Guide to the Human Genome
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Name: LOC100293579 Sequence: fasta or formatted (122aa) NCBI GI: 239758063
Description:

PREDICTED: similar to hCG1989297

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.0         11           2
 C cysteine            6.6          8           2
 D aspartate           0.8          1           1
 E glutamate           7.4          9           2
 F phenylalanine       2.5          3           1
 G glycine             9.0         11           1
 H histidine           2.5          3           1
 I isoleucine          0.8          1           1
 K lysine              1.6          2           1
 L leucine             9.0         11           2
 M methionine          1.6          2           1
 N asparagine          0.8          1           1
 P proline            12.3         15           3
 Q glutamine           3.3          4           1
 R arginine           10.7         13           2
 S serine              9.8         12           2
 T threonine           3.3          4           1
 V valine              4.1          5           1
 W tryptophan          3.3          4           1
 Y tyrosine            1.6          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to hCG1989297 
LOC100290949          1.000   PREDICTED: hypothetical protein XP_002346466 
FLJ22184              0.025   PREDICTED: hypothetical protein FLJ22184 
FLJ22184              0.025   PREDICTED: hypothetical protein FLJ22184 
FLJ22184              0.025   PREDICTED: hypothetical protein LOC80164 
DDN                   0.025   dendrin 
LOC100128572          0.021   PREDICTED: hypothetical protein 
LOC100128572          0.021   PREDICTED: hypothetical protein 
LOC100128572          0.021   PREDICTED: hypothetical protein 
ITGAD                 0.021   integrin, alpha D precursor 
MEFV                  0.021   Mediterranean fever protein 
KIAA1530              0.021   hypothetical protein LOC57654 
LOC100292566          0.016   PREDICTED: hypothetical protein 
LOC100291188          0.016   PREDICTED: hypothetical protein XP_002348260 
LOC100287511          0.016   PREDICTED: hypothetical protein XP_002342250 
FAM47C                0.016   hypothetical protein LOC442444 
FAM160A2              0.016   hypothetical protein LOC84067 isoform 2 
FAM160A2              0.016   hypothetical protein LOC84067 isoform 1 
AADACL4               0.016   arylacetamide deacetylase-like 4 
DGKZ                  0.012   diacylglycerol kinase zeta isoform 4 
DGKZ                  0.012   diacylglycerol kinase zeta isoform 1 
DGKZ                  0.012   diacylglycerol kinase zeta isoform 2 
DGKZ                  0.012   diacylglycerol kinase zeta isoform 3 
SOX2                  0.012   sex-determining region Y-box 2 
FAM134A               0.012   hypothetical protein LOC79137 
FOXL1                 0.012   forkhead box L1 
ARHGAP23              0.008   Rho GTPase activating protein 23 
LOC100290485          0.008   PREDICTED: hypothetical protein XP_002346633 
N4BP1                 0.008   Nedd4 binding protein 1 
AATK                  0.008   apoptosis-associated tyrosine kinase 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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