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Search of human proteins with 239747885
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239747885 PREDICTED: hypothetical protein XP_002346466 [Homo
sapiens]
(122 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239758063 PREDICTED: similar to hCG1989297 [Homo sapiens] 268 7e-73
gi|239747885 PREDICTED: hypothetical protein XP_002346466 [Homo ... 268 7e-73
gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 31 0.26
gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 31 0.26
gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo sapi... 31 0.26
gi|194272140 dendrin [Homo sapiens] 31 0.26
gi|169164558 PREDICTED: hypothetical protein [Homo sapiens] 30 0.34
gi|239748011 PREDICTED: hypothetical protein [Homo sapiens] 30 0.34
gi|169163356 PREDICTED: hypothetical protein [Homo sapiens] 30 0.34
gi|62548866 integrin, alpha D precursor [Homo sapiens] 30 0.45
gi|4557743 Mediterranean fever protein [Homo sapiens] 30 0.58
gi|190358543 hypothetical protein LOC57654 [Homo sapiens] 30 0.58
gi|239753180 PREDICTED: hypothetical protein [Homo sapiens] 29 0.76
gi|239747754 PREDICTED: hypothetical protein XP_002348260 [Homo ... 29 0.76
gi|239741620 PREDICTED: hypothetical protein XP_002342250 [Homo ... 29 0.76
gi|61966919 hypothetical protein LOC442444 [Homo sapiens] 29 0.76
gi|149393138 hypothetical protein LOC84067 isoform 2 [Homo sapiens] 29 1.00
gi|149393140 hypothetical protein LOC84067 isoform 1 [Homo sapiens] 29 1.00
gi|61966717 arylacetamide deacetylase-like 4 [Homo sapiens] 29 1.00
gi|157688564 diacylglycerol kinase zeta isoform 4 [Homo sapiens] 28 1.3
gi|41872522 diacylglycerol kinase zeta isoform 1 [Homo sapiens] 28 1.3
gi|41872507 diacylglycerol kinase zeta isoform 2 [Homo sapiens] 28 1.3
gi|41872527 diacylglycerol kinase zeta isoform 3 [Homo sapiens] 28 1.3
gi|28195386 sex-determining region Y-box 2 [Homo sapiens] 28 1.3
gi|187607445 hypothetical protein LOC79137 [Homo sapiens] 28 1.3
gi|22779860 forkhead box L1 [Homo sapiens] 28 2.2
gi|224458284 Rho GTPase activating protein 23 [Homo sapiens] 27 2.9
gi|239748340 PREDICTED: hypothetical protein XP_002346633 [Homo ... 27 2.9
gi|48928019 Nedd4 binding protein 1 [Homo sapiens] 27 2.9
gi|187937179 apoptosis-associated tyrosine kinase [Homo sapiens] 27 2.9
>gi|239758063 PREDICTED: similar to hCG1989297 [Homo sapiens]
Length = 122
Score = 268 bits (685), Expect = 7e-73
Identities = 122/122 (100%), Positives = 122/122 (100%)
Query: 1 MKAGSGQTYPVRECLLCLHFCSSPPWCCSGSHTRPEPASASPRRSLPEPTSESRVLLCED 60
MKAGSGQTYPVRECLLCLHFCSSPPWCCSGSHTRPEPASASPRRSLPEPTSESRVLLCED
Sbjct: 1 MKAGSGQTYPVRECLLCLHFCSSPPWCCSGSHTRPEPASASPRRSLPEPTSESRVLLCED 60
Query: 61 YQARVQGNQGEEVGPAALAGAFSVLFGRTPPPRIRWKSCRGELALWHPRLRPGACPGWME 120
YQARVQGNQGEEVGPAALAGAFSVLFGRTPPPRIRWKSCRGELALWHPRLRPGACPGWME
Sbjct: 61 YQARVQGNQGEEVGPAALAGAFSVLFGRTPPPRIRWKSCRGELALWHPRLRPGACPGWME 120
Query: 121 AR 122
AR
Sbjct: 121 AR 122
>gi|239747885 PREDICTED: hypothetical protein XP_002346466 [Homo
sapiens]
Length = 122
Score = 268 bits (685), Expect = 7e-73
Identities = 122/122 (100%), Positives = 122/122 (100%)
Query: 1 MKAGSGQTYPVRECLLCLHFCSSPPWCCSGSHTRPEPASASPRRSLPEPTSESRVLLCED 60
MKAGSGQTYPVRECLLCLHFCSSPPWCCSGSHTRPEPASASPRRSLPEPTSESRVLLCED
Sbjct: 1 MKAGSGQTYPVRECLLCLHFCSSPPWCCSGSHTRPEPASASPRRSLPEPTSESRVLLCED 60
Query: 61 YQARVQGNQGEEVGPAALAGAFSVLFGRTPPPRIRWKSCRGELALWHPRLRPGACPGWME 120
YQARVQGNQGEEVGPAALAGAFSVLFGRTPPPRIRWKSCRGELALWHPRLRPGACPGWME
Sbjct: 61 YQARVQGNQGEEVGPAALAGAFSVLFGRTPPPRIRWKSCRGELALWHPRLRPGACPGWME 120
Query: 121 AR 122
AR
Sbjct: 121 AR 122
>gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 855
Score = 30.8 bits (68), Expect = 0.26
Identities = 24/91 (26%), Positives = 33/91 (36%), Gaps = 8/91 (8%)
Query: 35 PEPASASPRRSLPEPTSESRVLLCEDYQARVQG-NQGEEVGPAA-------LAGAFSVLF 86
P P S SP +L P ++G + G E G AA LA +
Sbjct: 612 PPPPSRSPSSTLSGPDLAGHSSSATSTPEELRGYDSGPEGGAAASPPPDAELAACHPAAW 671
Query: 87 GRTPPPRIRWKSCRGELALWHPRLRPGACPG 117
R P P + ++ G W P PG+ G
Sbjct: 672 SRGPAPPLAFRGAPGAPLPWPPATGPGSADG 702
>gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 1124
Score = 30.8 bits (68), Expect = 0.26
Identities = 24/91 (26%), Positives = 33/91 (36%), Gaps = 8/91 (8%)
Query: 35 PEPASASPRRSLPEPTSESRVLLCEDYQARVQG-NQGEEVGPAA-------LAGAFSVLF 86
P P S SP +L P ++G + G E G AA LA +
Sbjct: 881 PPPPSRSPSSTLSGPDLAGHSSSATSTPEELRGYDSGPEGGAAASPPPDAELAACHPAAW 940
Query: 87 GRTPPPRIRWKSCRGELALWHPRLRPGACPG 117
R P P + ++ G W P PG+ G
Sbjct: 941 SRGPAPPLAFRGAPGAPLPWPPATGPGSADG 971
>gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo
sapiens]
Length = 816
Score = 30.8 bits (68), Expect = 0.26
Identities = 24/91 (26%), Positives = 33/91 (36%), Gaps = 8/91 (8%)
Query: 35 PEPASASPRRSLPEPTSESRVLLCEDYQARVQG-NQGEEVGPAA-------LAGAFSVLF 86
P P S SP +L P ++G + G E G AA LA +
Sbjct: 573 PPPPSRSPSSTLSGPDLAGHSSSATSTPEELRGYDSGPEGGAAASPPPDAELAACHPAAW 632
Query: 87 GRTPPPRIRWKSCRGELALWHPRLRPGACPG 117
R P P + ++ G W P PG+ G
Sbjct: 633 SRGPAPPLAFRGAPGAPLPWPPATGPGSADG 663
>gi|194272140 dendrin [Homo sapiens]
Length = 711
Score = 30.8 bits (68), Expect = 0.26
Identities = 24/86 (27%), Positives = 33/86 (38%), Gaps = 5/86 (5%)
Query: 28 CSGSHTRPEPASASPRRSLPEPTSESRVLLCEDYQARVQGNQGEEVGPAALAGAFSVLFG 87
C + RPEP +SL ++ QA+ G+ G E+ PA A A
Sbjct: 300 CGAARARPEPGKGVVEKSLGLAAADLNSGSDSHPQAKATGSAGTEIAPAGSATAAPCAPH 359
Query: 88 RTPPPRIRWKSCR----GELALWHPR 109
P R K R GE +W P+
Sbjct: 360 PAPRSRHHLKGSREGKEGE-QIWFPK 384
>gi|169164558 PREDICTED: hypothetical protein [Homo sapiens]
Length = 181
Score = 30.4 bits (67), Expect = 0.34
Identities = 19/75 (25%), Positives = 34/75 (45%), Gaps = 6/75 (8%)
Query: 22 SSPPWCCSGSHTRPEPASASP----RRSLPEPTSESRVLLCEDYQARVQGNQGEEVGPAA 77
+SPPW +G+ P PAS+ P R+ P+ V E +A + + + P++
Sbjct: 26 ASPPWSPAGTRRWPAPASSRPLVPAARAADSPSEACTVSAAE--KASSEPSLARKPLPSS 83
Query: 78 LAGAFSVLFGRTPPP 92
+ + + PPP
Sbjct: 84 ASACSASALSKLPPP 98
>gi|239748011 PREDICTED: hypothetical protein [Homo sapiens]
Length = 181
Score = 30.4 bits (67), Expect = 0.34
Identities = 19/75 (25%), Positives = 34/75 (45%), Gaps = 6/75 (8%)
Query: 22 SSPPWCCSGSHTRPEPASASP----RRSLPEPTSESRVLLCEDYQARVQGNQGEEVGPAA 77
+SPPW +G+ P PAS+ P R+ P+ V E +A + + + P++
Sbjct: 26 ASPPWSPAGTRRWPAPASSRPLVPAARAADSPSEACTVSAAE--KASSEPSLARKPLPSS 83
Query: 78 LAGAFSVLFGRTPPP 92
+ + + PPP
Sbjct: 84 ASACSASALSKLPPP 98
>gi|169163356 PREDICTED: hypothetical protein [Homo sapiens]
Length = 181
Score = 30.4 bits (67), Expect = 0.34
Identities = 19/75 (25%), Positives = 34/75 (45%), Gaps = 6/75 (8%)
Query: 22 SSPPWCCSGSHTRPEPASASP----RRSLPEPTSESRVLLCEDYQARVQGNQGEEVGPAA 77
+SPPW +G+ P PAS+ P R+ P+ V E +A + + + P++
Sbjct: 26 ASPPWSPAGTRRWPAPASSRPLVPAARAADSPSEACTVSAAE--KASSEPSLARKPLPSS 83
Query: 78 LAGAFSVLFGRTPPP 92
+ + + PPP
Sbjct: 84 ASACSASALSKLPPP 98
>gi|62548866 integrin, alpha D precursor [Homo sapiens]
Length = 1161
Score = 30.0 bits (66), Expect = 0.45
Identities = 22/77 (28%), Positives = 30/77 (38%), Gaps = 5/77 (6%)
Query: 5 SGQTYPVRECLLCLHFCSSPPWCCSGSHTRPEPASASPRRSLPEPTSESRVLLCEDYQAR 64
+ QT + +C C P H RPE + S +L T+ SR+L C R
Sbjct: 58 ANQTGRLYDCAAATGMCQPIPL-----HIRPEAVNMSLGLTLAASTNGSRLLACGPTLHR 112
Query: 65 VQGNQGEEVGPAALAGA 81
V G G L G+
Sbjct: 113 VCGENSYSKGSCLLLGS 129
>gi|4557743 Mediterranean fever protein [Homo sapiens]
Length = 781
Score = 29.6 bits (65), Expect = 0.58
Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 13/66 (19%)
Query: 22 SSPPWC--CSGSHTRPEPASASPRRSLPE---PTSESRVLLCEDYQARV-------QGNQ 69
S P C C SH R P S SP + LP+ + ++L CED+ + Q +Q
Sbjct: 347 SRSPGCPRCQDSHERKSPGSLSP-QPLPQCKRHLKQVQLLFCEDHDEPICLICSLSQEHQ 405
Query: 70 GEEVGP 75
G V P
Sbjct: 406 GHRVRP 411
>gi|190358543 hypothetical protein LOC57654 [Homo sapiens]
Length = 709
Score = 29.6 bits (65), Expect = 0.58
Identities = 16/31 (51%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Query: 35 PEPASASPRRSLPEPTSESRVLLCEDYQARV 65
P P+SASP R+LPEP E++ L E +A V
Sbjct: 472 PPPSSASPSRALPEP-QEAQKLAAERARAPV 501
>gi|239753180 PREDICTED: hypothetical protein [Homo sapiens]
Length = 130
Score = 29.3 bits (64), Expect = 0.76
Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 3/30 (10%)
Query: 24 PPWCCSGSHTRPE---PASASPRRSLPEPT 50
P W CS +H P PAS+ RSLP P+
Sbjct: 47 PGWVCSDTHISPGTCFPASSPRERSLPVPS 76
>gi|239747754 PREDICTED: hypothetical protein XP_002348260 [Homo
sapiens]
Length = 130
Score = 29.3 bits (64), Expect = 0.76
Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 3/30 (10%)
Query: 24 PPWCCSGSHTRPE---PASASPRRSLPEPT 50
P W CS +H P PAS+ RSLP P+
Sbjct: 47 PGWVCSDTHISPGTCFPASSPRERSLPVPS 76
>gi|239741620 PREDICTED: hypothetical protein XP_002342250 [Homo
sapiens]
Length = 130
Score = 29.3 bits (64), Expect = 0.76
Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 3/30 (10%)
Query: 24 PPWCCSGSHTRPE---PASASPRRSLPEPT 50
P W CS +H P PAS+ RSLP P+
Sbjct: 47 PGWVCSDTHISPGTCFPASSPRERSLPVPS 76
>gi|61966919 hypothetical protein LOC442444 [Homo sapiens]
Length = 1035
Score = 29.3 bits (64), Expect = 0.76
Identities = 14/31 (45%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Query: 19 HFCSSPPWCCSGSHTRPEPASASPRRSLPEP 49
H C PP GSH RPEP PEP
Sbjct: 425 HLCLEPPKT-RGSHLRPEPPETGVSHLRPEP 454
Score = 29.3 bits (64), Expect = 0.76
Identities = 26/84 (30%), Positives = 35/84 (41%), Gaps = 7/84 (8%)
Query: 19 HFCSSPPWCCSGSHTRPEPASASPRRSLPEPTSESRVLLCEDYQARVQGNQGEEVGPAAL 78
H C PP SH RPEP+ PEP ++L+ +QA + + + P
Sbjct: 497 HLCPEPPKT-RVSHLRPEPSETGVSHLRPEP---PKILVSSLHQAPPESSV-SHLRPEPP 551
Query: 79 AGAFSVLFGRTPPPRIRWKSCRGE 102
S L R PP+ R S R E
Sbjct: 552 ETGVSHL--RPEPPKTRMYSLRPE 573
Score = 28.5 bits (62), Expect = 1.3
Identities = 30/88 (34%), Positives = 37/88 (42%), Gaps = 15/88 (17%)
Query: 19 HFCSSPPWCCSGSHTRPEPASASPRRSLPEPTSESRV--LLCEDYQARVQG--NQGEEVG 74
H C PP SH RPEP R PEP ++RV L E ++RV + E G
Sbjct: 677 HLCPEPPET-RVSHLRPEPPETGVSRLHPEP-PKTRVSSLHAEPPESRVSHLCPEPPETG 734
Query: 75 PAALAGAFSVLFGRTPPPRIRWKSCRGE 102
+ L R PP+ R S R E
Sbjct: 735 VSHL---------RPEPPKPRVSSLRPE 753
Score = 26.2 bits (56), Expect = 6.5
Identities = 13/31 (41%), Positives = 13/31 (41%), Gaps = 1/31 (3%)
Query: 19 HFCSSPPWCCSGSHTRPEPASASPRRSLPEP 49
H C PP SH RPEP PEP
Sbjct: 473 HLCPEPPEK-DVSHLRPEPPDTGVSHLCPEP 502
Score = 26.2 bits (56), Expect = 6.5
Identities = 13/31 (41%), Positives = 13/31 (41%), Gaps = 1/31 (3%)
Query: 19 HFCSSPPWCCSGSHTRPEPASASPRRSLPEP 49
H C PP SH RPEP PEP
Sbjct: 605 HLCPEPPET-RVSHLRPEPPETGVSHLRPEP 634
Score = 26.2 bits (56), Expect = 6.5
Identities = 16/37 (43%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Query: 19 HFCSSPPWCCSGSHTRPEPASASPRRSLPEPTSESRV 55
H C PP SH RPEP PEP E+RV
Sbjct: 725 HLCPEPPET-GVSHLRPEPPKPRVSSLRPEPL-ETRV 759
>gi|149393138 hypothetical protein LOC84067 isoform 2 [Homo sapiens]
Length = 972
Score = 28.9 bits (63), Expect = 1.00
Identities = 21/78 (26%), Positives = 32/78 (41%), Gaps = 7/78 (8%)
Query: 17 CLHFCSSPPWCCSGSHTRPEPASASPRRSLPEPTSESRVLLCEDYQARVQGNQGEEVGPA 76
C+ C + G PEP+ R ++ R LL E+ + V + EE+G
Sbjct: 565 CVRACRTWSAPYDGERPSPEPSPFGSR-------TKKRSLLPEEDRNNVGEGEEEELGRR 617
Query: 77 ALAGAFSVLFGRTPPPRI 94
AG G PPP++
Sbjct: 618 GRAGGAGEGPGHLPPPQL 635
>gi|149393140 hypothetical protein LOC84067 isoform 1 [Homo sapiens]
Length = 986
Score = 28.9 bits (63), Expect = 1.00
Identities = 21/78 (26%), Positives = 32/78 (41%), Gaps = 7/78 (8%)
Query: 17 CLHFCSSPPWCCSGSHTRPEPASASPRRSLPEPTSESRVLLCEDYQARVQGNQGEEVGPA 76
C+ C + G PEP+ R ++ R LL E+ + V + EE+G
Sbjct: 579 CVRACRTWSAPYDGERPSPEPSPFGSR-------TKKRSLLPEEDRNNVGEGEEEELGRR 631
Query: 77 ALAGAFSVLFGRTPPPRI 94
AG G PPP++
Sbjct: 632 GRAGGAGEGPGHLPPPQL 649
>gi|61966717 arylacetamide deacetylase-like 4 [Homo sapiens]
Length = 407
Score = 28.9 bits (63), Expect = 1.00
Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 11/43 (25%)
Query: 53 SRVLLCEDYQARVQGNQGEEVGPAALAGAFSVLFGRTPPPRIR 95
SRV++C GE VG AA+A L GR+ PRIR
Sbjct: 185 SRVVVC-----------GESVGGAAVAAITQALVGRSDLPRIR 216
>gi|157688564 diacylglycerol kinase zeta isoform 4 [Homo sapiens]
Length = 1117
Score = 28.5 bits (62), Expect = 1.3
Identities = 21/55 (38%), Positives = 24/55 (43%), Gaps = 4/55 (7%)
Query: 35 PEPASASPRRSLPEPTSESRVLLCEDYQARVQGN----QGEEVGPAALAGAFSVL 85
PE AS R LP PTS C +QG+ QGEE+ AA F L
Sbjct: 941 PELLGASARPDLPTPTSPLPTSPCSPTPRSLQGDAAPPQGEELIEAAKRNDFCKL 995
>gi|41872522 diacylglycerol kinase zeta isoform 1 [Homo sapiens]
Length = 945
Score = 28.5 bits (62), Expect = 1.3
Identities = 21/55 (38%), Positives = 24/55 (43%), Gaps = 4/55 (7%)
Query: 35 PEPASASPRRSLPEPTSESRVLLCEDYQARVQGN----QGEEVGPAALAGAFSVL 85
PE AS R LP PTS C +QG+ QGEE+ AA F L
Sbjct: 769 PELLGASARPDLPTPTSPLPTSPCSPTPRSLQGDAAPPQGEELIEAAKRNDFCKL 823
>gi|41872507 diacylglycerol kinase zeta isoform 2 [Homo sapiens]
Length = 929
Score = 28.5 bits (62), Expect = 1.3
Identities = 21/55 (38%), Positives = 24/55 (43%), Gaps = 4/55 (7%)
Query: 35 PEPASASPRRSLPEPTSESRVLLCEDYQARVQGN----QGEEVGPAALAGAFSVL 85
PE AS R LP PTS C +QG+ QGEE+ AA F L
Sbjct: 753 PELLGASARPDLPTPTSPLPTSPCSPTPRSLQGDAAPPQGEELIEAAKRNDFCKL 807
>gi|41872527 diacylglycerol kinase zeta isoform 3 [Homo sapiens]
Length = 895
Score = 28.5 bits (62), Expect = 1.3
Identities = 21/55 (38%), Positives = 24/55 (43%), Gaps = 4/55 (7%)
Query: 35 PEPASASPRRSLPEPTSESRVLLCEDYQARVQGN----QGEEVGPAALAGAFSVL 85
PE AS R LP PTS C +QG+ QGEE+ AA F L
Sbjct: 719 PELLGASARPDLPTPTSPLPTSPCSPTPRSLQGDAAPPQGEELIEAAKRNDFCKL 773
>gi|28195386 sex-determining region Y-box 2 [Homo sapiens]
Length = 317
Score = 28.5 bits (62), Expect = 1.3
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 11/52 (21%)
Query: 22 SSPPWCCSGSHTRPEPASAS----------PRRSLPEPTSESRVLLCEDYQA 63
SSPP S SH+R P A P +PEP + SR+ + + YQ+
Sbjct: 250 SSPPVVTSSSHSRA-PCQAGDLRDMISMYLPGAEVPEPAAPSRLHMSQHYQS 300
>gi|187607445 hypothetical protein LOC79137 [Homo sapiens]
Length = 543
Score = 28.5 bits (62), Expect = 1.3
Identities = 18/50 (36%), Positives = 22/50 (44%), Gaps = 6/50 (12%)
Query: 23 SPPWCCSGSHTRPEPASASP-----RRSLPEPTSESRVLLCEDYQARVQG 67
SPP C GS P P+ P + LP P E L ED++ QG
Sbjct: 450 SPPLCLVGSDPAPSPSILPPVPQDSPQPLPAP-EEEEALTTEDFELLDQG 498
>gi|22779860 forkhead box L1 [Homo sapiens]
Length = 345
Score = 27.7 bits (60), Expect = 2.2
Identities = 16/65 (24%), Positives = 25/65 (38%), Gaps = 2/65 (3%)
Query: 34 RPEPASASPRRSLPEPTSESRVLLCEDYQARVQGNQGEEVG--PAALAGAFSVLFGRTPP 91
+P+P +P P + R + G G + AA AG +L G +PP
Sbjct: 144 KPKPGPGAPEAKRPRAETHQRSAEAQPEAGSGAGGSGPAISRLQAAPAGPSPLLDGPSPP 203
Query: 92 PRIRW 96
+ W
Sbjct: 204 APLHW 208
>gi|224458284 Rho GTPase activating protein 23 [Homo sapiens]
Length = 1397
Score = 27.3 bits (59), Expect = 2.9
Identities = 28/94 (29%), Positives = 33/94 (35%), Gaps = 21/94 (22%)
Query: 24 PPWCCSGSHTRPEPASASPRRSL-PEPTSESRVLLCEDYQARVQGNQGEEVGPAALAGAF 82
PP C T PA AS R ++ PEPTS + PAA +
Sbjct: 91 PPPICYPRKTYAPPARASTRATMVPEPTSAL---------------PSDPRSPAAWSDP- 134
Query: 83 SVLFGRTPPPRIRWKSCRGELALWHPRLRPGACP 116
G PP R L + PR PGA P
Sbjct: 135 ----GLRVPPAARAHLDNSSLGMSQPRPSPGAFP 164
>gi|239748340 PREDICTED: hypothetical protein XP_002346633 [Homo
sapiens]
Length = 465
Score = 27.3 bits (59), Expect = 2.9
Identities = 15/29 (51%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Query: 37 PASASPRRSLPEPTSESRVLLCEDYQARV 65
P+SASP R+LPEP E++ L E +A V
Sbjct: 266 PSSASPSRALPEP-QEAQKLAAERARAPV 293
>gi|48928019 Nedd4 binding protein 1 [Homo sapiens]
Length = 896
Score = 27.3 bits (59), Expect = 2.9
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 21 CSSPPWCCSGSHTRPEPASASPRRSLPE 48
C CCS H++P ++ SP LP+
Sbjct: 542 CEKRLGCCSSPHSKPNCSTLSPPMPLPQ 569
>gi|187937179 apoptosis-associated tyrosine kinase [Homo sapiens]
Length = 1374
Score = 27.3 bits (59), Expect = 2.9
Identities = 23/77 (29%), Positives = 29/77 (37%), Gaps = 4/77 (5%)
Query: 3 AGSGQTYPVRECLLCLHFCSSPPWCCSGSHTRPEPASASPRRSLPEPT-SESRVLLCEDY 61
+G G+ P LL L S P C P P + P P+ S S+ L
Sbjct: 1050 SGPGEVLPP---LLQLEGSSPEPSTCPSGLVPEPPEPQGPAKVRPGPSPSCSQFFLLTPV 1106
Query: 62 QARVQGNQGEEVGPAAL 78
R +GN E GP L
Sbjct: 1107 PLRSEGNSSEFQGPPGL 1123
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.136 0.473
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,961,285
Number of Sequences: 37866
Number of extensions: 364574
Number of successful extensions: 1278
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 42
Number of HSP's that attempted gapping in prelim test: 1237
Number of HSP's gapped (non-prelim): 84
length of query: 122
length of database: 18,247,518
effective HSP length: 89
effective length of query: 33
effective length of database: 14,877,444
effective search space: 490955652
effective search space used: 490955652
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.