Guide to the Human Genome
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Name: LOC100291465 Sequence: fasta or formatted (61aa) NCBI GI: 239747873
Description:

PREDICTED: hypothetical protein XP_002346456

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            14.8          9           2
 C cysteine            1.6          1           1
 D aspartate           1.6          1           1
 E glutamate           0.0          0           0
 F phenylalanine       4.9          3           1
 G glycine             9.8          6           1
 H histidine           1.6          1           1
 I isoleucine          1.6          1           1
 K lysine              0.0          0           0
 L leucine             4.9          3           1
 M methionine          3.3          2           1
 N asparagine          0.0          0           0
 P proline            18.0         11           2
 Q glutamine           3.3          2           1
 R arginine           11.5          7           1
 S serine             14.8          9           2
 T threonine           3.3          2           1
 V valine              1.6          1           1
 W tryptophan          1.6          1           1
 Y tyrosine            1.6          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002346456 
LOC100288907          0.953   PREDICTED: hypothetical protein XP_002343043 
LOC100130360          0.038   PREDICTED: hypothetical protein 
SSBP4                 0.038   single stranded DNA binding protein 4 isoform b [Hom...
SSBP4                 0.038   single stranded DNA binding protein 4 isoform a [Hom...
WNK1                  0.038   WNK lysine deficient protein kinase 1 
FOXI3                 0.038   forkhead box I3 
CCDC102A              0.028   coiled-coil domain containing 102A 
FGF19                 0.028   fibroblast growth factor 19 precursor 
C16orf11              0.028   hypothetical protein LOC146325 
HOXB3                 0.028   homeobox B3 
LOC399829             0.028   PREDICTED: FLJ43861 protein 
C19orf26              0.028   downstream of Stk11 
NPHP4                 0.028   nephroretinin 
CACNA1I               0.028   calcium channel, voltage-dependent, T type, alpha 1I...
CACNA1I               0.028   calcium channel, voltage-dependent, T type, alpha 1I...
LOC100292865          0.019   PREDICTED: hypothetical protein 
SALL3                 0.019   sal-like 3 
GLTSCR1               0.019   glioma tumor suppressor candidate region gene 1 [Ho...
FLJ33544              0.019   PREDICTED: hypothetical protein 
FLJ22184              0.019   PREDICTED: hypothetical protein FLJ22184 
LOC100291603          0.019   PREDICTED: hypothetical protein XP_002345611 
FLJ22184              0.019   PREDICTED: hypothetical protein FLJ22184 
LOC100287807          0.019   PREDICTED: hypothetical protein 
FLJ22184              0.019   PREDICTED: hypothetical protein LOC80164 
LOC100287807          0.019   PREDICTED: hypothetical protein XP_002342309 
CEP68                 0.019   centrosomal protein 68kDa 
VWCE                  0.019   von Willebrand factor C and EGF domains 
LOC100291808          0.019   PREDICTED: hypothetical protein XP_002345696 
LOC100287203          0.019   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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