Guide to the Human Genome
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Name: LOC100288907 Sequence: fasta or formatted (61aa) NCBI GI: 239744137
Description:

PREDICTED: hypothetical protein XP_002343043

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            14.8          9           2
 C cysteine            1.6          1           1
 D aspartate           1.6          1           1
 E glutamate           1.6          1           1
 F phenylalanine       4.9          3           1
 G glycine             9.8          6           1
 H histidine           1.6          1           1
 I isoleucine          4.9          3           1
 K lysine              0.0          0           0
 L leucine             4.9          3           1
 M methionine          1.6          1           1
 N asparagine          0.0          0           0
 P proline            18.0         11           2
 Q glutamine           1.6          1           1
 R arginine           11.5          7           1
 S serine             14.8          9           2
 T threonine           1.6          1           1
 V valine              1.6          1           1
 W tryptophan          1.6          1           1
 Y tyrosine            1.6          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002343043 
LOC100291465          0.962   PREDICTED: hypothetical protein XP_002346456 
RGS3                  0.029   regulator of G-protein signalling 3 isoform 6 [Homo...
RGS3                  0.029   regulator of G-protein signalling 3 isoform 2 
RGS3                  0.029   regulator of G-protein signalling 3 isoform 1 
FGF19                 0.029   fibroblast growth factor 19 precursor 
LOC100130360          0.029   PREDICTED: hypothetical protein 
FOXI3                 0.029   forkhead box I3 
SSBP4                 0.029   single stranded DNA binding protein 4 isoform b [Hom...
HOXB3                 0.029   homeobox B3 
SSBP4                 0.029   single stranded DNA binding protein 4 isoform a [Hom...
CCDC102A              0.029   coiled-coil domain containing 102A 
FLJ33544              0.029   PREDICTED: hypothetical protein 
LOC100129906          0.019   PREDICTED: hypothetical protein 
LOC732146             0.019   PREDICTED: hypothetical protein 
LOC399829             0.019   PREDICTED: FLJ43861 protein 
LOC100129906          0.019   PREDICTED: hypothetical protein 
LOC732146             0.019   PREDICTED: hypothetical protein 
LOC100129906          0.019   PREDICTED: hypothetical protein 
C16orf11              0.019   hypothetical protein LOC146325 
TNFRSF6B              0.019   tumor necrosis factor receptor superfamily, member 6...
TNFRSF6B              0.019   tumor necrosis factor receptor superfamily, member 6b...
WNK1                  0.019   WNK lysine deficient protein kinase 1 
LOC100291603          0.019   PREDICTED: hypothetical protein XP_002345611 
LOC100287807          0.019   PREDICTED: hypothetical protein 
LOC100287807          0.019   PREDICTED: hypothetical protein XP_002342309 
CACNA1I               0.019   calcium channel, voltage-dependent, T type, alpha 1I...
CACNA1I               0.019   calcium channel, voltage-dependent, T type, alpha 1I...
C19orf26              0.019   downstream of Stk11 
LOC100292865          0.019   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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