Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 239747873
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239747873 PREDICTED: hypothetical protein XP_002346456 [Homo
sapiens]
(61 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239747873 PREDICTED: hypothetical protein XP_002346456 [Homo ... 131 1e-31
gi|239744137 PREDICTED: hypothetical protein XP_002343043 [Homo ... 126 4e-30
gi|239748777 PREDICTED: hypothetical protein [Homo sapiens] 29 0.71
gi|58218984 single stranded DNA binding protein 4 isoform b [Hom... 29 0.71
gi|14249150 single stranded DNA binding protein 4 isoform a [Hom... 29 0.71
gi|148612809 WNK lysine deficient protein kinase 1 [Homo sapiens] 29 0.93
gi|208431824 forkhead box I3 [Homo sapiens] 29 0.93
gi|226495417 coiled-coil domain containing 102A [Homo sapiens] 28 1.2
gi|4826726 fibroblast growth factor 19 precursor [Homo sapiens] 28 1.2
gi|21687188 hypothetical protein LOC146325 [Homo sapiens] 28 1.2
gi|84570137 homeobox B3 [Homo sapiens] 28 1.2
gi|239749931 PREDICTED: FLJ43861 protein [Homo sapiens] 28 1.6
gi|148886716 downstream of Stk11 [Homo sapiens] 28 1.6
gi|23510323 nephroretinin [Homo sapiens] 28 2.1
gi|51093859 calcium channel, voltage-dependent, T type, alpha 1I... 28 2.1
gi|21361077 calcium channel, voltage-dependent, T type, alpha 1I... 28 2.1
gi|239753114 PREDICTED: hypothetical protein [Homo sapiens] 27 2.7
gi|154146199 sal-like 3 [Homo sapiens] 27 2.7
gi|163914392 glioma tumor suppressor candidate region gene 1 [Ho... 27 2.7
gi|169214712 PREDICTED: hypothetical protein [Homo sapiens] 27 3.5
gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 27 3.5
gi|239753290 PREDICTED: hypothetical protein XP_002345611 [Homo ... 27 3.5
gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 27 3.5
gi|239747859 PREDICTED: hypothetical protein [Homo sapiens] 27 3.5
gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo sapi... 27 3.5
gi|239741741 PREDICTED: hypothetical protein XP_002342309 [Homo ... 27 3.5
gi|154800457 centrosomal protein 68kDa [Homo sapiens] 27 3.5
gi|114431244 von Willebrand factor C and EGF domains [Homo sapiens] 27 3.5
gi|239753559 PREDICTED: hypothetical protein XP_002345696 [Homo ... 27 4.6
gi|239748103 PREDICTED: hypothetical protein [Homo sapiens] 27 4.6
>gi|239747873 PREDICTED: hypothetical protein XP_002346456 [Homo
sapiens]
Length = 61
Score = 131 bits (329), Expect = 1e-31
Identities = 61/61 (100%), Positives = 61/61 (100%)
Query: 1 MPRARPGLRLPTGSATAPGRPSVHCAGQFDSRAPYSASSAPSQGRWPSRGFPPMSLFIPA 60
MPRARPGLRLPTGSATAPGRPSVHCAGQFDSRAPYSASSAPSQGRWPSRGFPPMSLFIPA
Sbjct: 1 MPRARPGLRLPTGSATAPGRPSVHCAGQFDSRAPYSASSAPSQGRWPSRGFPPMSLFIPA 60
Query: 61 A 61
A
Sbjct: 61 A 61
>gi|239744137 PREDICTED: hypothetical protein XP_002343043 [Homo
sapiens]
Length = 61
Score = 126 bits (316), Expect = 4e-30
Identities = 58/61 (95%), Positives = 60/61 (98%)
Query: 1 MPRARPGLRLPTGSATAPGRPSVHCAGQFDSRAPYSASSAPSQGRWPSRGFPPMSLFIPA 60
MPRARPGLRLPTGSA APGRPSVHCAGQFDSRAPYSASSAPS+GRWPSRGFPP+SLFIPA
Sbjct: 1 MPRARPGLRLPTGSAIAPGRPSVHCAGQFDSRAPYSASSAPSEGRWPSRGFPPISLFIPA 60
Query: 61 A 61
A
Sbjct: 61 A 61
>gi|239748777 PREDICTED: hypothetical protein [Homo sapiens]
Length = 350
Score = 29.3 bits (64), Expect = 0.71
Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Query: 11 PTGSATAPGRPSVHCAGQFDSRAPYSASSAPSQGRWPSRGFPPMSLFIP 59
P G A +P RP V+ Q+ SRA + SA S S FPP P
Sbjct: 13 PPGVAESPARPRVN--EQWGSRAHPNPRSASSAAAAASSSFPPPGFIHP 59
>gi|58218984 single stranded DNA binding protein 4 isoform b [Homo
sapiens]
Length = 363
Score = 29.3 bits (64), Expect = 0.71
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 8/62 (12%)
Query: 7 GLRLPTGSATAPGRPSVHC--------AGQFDSRAPYSASSAPSQGRWPSRGFPPMSLFI 58
G+R P S PG P+++ A + PYS+SS S P G PP + +
Sbjct: 195 GMRPPPNSLAGPGLPAMNMGPGVRGPWASPSGNSIPYSSSSPGSYTGPPGGGGPPGTPIM 254
Query: 59 PA 60
P+
Sbjct: 255 PS 256
>gi|14249150 single stranded DNA binding protein 4 isoform a [Homo
sapiens]
Length = 385
Score = 29.3 bits (64), Expect = 0.71
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 8/62 (12%)
Query: 7 GLRLPTGSATAPGRPSVHC--------AGQFDSRAPYSASSAPSQGRWPSRGFPPMSLFI 58
G+R P S PG P+++ A + PYS+SS S P G PP + +
Sbjct: 217 GMRPPPNSLAGPGLPAMNMGPGVRGPWASPSGNSIPYSSSSPGSYTGPPGGGGPPGTPIM 276
Query: 59 PA 60
P+
Sbjct: 277 PS 278
>gi|148612809 WNK lysine deficient protein kinase 1 [Homo sapiens]
Length = 2382
Score = 28.9 bits (63), Expect = 0.93
Identities = 15/45 (33%), Positives = 20/45 (44%)
Query: 16 TAPGRPSVHCAGQFDSRAPYSASSAPSQGRWPSRGFPPMSLFIPA 60
+APG+ + AP SA+SA S G + PP PA
Sbjct: 2286 SAPGQLCISMTSNLGGSAPISAASATSLGHFTKSMCPPQQYGFPA 2330
>gi|208431824 forkhead box I3 [Homo sapiens]
Length = 420
Score = 28.9 bits (63), Expect = 0.93
Identities = 22/61 (36%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Query: 4 ARPGLRLPTGSATAPGRPSVHCA--GQFDSRAPYSASSAPSQG-RWPSRGFPPMSLFIPA 60
++PGL P +A APG P A G D AP +A++ P P G PP + A
Sbjct: 13 SQPGLPPPAATAAAPGAPPAARAPYGLADYAAPPAAAANPYLWLNGPGVGGPPSAAAAAA 72
Query: 61 A 61
A
Sbjct: 73 A 73
>gi|226495417 coiled-coil domain containing 102A [Homo sapiens]
Length = 550
Score = 28.5 bits (62), Expect = 1.2
Identities = 20/53 (37%), Positives = 22/53 (41%), Gaps = 1/53 (1%)
Query: 2 PRARPGLRLPTGSA-TAPGRPSVHCAGQFDSRAPYSASSAPSQGRWPSRGFPP 53
PR +L GS T G PS G DS P S PS G P+ PP
Sbjct: 7 PRLAESPQLSKGSLLTILGSPSPERMGPADSLPPTPPSGTPSPGPPPALPLPP 59
>gi|4826726 fibroblast growth factor 19 precursor [Homo sapiens]
Length = 216
Score = 28.5 bits (62), Expect = 1.2
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 32 RAPYSASSAPSQGRWPSRGFPPMSLFIP 59
R P S SSA + + +RGF P+S F+P
Sbjct: 140 RLPVSLSSAKQRQLYKNRGFLPLSHFLP 167
>gi|21687188 hypothetical protein LOC146325 [Homo sapiens]
Length = 571
Score = 28.5 bits (62), Expect = 1.2
Identities = 21/60 (35%), Positives = 25/60 (41%), Gaps = 5/60 (8%)
Query: 2 PRARPGLRLPTGSATAPGRP-----SVHCAGQFDSRAPYSASSAPSQGRWPSRGFPPMSL 56
P +P PTG+A AP S+HC G SRA S P R +G P L
Sbjct: 98 PGRQPQGARPTGAAPAPDLVVADIHSLHCGGGPKSRAKGSPGPPPPVARATRKGPGPSGL 157
>gi|84570137 homeobox B3 [Homo sapiens]
Length = 431
Score = 28.5 bits (62), Expect = 1.2
Identities = 20/49 (40%), Positives = 23/49 (46%), Gaps = 8/49 (16%)
Query: 5 RPGLRLPTGSATAPGRPSVHCAGQFDSRAPYSASSAPSQGRWPSRGFPP 53
RPGL P + PG P S AP SA+S S G PS+ PP
Sbjct: 75 RPGLA-PEPLSAPPGSPP-------PSAAPTSATSNSSNGGGPSKSGPP 115
>gi|239749931 PREDICTED: FLJ43861 protein [Homo sapiens]
Length = 642
Score = 28.1 bits (61), Expect = 1.6
Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 18/60 (30%)
Query: 11 PTGSATA------PGRPSVH-----CAGQFDSRAPYSASSAPSQGRW-------PSRGFP 52
P GSA A P RP + CAGQ D+ Y + + P++ RW P R P
Sbjct: 251 PVGSAAACEMRPDPRRPHLPLPNSPCAGQVDAAHTYLSPTHPARERWTLSAPASPQRALP 310
>gi|148886716 downstream of Stk11 [Homo sapiens]
Length = 447
Score = 28.1 bits (61), Expect = 1.6
Identities = 15/41 (36%), Positives = 20/41 (48%)
Query: 4 ARPGLRLPTGSATAPGRPSVHCAGQFDSRAPYSASSAPSQG 44
AR G P + P RP G D+R+P S+ AP +G
Sbjct: 387 ARGGPVGPCPPSPPPRRPRERSPGPVDTRSPASSGKAPPRG 427
>gi|23510323 nephroretinin [Homo sapiens]
Length = 1426
Score = 27.7 bits (60), Expect = 2.1
Identities = 12/40 (30%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 6 PGLRLPTGSATAPGRPSVHCAGQFDSRAPYSASSAPSQGR 45
PGL + + A +P P+ HC + S+ P+ + ++P+Q +
Sbjct: 500 PGLSI-SQLAASPRSPTQHCLARPTSQLPHGSQASPAQAQ 538
>gi|51093859 calcium channel, voltage-dependent, T type, alpha 1I
subunit isoform b [Homo sapiens]
Length = 2188
Score = 27.7 bits (60), Expect = 2.1
Identities = 12/15 (80%), Positives = 12/15 (80%)
Query: 6 PGLRLPTGSATAPGR 20
PG RLPTGS APGR
Sbjct: 1725 PGPRLPTGSPGAPGR 1739
>gi|21361077 calcium channel, voltage-dependent, T type, alpha 1I
subunit isoform a [Homo sapiens]
Length = 2223
Score = 27.7 bits (60), Expect = 2.1
Identities = 12/15 (80%), Positives = 12/15 (80%)
Query: 6 PGLRLPTGSATAPGR 20
PG RLPTGS APGR
Sbjct: 1760 PGPRLPTGSPGAPGR 1774
>gi|239753114 PREDICTED: hypothetical protein [Homo sapiens]
Length = 322
Score = 27.3 bits (59), Expect = 2.7
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 2 PRAR-PGLRLPTGSATAPGRPSVHCAGQFDSRAPYSASSAPS 42
PRA+ PG RL G + GR + SR+P++A +AP+
Sbjct: 261 PRAQHPGCRLRAGCEPSCGRLGRGYQQRLPSRSPHAAPAAPA 302
>gi|154146199 sal-like 3 [Homo sapiens]
Length = 1300
Score = 27.3 bits (59), Expect = 2.7
Identities = 17/54 (31%), Positives = 22/54 (40%)
Query: 8 LRLPTGSATAPGRPSVHCAGQFDSRAPYSASSAPSQGRWPSRGFPPMSLFIPAA 61
L P A+ PG P+ A S AP A+ AP+ + P S P A
Sbjct: 292 LSRPESGASTPGGPAEPSAPAAPSAAPAPAAPAPAPAPQSAASSQPQSASTPPA 345
>gi|163914392 glioma tumor suppressor candidate region gene 1 [Homo
sapiens]
Length = 1560
Score = 27.3 bits (59), Expect = 2.7
Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Query: 4 ARPGLRLPTGSATAPGRPSVHCAGQFDSRAPYSASSAPSQGRWPSRGFPPM 54
A P G T+P SV +GQ S P + S AP+ + G PP+
Sbjct: 981 AAPQTSTSLGPLTSPAA-SVLVSGQAPSGTPTAPSHAPAPAPMAATGLPPL 1030
>gi|169214712 PREDICTED: hypothetical protein [Homo sapiens]
Length = 235
Score = 26.9 bits (58), Expect = 3.5
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 6/43 (13%)
Query: 13 GSATAPGRPSVHCAGQFDSRAPYSASSAPSQGR--WPSRGFPP 53
G +PGRPSV C D+ P +++ ++ R +PS F P
Sbjct: 10 GGVFSPGRPSVSC----DTPIPAASAQRGTKNRESYPSSAFQP 48
>gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 855
Score = 26.9 bits (58), Expect = 3.5
Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 3 RARPGLRLPTGSATAPGRPSVHCAGQFDSRAPYSASSAP 41
R PG LP AT PG C +++ P SA+ AP
Sbjct: 682 RGAPGAPLPWPPATGPGSADGLCT-IYETEGPESATPAP 719
>gi|239753290 PREDICTED: hypothetical protein XP_002345611 [Homo
sapiens]
Length = 144
Score = 26.9 bits (58), Expect = 3.5
Identities = 14/41 (34%), Positives = 20/41 (48%)
Query: 1 MPRARPGLRLPTGSATAPGRPSVHCAGQFDSRAPYSASSAP 41
+PR RP +RLP SA + + G + AP A + P
Sbjct: 85 VPRGRPDVRLPVPSARSGAQRPAQGPGLRPAAAPRGAMAEP 125
>gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 1124
Score = 26.9 bits (58), Expect = 3.5
Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 3 RARPGLRLPTGSATAPGRPSVHCAGQFDSRAPYSASSAP 41
R PG LP AT PG C +++ P SA+ AP
Sbjct: 951 RGAPGAPLPWPPATGPGSADGLCT-IYETEGPESATPAP 988
>gi|239747859 PREDICTED: hypothetical protein [Homo sapiens]
Length = 595
Score = 26.9 bits (58), Expect = 3.5
Identities = 14/41 (34%), Positives = 20/41 (48%)
Query: 1 MPRARPGLRLPTGSATAPGRPSVHCAGQFDSRAPYSASSAP 41
+PR RP +RLP SA + + G + AP A + P
Sbjct: 536 VPRGRPDVRLPVPSARSGAQRPAQGPGLRPAAAPRGAMAEP 576
>gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo
sapiens]
Length = 816
Score = 26.9 bits (58), Expect = 3.5
Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 3 RARPGLRLPTGSATAPGRPSVHCAGQFDSRAPYSASSAP 41
R PG LP AT PG C +++ P SA+ AP
Sbjct: 643 RGAPGAPLPWPPATGPGSADGLCT-IYETEGPESATPAP 680
>gi|239741741 PREDICTED: hypothetical protein XP_002342309 [Homo
sapiens]
Length = 404
Score = 26.9 bits (58), Expect = 3.5
Identities = 14/41 (34%), Positives = 20/41 (48%)
Query: 1 MPRARPGLRLPTGSATAPGRPSVHCAGQFDSRAPYSASSAP 41
+PR RP +RLP SA + + G + AP A + P
Sbjct: 345 VPRGRPDVRLPVPSARSGAQRPAQGPGLRPAAAPRGAMAEP 385
>gi|154800457 centrosomal protein 68kDa [Homo sapiens]
Length = 757
Score = 26.9 bits (58), Expect = 3.5
Identities = 12/39 (30%), Positives = 18/39 (46%)
Query: 11 PTGSATAPGRPSVHCAGQFDSRAPYSASSAPSQGRWPSR 49
P + +P S +C + P+S PS +WPSR
Sbjct: 343 PASTLKSPTNVSPNCPPAEATALPFSGPREPSLKQWPSR 381
>gi|114431244 von Willebrand factor C and EGF domains [Homo sapiens]
Length = 955
Score = 26.9 bits (58), Expect = 3.5
Identities = 16/47 (34%), Positives = 18/47 (38%), Gaps = 1/47 (2%)
Query: 2 PRARPGLRLPTGSATAP-GRPSVHCAGQFDSRAPYSASSAPSQGRWP 47
PR PG P G+ T P P +SAS A RWP
Sbjct: 842 PRLSPGPSTPPGAPTLPLASPGAPQPPPVTPERSFSASGAQIVSRWP 888
>gi|239753559 PREDICTED: hypothetical protein XP_002345696 [Homo
sapiens]
Length = 366
Score = 26.6 bits (57), Expect = 4.6
Identities = 13/25 (52%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Query: 5 RPGLRL-PTGSATAPGRPSVHCAGQ 28
RPGL+L P+ S + P RPS AG+
Sbjct: 22 RPGLQLFPSPSGSPPSRPSTRKAGE 46
>gi|239748103 PREDICTED: hypothetical protein [Homo sapiens]
Length = 366
Score = 26.6 bits (57), Expect = 4.6
Identities = 13/25 (52%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Query: 5 RPGLRL-PTGSATAPGRPSVHCAGQ 28
RPGL+L P+ S + P RPS AG+
Sbjct: 22 RPGLQLFPSPSGSPPSRPSTRKAGE 46
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.133 0.434
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,179,401
Number of Sequences: 37866
Number of extensions: 151010
Number of successful extensions: 933
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 900
Number of HSP's gapped (non-prelim): 70
length of query: 61
length of database: 18,247,518
effective HSP length: 34
effective length of query: 27
effective length of database: 16,960,074
effective search space: 457921998
effective search space used: 457921998
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.