGGGGGSVELAAD 60

Query: 61  FHAILCPANRLTDRGDASPPPTPQPFWPTALLSPSLSPDSSFPWCSQKEEKKKKKERKKE 120
           FHAILCPANRLTDRGDASPPPTPQPFWPTALLSPSLSPDSSFPWCSQKEEKKKKKERKKE
Sbjct: 61  FHAILCPANRLTDRGDASPPPTPQPFWPTALLSPSLSPDSSFPWCSQKEEKKKKKERKKE 120

Query: 121 KSSLKFQN 128
           KSSLKFQN
Sbjct: 121 KSSLKFQN 128


>gi|239753508 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 123

 Score =  253 bits (645), Expect = 4e-68
 Identities = 116/121 (95%), Positives = 120/121 (99%)

Query: 1   MAGEAAHLLVWRPGPRGGRAGRREAGGPGHNGGGGRARWAAAARTPALGGGGGSVELAAD 60
           MAGEAAHLLVWRPGPRGGRAGRREAGGPGHNGGGGRARWAAAARTPALGGGGGSVELAAD
Sbjct: 1   MAGEAAHLLVWRPGPRGGRAGRREAGGPGHNGGGGRARWAAAARTPALGGGGGSVELAAD 60

Query: 61  FHAILCPANRLTDRGDASPPPTPQPFWPTALLSPSLSPDSSFPWCSQKEEKKKKKERKKE 120
           FHAILCPANRLTDRGDASPPPTPQPFWPTALLSPSLSPDSSFPWCSQKEEKKK+K+ +K+
Sbjct: 61  FHAILCPANRLTDRGDASPPPTPQPFWPTALLSPSLSPDSSFPWCSQKEEKKKRKKERKK 120

Query: 121 K 121
           K
Sbjct: 121 K 121


>gi|88759346 GATA zinc finger domain containing 1 [Homo sapiens]
          Length = 269

 Score = 37.0 bits (84), Expect = 0.004
 Identities = 23/59 (38%), Positives = 29/59 (49%), Gaps = 3/59 (5%)

Query: 7  HLLVWRPGPRGGRAGRREAGGPGHNGGGG--RARWAAAARTPAL-GGGGGSVELAADFH 62
          H    R G   G AG   AGG G +GGGG   A +A+ + TP    GGGG  +   + H
Sbjct: 31 HHCTGRGGAGSGGAGSGAAGGTGGSGGGGFGAATFASTSATPPQSNGGGGGKQSKQEIH 89


>gi|4826734 fusion (involved in t(12;16) in malignant liposarcoma)
           [Homo sapiens]
          Length = 526

 Score = 35.8 bits (81), Expect = 0.009
 Identities = 26/75 (34%), Positives = 35/75 (46%), Gaps = 9/75 (12%)

Query: 16  RGGRAGRREAGGPGHNGGGGRARWAAAARTPALGGGGGSVELAADFHA--ILCPANRLTD 73
           RGG  GR   GG G +GGGGR  +      P+ GGGGG  + A D+      C     + 
Sbjct: 388 RGGPMGRGGYGGGG-SGGGGRGGF------PSGGGGGGGQQRAGDWKCPNPTCENMNFSW 440

Query: 74  RGDASPPPTPQPFWP 88
           R + +    P+P  P
Sbjct: 441 RNECNQCKAPKPDGP 455



 Score = 31.6 bits (70), Expect = 0.18
 Identities = 18/38 (47%), Positives = 20/38 (52%), Gaps = 1/38 (2%)

Query: 16  RGGRAGRREAGGPGHNGGGGRARWAAAARTPALGGGGG 53
           RGGR GR  +GG G  GGGG  R +        GGG G
Sbjct: 213 RGGR-GRGGSGGGGGGGGGGYNRSSGGYEPRGRGGGRG 249



 Score = 29.6 bits (65), Expect = 0.67
 Identities = 15/40 (37%), Positives = 20/40 (50%)

Query: 14  GPRGGRAGRREAGGPGHNGGGGRARWAAAARTPALGGGGG 53
           G  GG  G ++  G G +GG G+       R  + GGGGG
Sbjct: 188 GGSGGGYGNQDQSGGGGSGGYGQQDRGGRGRGGSGGGGGG 227



 Score = 26.9 bits (58), Expect = 4.4
 Identities = 14/40 (35%), Positives = 18/40 (45%)

Query: 14  GPRGGRAGRREAGGPGHNGGGGRARWAAAARTPALGGGGG 53
           G  GG   + ++GG G  G G + R          GGGGG
Sbjct: 189 GSGGGYGNQDQSGGGGSGGYGQQDRGGRGRGGSGGGGGGG 228


>gi|12056465 fibrillarin [Homo sapiens]
          Length = 321

 Score = 35.4 bits (80), Expect = 0.012
 Identities = 19/40 (47%), Positives = 19/40 (47%)

Query: 14 GPRGGRAGRREAGGPGHNGGGGRARWAAAARTPALGGGGG 53
          G RGGR GR   GG    GGG R R          GGGGG
Sbjct: 19 GDRGGRGGRGGFGGGRGRGGGFRGRGRGGGGGGGGGGGGG 58



 Score = 32.7 bits (73), Expect = 0.079
 Identities = 21/44 (47%), Positives = 22/44 (50%), Gaps = 3/44 (6%)

Query: 12 RPGPRGGRAGRREAGGPGHNGG--GGRARWAAAARTPALGGGGG 53
          R G  GGR G  + GG G  GG  GGR R     R    GGGGG
Sbjct: 8  RGGGFGGRGGFGDRGGRGGRGGFGGGRGR-GGGFRGRGRGGGGG 50



 Score = 28.9 bits (63), Expect = 1.1
 Identities = 17/39 (43%), Positives = 17/39 (43%), Gaps = 10/39 (25%)

Query: 14 GPRGGRAGRREAGGPGHNGGGGRARWAAAARTPALGGGG 52
          G  GG  GR   GG G  GGGG  R          GGGG
Sbjct: 35 GRGGGFRGRGRGGGGGGGGGGGGGR----------GGGG 63



 Score = 28.1 bits (61), Expect = 2.0
 Identities = 20/54 (37%), Positives = 21/54 (38%), Gaps = 16/54 (29%)

Query: 14 GPRGGRAGRREAG----GPGHNGGGGRARWAAAARTPALGGGGGSVELAADFHA 63
          G RGG  G R  G    G G  GGGG             GGGGG       FH+
Sbjct: 25 GGRGGFGGGRGRGGGFRGRGRGGGGGG------------GGGGGGGRGGGGFHS 66


>gi|13994190 frizzled 8 [Homo sapiens]
          Length = 694

 Score = 35.4 bits (80), Expect = 0.012
 Identities = 18/39 (46%), Positives = 18/39 (46%)

Query: 15  PRGGRAGRREAGGPGHNGGGGRARWAAAARTPALGGGGG 53
           P G   GR     P H GGG       AA  PA GGGGG
Sbjct: 177 PSGSGHGRPPGARPPHRGGGRGGGGGDAAAPPARGGGGG 215



 Score = 30.4 bits (67), Expect = 0.39
 Identities = 18/39 (46%), Positives = 19/39 (48%), Gaps = 3/39 (7%)

Query: 17  GGRAGRREAGGPGHNGGGGRARWAAAARTPALGGGGGSV 55
           GG AG   AGG G  GGGG             GGGGGS+
Sbjct: 630 GGGAGATAAGGGGGPGGGGGGGPGGGG---GPGGGGGSL 665



 Score = 26.2 bits (56), Expect = 7.4
 Identities = 15/39 (38%), Positives = 16/39 (41%)

Query: 12  RPGPRGGRAGRREAGGPGHNGGGGRARWAAAARTPALGG 50
           R G RGG  G   A      GGGG+AR       P   G
Sbjct: 193 RGGGRGGGGGDAAAPPARGGGGGGKARPPGGGAAPCEPG 231



 Score = 25.8 bits (55), Expect = 9.7
 Identities = 18/43 (41%), Positives = 18/43 (41%), Gaps = 3/43 (6%)

Query: 17  GGRAGRREAGGPGHNGGGGRARWAAAARTPALGGGGGSVELAA 59
           GG  G   AGG G  GG      AA A     GG G   EL A
Sbjct: 342 GGAPG---AGGAGGAGGAAAGAGAAGAGAGGPGGRGEYEELGA 381


>gi|223633890 hypothetical protein LOC729956 [Homo sapiens]
          Length = 538

 Score = 34.3 bits (77), Expect = 0.027
 Identities = 19/41 (46%), Positives = 20/41 (48%), Gaps = 2/41 (4%)

Query: 13  PGPRGGRAGRREAGGPGHNGGGGRARWAAAARTPALGGGGG 53
           P P  G AG   AGG G   G G+A W    RT   GG GG
Sbjct: 140 PPPLAGGAGG--AGGAGGGPGPGQAGWLEGGRTGGAGGRGG 178


>gi|23510368 homeobox D11 [Homo sapiens]
          Length = 338

 Score = 34.3 bits (77), Expect = 0.027
 Identities = 29/74 (39%), Positives = 35/74 (47%), Gaps = 5/74 (6%)

Query: 11  WRPGPRGGRAGRREAGG-PGHNGG--GGRARWAAAARTPALGGGGGSVELAADFHAILCP 67
           +R G  GG AG   +GG PG  GG  GG A + AAA   A      + E AA    +L P
Sbjct: 75  YRGGGGGGSAGGGSSGGGPGGGGGGAGGYAPYYAAA--AAAAAAAAAAEEAAMQRELLPP 132

Query: 68  ANRLTDRGDASPPP 81
           A R  D    +P P
Sbjct: 133 AGRRPDVLFKAPEP 146


>gi|73427806 v-maf musculoaponeurotic fibrosarcoma oncogene homolog
           isoform b [Homo sapiens]
          Length = 373

 Score = 34.3 bits (77), Expect = 0.027
 Identities = 22/61 (36%), Positives = 23/61 (37%), Gaps = 2/61 (3%)

Query: 2   AGEAAHLLVWRPGPRGGRAGRREAGGPGHNGGGGRARWAAAARTPALGGGGGSVELAADF 61
           AG   H     PG  G  A    AGG G  GGGG A           GGGGG+       
Sbjct: 189 AGHHHHPTAGAPGAAGSAAA--SAGGAGGAGGGGPASAGGGGGGGGGGGGGGAAGAGGAL 246

Query: 62  H 62
           H
Sbjct: 247 H 247



 Score = 29.3 bits (64), Expect = 0.88
 Identities = 16/36 (44%), Positives = 16/36 (44%)

Query: 17  GGRAGRREAGGPGHNGGGGRARWAAAARTPALGGGG 52
           GG A     GG G  GGGG A  A  A  P    GG
Sbjct: 219 GGPASAGGGGGGGGGGGGGGAAGAGGALHPHHAAGG 254


>gi|5453736 v-maf musculoaponeurotic fibrosarcoma oncogene homolog
           isoform a [Homo sapiens]
          Length = 403

 Score = 34.3 bits (77), Expect = 0.027
 Identities = 22/61 (36%), Positives = 23/61 (37%), Gaps = 2/61 (3%)

Query: 2   AGEAAHLLVWRPGPRGGRAGRREAGGPGHNGGGGRARWAAAARTPALGGGGGSVELAADF 61
           AG   H     PG  G  A    AGG G  GGGG A           GGGGG+       
Sbjct: 189 AGHHHHPTAGAPGAAGSAAA--SAGGAGGAGGGGPASAGGGGGGGGGGGGGGAAGAGGAL 246

Query: 62  H 62
           H
Sbjct: 247 H 247



 Score = 29.3 bits (64), Expect = 0.88
 Identities = 16/36 (44%), Positives = 16/36 (44%)

Query: 17  GGRAGRREAGGPGHNGGGGRARWAAAARTPALGGGG 52
           GG A     GG G  GGGG A  A  A  P    GG
Sbjct: 219 GGPASAGGGGGGGGGGGGGGAAGAGGALHPHHAAGG 254


>gi|167830436 DEAH (Asp-Glu-Ala-His) box polypeptide 36 isoform 2
          [Homo sapiens]
          Length = 994

 Score = 34.3 bits (77), Expect = 0.027
 Identities = 14/23 (60%), Positives = 15/23 (65%)

Query: 14 GPRGGRAGRREAGGPGHNGGGGR 36
          GP GG  G R +GG G  GGGGR
Sbjct: 25 GPAGGHGGNRGSGGGGGGGGGGR 47


>gi|167830433 DEAH (Asp-Glu-Ala-His) box polypeptide 36 isoform 1
          [Homo sapiens]
          Length = 1008

 Score = 34.3 bits (77), Expect = 0.027
 Identities = 14/23 (60%), Positives = 15/23 (65%)

Query: 14 GPRGGRAGRREAGGPGHNGGGGR 36
          GP GG  G R +GG G  GGGGR
Sbjct: 25 GPAGGHGGNRGSGGGGGGGGGGR 47


>gi|40068464 AT rich interactive domain 1B (SWI1-like) isoform 2
           [Homo sapiens]
          Length = 2191

 Score = 34.3 bits (77), Expect = 0.027
 Identities = 19/40 (47%), Positives = 19/40 (47%)

Query: 14  GPRGGRAGRREAGGPGHNGGGGRARWAAAARTPALGGGGG 53
           G  GG  G    GG G  G G  A  AAAA   A  GGGG
Sbjct: 257 GGGGGSGGGGGGGGAGAGGAGAGAVAAAAAAAAAAAGGGG 296



 Score = 33.1 bits (74), Expect = 0.061
 Identities = 24/69 (34%), Positives = 27/69 (39%), Gaps = 13/69 (18%)

Query: 12  RPGPRGGRAGRREAGGPGHNGGGG-------------RARWAAAARTPALGGGGGSVELA 58
           RPG  GG  G    GG    GGGG              A  AAAA     GGGGG    +
Sbjct: 245 RPGAGGGGGGGGGGGGGSGGGGGGGGAGAGGAGAGAVAAAAAAAAAAAGGGGGGGYGGSS 304

Query: 59  ADFHAILCP 67
           A +  +  P
Sbjct: 305 AGYGVLSSP 313


>gi|40068466 AT rich interactive domain 1B (SWI1-like) isoform 1
           [Homo sapiens]
          Length = 2231

 Score = 34.3 bits (77), Expect = 0.027
 Identities = 19/40 (47%), Positives = 19/40 (47%)

Query: 14  GPRGGRAGRREAGGPGHNGGGGRARWAAAARTPALGGGGG 53
           G  GG  G    GG G  G G  A  AAAA   A  GGGG
Sbjct: 257 GGGGGSGGGGGGGGAGAGGAGAGAVAAAAAAAAAAAGGGG 296



 Score = 33.1 bits (74), Expect = 0.061
 Identities = 24/69 (34%), Positives = 27/69 (39%), Gaps = 13/69 (18%)

Query: 12  RPGPRGGRAGRREAGGPGHNGGGG-------------RARWAAAARTPALGGGGGSVELA 58
           RPG  GG  G    GG    GGGG              A  AAAA     GGGGG    +
Sbjct: 245 RPGAGGGGGGGGGGGGGSGGGGGGGGAGAGGAGAGAVAAAAAAAAAAAGGGGGGGYGGSS 304

Query: 59  ADFHAILCP 67
           A +  +  P
Sbjct: 305 AGYGVLSSP 313


>gi|40068462 AT rich interactive domain 1B (SWI1-like) isoform 3
           [Homo sapiens]
          Length = 2178

 Score = 34.3 bits (77), Expect = 0.027
 Identities = 19/40 (47%), Positives = 19/40 (47%)

Query: 14  GPRGGRAGRREAGGPGHNGGGGRARWAAAARTPALGGGGG 53
           G  GG  G    GG G  G G  A  AAAA   A  GGGG
Sbjct: 257 GGGGGSGGGGGGGGAGAGGAGAGAVAAAAAAAAAAAGGGG 296



 Score = 33.1 bits (74), Expect = 0.061
 Identities = 24/69 (34%), Positives = 27/69 (39%), Gaps = 13/69 (18%)

Query: 12  RPGPRGGRAGRREAGGPGHNGGGG-------------RARWAAAARTPALGGGGGSVELA 58
           RPG  GG  G    GG    GGGG              A  AAAA     GGGGG    +
Sbjct: 245 RPGAGGGGGGGGGGGGGSGGGGGGGGAGAGGAGAGAVAAAAAAAAAAAGGGGGGGYGGSS 304

Query: 59  ADFHAILCP 67
           A +  +  P
Sbjct: 305 AGYGVLSSP 313


>gi|169166558 PREDICTED: similar to hCG18094 [Homo sapiens]
          Length = 459

 Score = 33.9 bits (76), Expect = 0.036
 Identities = 20/44 (45%), Positives = 20/44 (45%)

Query: 17  GGRAGRREAGGPGHNGGGGRARWAAAARTPALGGGGGSVELAAD 60
           G RA R   G PG    G R R AA     A  GGGG V   AD
Sbjct: 372 GWRARRAGTGVPGRGWRGDRVRSAAGRYAAAGAGGGGGVPARAD 415


>gi|169167297 PREDICTED: similar to hCG18094 [Homo sapiens]
          Length = 459

 Score = 33.9 bits (76), Expect = 0.036
 Identities = 20/44 (45%), Positives = 20/44 (45%)

Query: 17  GGRAGRREAGGPGHNGGGGRARWAAAARTPALGGGGGSVELAAD 60
           G RA R   G PG    G R R AA     A  GGGG V   AD
Sbjct: 372 GWRARRAGTGVPGRGWRGDRVRSAAGRYAAAGAGGGGGVPARAD 415


>gi|169166473 PREDICTED: similar to hCG18094 [Homo sapiens]
          Length = 459

 Score = 33.9 bits (76), Expect = 0.036
 Identities = 20/44 (45%), Positives = 20/44 (45%)

Query: 17  GGRAGRREAGGPGHNGGGGRARWAAAARTPALGGGGGSVELAAD 60
           G RA R   G PG    G R R AA     A  GGGG V   AD
Sbjct: 372 GWRARRAGTGVPGRGWRGDRVRSAAGRYAAAGAGGGGGVPARAD 415


>gi|239741128 PREDICTED: hypothetical protein XP_002342116 [Homo
           sapiens]
          Length = 132

 Score = 33.9 bits (76), Expect = 0.036
 Identities = 27/76 (35%), Positives = 31/76 (40%), Gaps = 3/76 (3%)

Query: 19  RAGRREAGGPGHNGGGGRARWAAAARTPALGGGGGSVELAADFHAILCPANRLTDRGDAS 78
           R+GRRE G  G  G G RA   +AA  P  G G    E AA   A  C          A 
Sbjct: 28  RSGRRERGARGAGGAGNRAPRPSAA--PTCGPGQAGAERAAG-EAADCRRTVWASGSAAP 84

Query: 79  PPPTPQPFWPTALLSP 94
            PP  +     AL+ P
Sbjct: 85  TPPRGRVTLSPALIQP 100


>gi|126116581 retina and anterior neural fold homeobox [Homo
           sapiens]
          Length = 346

 Score = 33.9 bits (76), Expect = 0.036
 Identities = 25/74 (33%), Positives = 31/74 (41%), Gaps = 7/74 (9%)

Query: 27  GPGHNGG--GGRARWAAAARTPALGGGGGSVELAADFHAILCPANRLTDRGDASPPPTPQ 84
           GPG  GG  GG     +    P  GGG  +++    F     PA  L      +PPP P 
Sbjct: 227 GPGSGGGPAGGALPLESWLGPPLPGGGATALQSLPGFGP---PAQSLP--ASYTPPPPPP 281

Query: 85  PFWPTALLSPSLSP 98
           PF  +  L P L P
Sbjct: 282 PFLNSPPLGPGLQP 295


>gi|55741630 hypothetical protein LOC198437 [Homo sapiens]
          Length = 240

 Score = 33.9 bits (76), Expect = 0.036
 Identities = 33/112 (29%), Positives = 42/112 (37%), Gaps = 13/112 (11%)

Query: 13  PGPRGGRAGRREAGG---PGHNGGGGRARWAAAARTP----ALGGGGGSVELAADFHAIL 65
           P   GGR G RE  G   PG   G  RA+ A A   P    AL   G +  L A  H  L
Sbjct: 4   PAKEGGRKGPRERSGKSAPGTAQGEERAKGAPATEPPKPGWALTPQGLAAMLPAQRHRHL 63

Query: 66  CPANRLTDRGDASPPPTPQPFWPTALLSPSLSPDSSFPWCSQKEEKKKKKER 117
              + L D G A+        +P   + P        PW    E   +++ R
Sbjct: 64  LFGDLLEDVGAAAST------FPCGSVEPGYRMPDPRPWTQSLELPAERQNR 109


>gi|109452587 family with sequence similarity 98, member B isoform 1
           [Homo sapiens]
          Length = 433

 Score = 33.9 bits (76), Expect = 0.036
 Identities = 19/41 (46%), Positives = 19/41 (46%), Gaps = 1/41 (2%)

Query: 14  GPRGGRAGRREAGGPGHNGGG-GRARWAAAARTPALGGGGG 53
           G RGG  G    GG G  GGG GR  W         GGGGG
Sbjct: 333 GGRGGWGGGGGGGGRGGGGGGGGRGGWGGGGGGWGGGGGGG 373



 Score = 32.3 bits (72), Expect = 0.10
 Identities = 18/44 (40%), Positives = 20/44 (45%), Gaps = 1/44 (2%)

Query: 11  WRPGPRGGRAGRREAGGPGHNGG-GGRARWAAAARTPALGGGGG 53
           W  G  GGR G +  G  G  GG GGR  +         GGGGG
Sbjct: 376 WGGGGGGGRGGFQGRGDYGGRGGYGGRGGYGGRGYGDPYGGGGG 419



 Score = 31.2 bits (69), Expect = 0.23
 Identities = 19/53 (35%), Positives = 21/53 (39%), Gaps = 7/53 (13%)

Query: 8   LLVWRPGPRGGRAGRREAGGPG-------HNGGGGRARWAAAARTPALGGGGG 53
           +L+ R   RGGR    E   P          GGGGR  W         GGGGG
Sbjct: 300 VLMGRVPDRGGRPNEIEPPPPEMPPWQKRQEGGGGRGGWGGGGGGGGRGGGGG 352



 Score = 30.8 bits (68), Expect = 0.30
 Identities = 17/40 (42%), Positives = 17/40 (42%)

Query: 14  GPRGGRAGRREAGGPGHNGGGGRARWAAAARTPALGGGGG 53
           G  GGR G    GG G  GGGG             GGGGG
Sbjct: 342 GGGGGRGGGGGGGGRGGWGGGGGGWGGGGGGGGGWGGGGG 381



 Score = 29.6 bits (65), Expect = 0.67
 Identities = 18/42 (42%), Positives = 18/42 (42%), Gaps = 7/42 (16%)

Query: 14  GPRGGRAGRREAGGPGHNGG--GGRARWAAAARTPALGGGGG 53
           G  GG  GR   GG G  GG  GG   W         GGGGG
Sbjct: 339 GGGGGGGGRGGGGGGGGRGGWGGGGGGWGGGG-----GGGGG 375



 Score = 28.9 bits (63), Expect = 1.1
 Identities = 18/43 (41%), Positives = 19/43 (44%), Gaps = 3/43 (6%)

Query: 11  WRPGPRGGRAGRREAGGPGHNGGGGRARWAAAARTPALGGGGG 53
           W+    GG  GR   GG G  GGGGR            GGGGG
Sbjct: 325 WQKRQEGG-GGRGGWGGGG--GGGGRGGGGGGGGRGGWGGGGG 364



 Score = 28.5 bits (62), Expect = 1.5
 Identities = 16/43 (37%), Positives = 17/43 (39%)

Query: 11  WRPGPRGGRAGRREAGGPGHNGGGGRARWAAAARTPALGGGGG 53
           W  G  G   G    GG G  GGGGR  +         GG GG
Sbjct: 359 WGGGGGGWGGGGGGGGGWGGGGGGGRGGFQGRGDYGGRGGYGG 401



 Score = 26.2 bits (56), Expect = 7.4
 Identities = 18/43 (41%), Positives = 18/43 (41%), Gaps = 16/43 (37%)

Query: 14  GPRGGRAGRREA---GGPGHNGGGGRARWAAAARTPALGGGGG 53
           G RGG  GR      GG G  GGGG             GGGGG
Sbjct: 400 GGRGGYGGRGYGDPYGGGGGGGGGG-------------GGGGG 429


>gi|27436971 potassium voltage-gated channel, shaker-related
          subfamily, beta member 3 [Homo sapiens]
          Length = 404

 Score = 33.9 bits (76), Expect = 0.036
 Identities = 21/44 (47%), Positives = 22/44 (50%), Gaps = 7/44 (15%)

Query: 12 RPGPRGGRAGRREAGG-----PGHNGGGGRARWAAAARTPALGG 50
          RPGP GG  G   AGG     PG  G G +AR A   R PA  G
Sbjct: 25 RPGPGGGNGG--PAGGGHGNPPGGGGSGPKARAALVPRPPAPAG 66


>gi|46447823 nuclear factor of activated T-cells, cytoplasmic,
          calcineurin-dependent 2 interacting protein [Homo
          sapiens]
          Length = 419

 Score = 33.9 bits (76), Expect = 0.036
 Identities = 26/76 (34%), Positives = 32/76 (42%), Gaps = 4/76 (5%)

Query: 14 GPRGGRAGRREAGGPGHNGGGGRARWAAAARTPALGG-GGGSVELAADFHAIL---CPAN 69
          G RG  +G   AG  G  G GGR R   A R+P+ G     SV+L  D    +     A 
Sbjct: 6  GKRGRWSGGSGAGRGGRGGWGGRGRRPRAQRSPSRGTLDVVSVDLVTDSDEEILEVATAR 65

Query: 70 RLTDRGDASPPPTPQP 85
             D  +  PP  P P
Sbjct: 66 GAADEVEVEPPEPPGP 81


>gi|4507163 SRY (sex determining region Y)-box 4 [Homo sapiens]
          Length = 474

 Score = 33.5 bits (75), Expect = 0.046
 Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 8/43 (18%)

Query: 12  RPGPRGGRAGRREAGGPGHNGGGGRARWAAAARTPALGGGGGS 54
           +PG +G + G   +GG GH GGGG         + A GGGGG+
Sbjct: 150 KPGEKGDKVGG--SGGGGHGGGGG------GGSSNAGGGGGGA 184


>gi|239754081 PREDICTED: hypothetical protein XP_002345876 [Homo
           sapiens]
          Length = 355

 Score = 33.5 bits (75), Expect = 0.046
 Identities = 33/94 (35%), Positives = 40/94 (42%), Gaps = 10/94 (10%)

Query: 12  RPGPRGGRAGRREAGG-PGHNGGGGRARWAAAARTPALGGGGGSVELAADFHAI-LCPAN 69
           RP P     G R+AG  PG  G    A   +AAR PA    GGSV  AA    + L P  
Sbjct: 196 RPEPGPHHTGARQAGPLPGTRGRTRAAGTGSAARGPARHLRGGSVAAAAAARCLGLSPPG 255

Query: 70  R---LTDRGDASPPPTPQPFWPTALLSPSLSPDS 100
           R    + R   + PP   P        P+LSP +
Sbjct: 256 RSRLFSPRSSLARPPLRFP-----PARPALSPSA 284


>gi|239748667 PREDICTED: hypothetical protein XP_002346761 [Homo
           sapiens]
          Length = 355

 Score = 33.5 bits (75), Expect = 0.046
 Identities = 33/94 (35%), Positives = 40/94 (42%), Gaps = 10/94 (10%)

Query: 12  RPGPRGGRAGRREAGG-PGHNGGGGRARWAAAARTPALGGGGGSVELAADFHAI-LCPAN 69
           RP P     G R+AG  PG  G    A   +AAR PA    GGSV  AA    + L P  
Sbjct: 196 RPEPGPHHTGARQAGPLPGTRGRTRAAGTGSAARGPARHLRGGSVAAAAAARCLGLSPPG 255

Query: 70  R---LTDRGDASPPPTPQPFWPTALLSPSLSPDS 100
           R    + R   + PP   P        P+LSP +
Sbjct: 256 RSRLFSPRSSLARPPLRFP-----PARPALSPSA 284


>gi|239742692 PREDICTED: hypothetical protein XP_002342583 [Homo
           sapiens]
          Length = 355

 Score = 33.5 bits (75), Expect = 0.046
 Identities = 33/94 (35%), Positives = 40/94 (42%), Gaps = 10/94 (10%)

Query: 12  RPGPRGGRAGRREAGG-PGHNGGGGRARWAAAARTPALGGGGGSVELAADFHAI-LCPAN 69
           RP P     G R+AG  PG  G    A   +AAR PA    GGSV  AA    + L P  
Sbjct: 196 RPEPGPHHTGARQAGPLPGTRGRTRAAGTGSAARGPARHLRGGSVAAAAAARCLGLSPPG 255

Query: 70  R---LTDRGDASPPPTPQPFWPTALLSPSLSPDS 100
           R    + R   + PP   P        P+LSP +
Sbjct: 256 RSRLFSPRSSLARPPLRFP-----PARPALSPSA 284


>gi|116284398 WAS/WASL interacting protein family, member 1 [Homo
           sapiens]
          Length = 503

 Score = 33.5 bits (75), Expect = 0.046
 Identities = 24/70 (34%), Positives = 26/70 (37%), Gaps = 5/70 (7%)

Query: 14  GPRGGRAGRREAGGPGHNGGGGRARWAAAARTPALGGGGGSVELAADFHAILCPANRLTD 73
           G  GG  G    GG G  GGGG          P LGG        A    +   ANR  D
Sbjct: 66  GAGGGGGGFGGGGGFGGGGGGGGGGSFGGGGPPGLGG-----LFQAGMPKLRSTANRDND 120

Query: 74  RGDASPPPTP 83
            G + PP  P
Sbjct: 121 SGGSRPPLLP 130


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.313    0.133    0.430 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,448,216
Number of Sequences: 37866
Number of extensions: 476468
Number of successful extensions: 7112
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 351
Number of HSP's successfully gapped in prelim test: 398
Number of HSP's that attempted gapping in prelim test: 4391
Number of HSP's gapped (non-prelim): 2601
length of query: 128
length of database: 18,247,518
effective HSP length: 90
effective length of query: 38
effective length of database: 14,839,578
effective search space: 563903964
effective search space used: 563903964
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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