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Search of human proteins with 239747823
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239747823 PREDICTED: hypothetical protein XP_002348330 [Homo
sapiens]
(444 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239747823 PREDICTED: hypothetical protein XP_002348330 [Homo ... 928 0.0
gi|239753264 PREDICTED: hypothetical protein [Homo sapiens] 925 0.0
gi|239741693 PREDICTED: hypothetical protein XP_002342282 [Homo ... 922 0.0
gi|18702331 OTU domain containing 7A [Homo sapiens] 34 0.23
gi|239754993 PREDICTED: hypothetical protein [Homo sapiens] 33 0.68
gi|169213725 PREDICTED: hypothetical protein [Homo sapiens] 32 0.89
gi|169214202 PREDICTED: hypothetical protein [Homo sapiens] 32 0.89
gi|169213543 PREDICTED: hypothetical protein [Homo sapiens] 32 0.89
gi|190014636 hypothetical protein LOC286262 isoform 2 [Homo sapi... 32 0.89
gi|190014638 hypothetical protein LOC286262 isoform 1 [Homo sapi... 32 0.89
gi|67188445 CTD (carboxy-terminal domain, RNA polymerase II, pol... 32 1.2
gi|239756691 PREDICTED: hypothetical protein [Homo sapiens] 32 1.2
gi|239751188 PREDICTED: hypothetical protein XP_002347742 [Homo ... 32 1.2
gi|239745676 PREDICTED: hypothetical protein XP_002343540 [Homo ... 32 1.2
gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens] 32 1.2
gi|239750958 PREDICTED: hypothetical protein XP_002347630 [Homo ... 32 1.5
gi|239745364 PREDICTED: hypothetical protein XP_002343480 [Homo ... 32 1.5
gi|122937219 F-box protein 41 [Homo sapiens] 32 1.5
gi|145309328 papilin [Homo sapiens] 32 1.5
gi|38569493 potassium voltage-gated channel, subfamily H (eag-re... 31 2.0
gi|51093859 calcium channel, voltage-dependent, T type, alpha 1I... 31 2.6
gi|21361077 calcium channel, voltage-dependent, T type, alpha 1I... 31 2.6
gi|239752201 PREDICTED: hypothetical protein XP_002348147 [Homo ... 30 3.4
gi|239747819 PREDICTED: hypothetical protein XP_002348329 [Homo ... 30 3.4
gi|239741689 PREDICTED: hypothetical protein XP_002342281 [Homo ... 30 3.4
gi|222537747 hypothetical protein LOC342979 [Homo sapiens] 30 4.4
gi|27437015 calcium/calmodulin-dependent protein kinase kinase 2... 30 4.4
gi|27437025 calcium/calmodulin-dependent protein kinase kinase 2... 30 4.4
gi|239758013 PREDICTED: hypothetical protein [Homo sapiens] 30 4.4
gi|239756441 PREDICTED: hypothetical protein LOC388199 [Homo sap... 30 4.4
>gi|239747823 PREDICTED: hypothetical protein XP_002348330 [Homo
sapiens]
Length = 444
Score = 928 bits (2399), Expect = 0.0
Identities = 444/444 (100%), Positives = 444/444 (100%)
Query: 1 MALGRRAGSSDDDKDDDNSDITEHGREPRKAVLLVVVHHVFGDLLNGRKCSWEVNGKEGR 60
MALGRRAGSSDDDKDDDNSDITEHGREPRKAVLLVVVHHVFGDLLNGRKCSWEVNGKEGR
Sbjct: 1 MALGRRAGSSDDDKDDDNSDITEHGREPRKAVLLVVVHHVFGDLLNGRKCSWEVNGKEGR 60
Query: 61 LAAPVRPLEKGMSLPHLYLGPHVPHVCMTSPPPISKFRSLNFNCFCQQDERVKKSFWESI 120
LAAPVRPLEKGMSLPHLYLGPHVPHVCMTSPPPISKFRSLNFNCFCQQDERVKKSFWESI
Sbjct: 61 LAAPVRPLEKGMSLPHLYLGPHVPHVCMTSPPPISKFRSLNFNCFCQQDERVKKSFWESI 120
Query: 121 SQLEETDDFREEGEGAGVEMLAVPTPGNGPNWAKSAIRGRSLHANRTPNTSNTYSTLRLG 180
SQLEETDDFREEGEGAGVEMLAVPTPGNGPNWAKSAIRGRSLHANRTPNTSNTYSTLRLG
Sbjct: 121 SQLEETDDFREEGEGAGVEMLAVPTPGNGPNWAKSAIRGRSLHANRTPNTSNTYSTLRLG 180
Query: 181 ENAREAGLWNVMLTDARSSFTAPSHRQAKLSKHHMPLAHSGSQVKRLQAPGQGSPPRLYS 240
ENAREAGLWNVMLTDARSSFTAPSHRQAKLSKHHMPLAHSGSQVKRLQAPGQGSPPRLYS
Sbjct: 181 ENAREAGLWNVMLTDARSSFTAPSHRQAKLSKHHMPLAHSGSQVKRLQAPGQGSPPRLYS 240
Query: 241 VSPSHCREGDREASWWLCECGALGMSDRVGDYNHQHREPEETKEGGLGVGEPPKDKLGDR 300
VSPSHCREGDREASWWLCECGALGMSDRVGDYNHQHREPEETKEGGLGVGEPPKDKLGDR
Sbjct: 241 VSPSHCREGDREASWWLCECGALGMSDRVGDYNHQHREPEETKEGGLGVGEPPKDKLGDR 300
Query: 301 SVREILQGIIPADVSDEFQALHVDQGLNELAVWKLLPSWLQAGNLSGSTLHPEREHQDDH 360
SVREILQGIIPADVSDEFQALHVDQGLNELAVWKLLPSWLQAGNLSGSTLHPEREHQDDH
Sbjct: 301 SVREILQGIIPADVSDEFQALHVDQGLNELAVWKLLPSWLQAGNLSGSTLHPEREHQDDH 360
Query: 361 PLPHRVLVSSSHPTGAALVRVLRLLPWPWGRRAGRASPGLWAKRAGSWELGRPAPPCPEA 420
PLPHRVLVSSSHPTGAALVRVLRLLPWPWGRRAGRASPGLWAKRAGSWELGRPAPPCPEA
Sbjct: 361 PLPHRVLVSSSHPTGAALVRVLRLLPWPWGRRAGRASPGLWAKRAGSWELGRPAPPCPEA 420
Query: 421 SAPRPVGSRDVAAAAAEVRKTPAR 444
SAPRPVGSRDVAAAAAEVRKTPAR
Sbjct: 421 SAPRPVGSRDVAAAAAEVRKTPAR 444
>gi|239753264 PREDICTED: hypothetical protein [Homo sapiens]
Length = 480
Score = 925 bits (2390), Expect = 0.0
Identities = 442/442 (100%), Positives = 442/442 (100%)
Query: 1 MALGRRAGSSDDDKDDDNSDITEHGREPRKAVLLVVVHHVFGDLLNGRKCSWEVNGKEGR 60
MALGRRAGSSDDDKDDDNSDITEHGREPRKAVLLVVVHHVFGDLLNGRKCSWEVNGKEGR
Sbjct: 1 MALGRRAGSSDDDKDDDNSDITEHGREPRKAVLLVVVHHVFGDLLNGRKCSWEVNGKEGR 60
Query: 61 LAAPVRPLEKGMSLPHLYLGPHVPHVCMTSPPPISKFRSLNFNCFCQQDERVKKSFWESI 120
LAAPVRPLEKGMSLPHLYLGPHVPHVCMTSPPPISKFRSLNFNCFCQQDERVKKSFWESI
Sbjct: 61 LAAPVRPLEKGMSLPHLYLGPHVPHVCMTSPPPISKFRSLNFNCFCQQDERVKKSFWESI 120
Query: 121 SQLEETDDFREEGEGAGVEMLAVPTPGNGPNWAKSAIRGRSLHANRTPNTSNTYSTLRLG 180
SQLEETDDFREEGEGAGVEMLAVPTPGNGPNWAKSAIRGRSLHANRTPNTSNTYSTLRLG
Sbjct: 121 SQLEETDDFREEGEGAGVEMLAVPTPGNGPNWAKSAIRGRSLHANRTPNTSNTYSTLRLG 180
Query: 181 ENAREAGLWNVMLTDARSSFTAPSHRQAKLSKHHMPLAHSGSQVKRLQAPGQGSPPRLYS 240
ENAREAGLWNVMLTDARSSFTAPSHRQAKLSKHHMPLAHSGSQVKRLQAPGQGSPPRLYS
Sbjct: 181 ENAREAGLWNVMLTDARSSFTAPSHRQAKLSKHHMPLAHSGSQVKRLQAPGQGSPPRLYS 240
Query: 241 VSPSHCREGDREASWWLCECGALGMSDRVGDYNHQHREPEETKEGGLGVGEPPKDKLGDR 300
VSPSHCREGDREASWWLCECGALGMSDRVGDYNHQHREPEETKEGGLGVGEPPKDKLGDR
Sbjct: 241 VSPSHCREGDREASWWLCECGALGMSDRVGDYNHQHREPEETKEGGLGVGEPPKDKLGDR 300
Query: 301 SVREILQGIIPADVSDEFQALHVDQGLNELAVWKLLPSWLQAGNLSGSTLHPEREHQDDH 360
SVREILQGIIPADVSDEFQALHVDQGLNELAVWKLLPSWLQAGNLSGSTLHPEREHQDDH
Sbjct: 301 SVREILQGIIPADVSDEFQALHVDQGLNELAVWKLLPSWLQAGNLSGSTLHPEREHQDDH 360
Query: 361 PLPHRVLVSSSHPTGAALVRVLRLLPWPWGRRAGRASPGLWAKRAGSWELGRPAPPCPEA 420
PLPHRVLVSSSHPTGAALVRVLRLLPWPWGRRAGRASPGLWAKRAGSWELGRPAPPCPEA
Sbjct: 361 PLPHRVLVSSSHPTGAALVRVLRLLPWPWGRRAGRASPGLWAKRAGSWELGRPAPPCPEA 420
Query: 421 SAPRPVGSRDVAAAAAEVRKTP 442
SAPRPVGSRDVAAAAAEVRKTP
Sbjct: 421 SAPRPVGSRDVAAAAAEVRKTP 442
>gi|239741693 PREDICTED: hypothetical protein XP_002342282 [Homo
sapiens]
Length = 480
Score = 922 bits (2383), Expect = 0.0
Identities = 441/442 (99%), Positives = 441/442 (99%)
Query: 1 MALGRRAGSSDDDKDDDNSDITEHGREPRKAVLLVVVHHVFGDLLNGRKCSWEVNGKEGR 60
MALGRRAGSSDDDKDDDNSDITEHGREPRKAVLLVVVHHVFGDLLNGRKCSWEVNGKEGR
Sbjct: 1 MALGRRAGSSDDDKDDDNSDITEHGREPRKAVLLVVVHHVFGDLLNGRKCSWEVNGKEGR 60
Query: 61 LAAPVRPLEKGMSLPHLYLGPHVPHVCMTSPPPISKFRSLNFNCFCQQDERVKKSFWESI 120
LAAPVRPLEKGMSLPHLYLGPHVPHVCMTSPPPISKFRSLNFNCFCQQDERVKKSFWESI
Sbjct: 61 LAAPVRPLEKGMSLPHLYLGPHVPHVCMTSPPPISKFRSLNFNCFCQQDERVKKSFWESI 120
Query: 121 SQLEETDDFREEGEGAGVEMLAVPTPGNGPNWAKSAIRGRSLHANRTPNTSNTYSTLRLG 180
SQLEETDDFREEGEGAGVEMLAVPTPGNGPNWAKSAIRGRSLHANRTPNTSNTYSTLRLG
Sbjct: 121 SQLEETDDFREEGEGAGVEMLAVPTPGNGPNWAKSAIRGRSLHANRTPNTSNTYSTLRLG 180
Query: 181 ENAREAGLWNVMLTDARSSFTAPSHRQAKLSKHHMPLAHSGSQVKRLQAPGQGSPPRLYS 240
ENAREAGLWNVMLTDARSSFTAPSHRQAKLSKHHMPLAHSGSQVKRLQAPGQGSPPRLYS
Sbjct: 181 ENAREAGLWNVMLTDARSSFTAPSHRQAKLSKHHMPLAHSGSQVKRLQAPGQGSPPRLYS 240
Query: 241 VSPSHCREGDREASWWLCECGALGMSDRVGDYNHQHREPEETKEGGLGVGEPPKDKLGDR 300
VSPSHCREGDREASWWLCECGALGMSDRVGDYNHQHREPEETKEGGLGVGEPPKDKLGDR
Sbjct: 241 VSPSHCREGDREASWWLCECGALGMSDRVGDYNHQHREPEETKEGGLGVGEPPKDKLGDR 300
Query: 301 SVREILQGIIPADVSDEFQALHVDQGLNELAVWKLLPSWLQAGNLSGSTLHPEREHQDDH 360
SVREILQGIIPADVSDEFQALHVDQGLNELAVWKLLPSWLQAGNLSGSTLHPEREHQDDH
Sbjct: 301 SVREILQGIIPADVSDEFQALHVDQGLNELAVWKLLPSWLQAGNLSGSTLHPEREHQDDH 360
Query: 361 PLPHRVLVSSSHPTGAALVRVLRLLPWPWGRRAGRASPGLWAKRAGSWELGRPAPPCPEA 420
PLPHRVL SSSHPTGAALVRVLRLLPWPWGRRAGRASPGLWAKRAGSWELGRPAPPCPEA
Sbjct: 361 PLPHRVLGSSSHPTGAALVRVLRLLPWPWGRRAGRASPGLWAKRAGSWELGRPAPPCPEA 420
Query: 421 SAPRPVGSRDVAAAAAEVRKTP 442
SAPRPVGSRDVAAAAAEVRKTP
Sbjct: 421 SAPRPVGSRDVAAAAAEVRKTP 442
>gi|18702331 OTU domain containing 7A [Homo sapiens]
Length = 926
Score = 34.3 bits (77), Expect = 0.23
Identities = 30/95 (31%), Positives = 35/95 (36%), Gaps = 12/95 (12%)
Query: 352 PEREHQDDHPLPHRVLVSSSHPTGAALVRVLRLLPWPWGRRAGRASPGLWAKRAGSWELG 411
P R + P+P R S PT L R P P RA RA+ G A G
Sbjct: 695 PRRPETEGVPVPERA--SPGPPTQLVLKLKERPSPGPAAGRAARAAAGGTASPGGGARRA 752
Query: 412 RPAPPCPEASAPRPV----------GSRDVAAAAA 436
+ P P S P P G+RD A A A
Sbjct: 753 SASGPVPGRSPPAPARQSVIHVQASGARDEACAPA 787
>gi|239754993 PREDICTED: hypothetical protein [Homo sapiens]
Length = 221
Score = 32.7 bits (73), Expect = 0.68
Identities = 21/58 (36%), Positives = 25/58 (43%), Gaps = 9/58 (15%)
Query: 361 PLPHRVLVSSSHPTGAALVRVLRLLPWPWGRRAGRASPG--LWAKRAGSWELGRPAPP 416
P PH SHP L + WP + + R SPG LW +R W L RP P
Sbjct: 137 PAPH------SHPPPIGLALACKSRRWPRAQPS-RMSPGPPLWERRQSYWPLTRPLGP 187
>gi|169213725 PREDICTED: hypothetical protein [Homo sapiens]
Length = 131
Score = 32.3 bits (72), Expect = 0.89
Identities = 24/66 (36%), Positives = 30/66 (45%), Gaps = 6/66 (9%)
Query: 363 PHRVLVSSSHPTGAALVRVLRLLPWPWGRRAGRA-SPGLWAKRAGSWELGRPAPPCPEAS 421
P+ V S P+G R+L L W WGR AG + S G W G W L R A
Sbjct: 41 PYPVPPSEGCPSG----RLLLSLHWDWGRGAGGSWSGGAWPGSPG-WRLARGPAHGASAE 95
Query: 422 APRPVG 427
+ P+G
Sbjct: 96 SLGPLG 101
>gi|169214202 PREDICTED: hypothetical protein [Homo sapiens]
Length = 131
Score = 32.3 bits (72), Expect = 0.89
Identities = 24/66 (36%), Positives = 30/66 (45%), Gaps = 6/66 (9%)
Query: 363 PHRVLVSSSHPTGAALVRVLRLLPWPWGRRAGRA-SPGLWAKRAGSWELGRPAPPCPEAS 421
P+ V S P+G R+L L W WGR AG + S G W G W L R A
Sbjct: 41 PYPVPPSEGCPSG----RLLLSLHWDWGRGAGGSWSGGAWPGSPG-WRLARGPAHGASAE 95
Query: 422 APRPVG 427
+ P+G
Sbjct: 96 SLGPLG 101
>gi|169213543 PREDICTED: hypothetical protein [Homo sapiens]
Length = 131
Score = 32.3 bits (72), Expect = 0.89
Identities = 24/66 (36%), Positives = 30/66 (45%), Gaps = 6/66 (9%)
Query: 363 PHRVLVSSSHPTGAALVRVLRLLPWPWGRRAGRA-SPGLWAKRAGSWELGRPAPPCPEAS 421
P+ V S P+G R+L L W WGR AG + S G W G W L R A
Sbjct: 41 PYPVPPSEGCPSG----RLLLSLHWDWGRGAGGSWSGGAWPGSPG-WRLARGPAHGASAE 95
Query: 422 APRPVG 427
+ P+G
Sbjct: 96 SLGPLG 101
>gi|190014636 hypothetical protein LOC286262 isoform 2 [Homo
sapiens]
Length = 678
Score = 32.3 bits (72), Expect = 0.89
Identities = 21/56 (37%), Positives = 25/56 (44%), Gaps = 5/56 (8%)
Query: 375 GAALVRVLRLL-----PWPWGRRAGRASPGLWAKRAGSWELGRPAPPCPEASAPRP 425
GAA +R +L P R R P +R GS E RP PP P + PRP
Sbjct: 53 GAAQIRAAEVLVYGAPPGRVSRLLERFDPPAAPRRRGSPERARPPPPPPPPAPPRP 108
>gi|190014638 hypothetical protein LOC286262 isoform 1 [Homo
sapiens]
Length = 650
Score = 32.3 bits (72), Expect = 0.89
Identities = 21/56 (37%), Positives = 25/56 (44%), Gaps = 5/56 (8%)
Query: 375 GAALVRVLRLL-----PWPWGRRAGRASPGLWAKRAGSWELGRPAPPCPEASAPRP 425
GAA +R +L P R R P +R GS E RP PP P + PRP
Sbjct: 53 GAAQIRAAEVLVYGAPPGRVSRLLERFDPPAAPRRRGSPERARPPPPPPPPAPPRP 108
>gi|67188445 CTD (carboxy-terminal domain, RNA polymerase II,
polypeptide A) phosphatase, subunit 1 isoform FCP1a
[Homo sapiens]
Length = 961
Score = 32.0 bits (71), Expect = 1.2
Identities = 35/138 (25%), Positives = 51/138 (36%), Gaps = 17/138 (12%)
Query: 171 SNTYSTLRLGENAREAGLWNVMLTDARSSFTAPSHRQAKLSKHHMPLAHSGSQ---VKRL 227
SNT +R G A ++ + SSF A Q ++ +P A G Q +R
Sbjct: 776 SNTGKLIRTGARGPPAPSSSLPIRQEPSSFRAVPPPQPQMFGEELPDAQDGEQPGPSRRK 835
Query: 228 QAPGQGSPPRLYSVSPSHCREGDREASWWLCECGALGMSDRVGDYNHQHREPEETKEGGL 287
+ P LY++ D+E L E D + + R PEE +E
Sbjct: 836 RQPSMSETMPLYTLCKEDLESMDKEVDDILGEGS--------DDSDSEKRRPEEQEE--- 884
Query: 288 GVGEPPKDKLGDRSVREI 305
EP K G R R +
Sbjct: 885 ---EPQPRKPGTRRERTL 899
>gi|239756691 PREDICTED: hypothetical protein [Homo sapiens]
Length = 319
Score = 32.0 bits (71), Expect = 1.2
Identities = 25/96 (26%), Positives = 38/96 (39%), Gaps = 19/96 (19%)
Query: 352 PEREHQDDHPLPHRVLVSSSHPTGAALVRVLRLLP----------WPWGRRAGRASPG-- 399
P + H PLPH+ + G+ +++ L L+P PW R + A PG
Sbjct: 31 PHKPHPAPQPLPHQARDLAGEQEGSRVLQQLLLVPNFILAGLRETNPWRRESREAEPGSG 90
Query: 400 ----LW---AKRAGSWELGRPAPPCPEASAPRPVGS 428
W KR+ + +P P P + A GS
Sbjct: 91 KTNAAWRWRGKRSDGGQTHQPQGPRPPSEALALEGS 126
>gi|239751188 PREDICTED: hypothetical protein XP_002347742 [Homo
sapiens]
Length = 319
Score = 32.0 bits (71), Expect = 1.2
Identities = 25/96 (26%), Positives = 38/96 (39%), Gaps = 19/96 (19%)
Query: 352 PEREHQDDHPLPHRVLVSSSHPTGAALVRVLRLLP----------WPWGRRAGRASPG-- 399
P + H PLPH+ + G+ +++ L L+P PW R + A PG
Sbjct: 31 PHKPHPAPQPLPHQARDLAGEQEGSRVLQQLLLVPNFILAGLRETNPWRRESREAEPGSG 90
Query: 400 ----LW---AKRAGSWELGRPAPPCPEASAPRPVGS 428
W KR+ + +P P P + A GS
Sbjct: 91 KTNAAWGWRGKRSDGGQTHQPQGPRPPSEALALEGS 126
>gi|239745676 PREDICTED: hypothetical protein XP_002343540 [Homo
sapiens]
Length = 319
Score = 32.0 bits (71), Expect = 1.2
Identities = 25/96 (26%), Positives = 38/96 (39%), Gaps = 19/96 (19%)
Query: 352 PEREHQDDHPLPHRVLVSSSHPTGAALVRVLRLLP----------WPWGRRAGRASPG-- 399
P + H PLPH+ + G+ +++ L L+P PW R + A PG
Sbjct: 31 PHKPHPAPQPLPHQARDLAGEQEGSRVLQQLLLVPNFILAGLRETNPWRRESREAEPGSG 90
Query: 400 ----LW---AKRAGSWELGRPAPPCPEASAPRPVGS 428
W KR+ + +P P P + A GS
Sbjct: 91 KTNAAWRWRGKRSDGGQTHQPQGPRPPSEALALEGS 126
>gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens]
Length = 538
Score = 32.0 bits (71), Expect = 1.2
Identities = 20/49 (40%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Query: 394 GRASPGLWAKRAGSWELGRPAPPCPEASAPRPVGSRDVAAAAAEVRKTP 442
G A PG A+RA PAP P A AP P G R A R+ P
Sbjct: 163 GPAQPGPRAQRAAPLAAPPPAPAAPPAVAP-PAGPRRAPPPAVAAREPP 210
>gi|239750958 PREDICTED: hypothetical protein XP_002347630 [Homo
sapiens]
Length = 229
Score = 31.6 bits (70), Expect = 1.5
Identities = 31/90 (34%), Positives = 40/90 (44%), Gaps = 5/90 (5%)
Query: 348 STLHPEREHQDDHPLPHRVLVSSSHPTGAALVRVLRLLPWPWGRRAGRASPGLWAKRAGS 407
S L P HQ P P L +S+ G+ LRL GR AG ASP + R+
Sbjct: 2 SPLRPRGPHQGGTPRP---LPASAGAQGSQARSGLRLCRTTQGRPAGGASPPP-SPRSRP 57
Query: 408 WELGRPAPPCPEASAPRPVGSRDVAAAAAE 437
G P P P A P+ + S V+A A+
Sbjct: 58 EGPGPPRPATPSARRPQGL-SAGVSAGPAQ 86
>gi|239745364 PREDICTED: hypothetical protein XP_002343480 [Homo
sapiens]
Length = 229
Score = 31.6 bits (70), Expect = 1.5
Identities = 31/90 (34%), Positives = 40/90 (44%), Gaps = 5/90 (5%)
Query: 348 STLHPEREHQDDHPLPHRVLVSSSHPTGAALVRVLRLLPWPWGRRAGRASPGLWAKRAGS 407
S L P HQ P P L +S+ G+ LRL GR AG ASP + R+
Sbjct: 2 SPLRPRGPHQGGTPRP---LPASAGAQGSQARSGLRLCRTTQGRPAGGASPPP-SPRSRP 57
Query: 408 WELGRPAPPCPEASAPRPVGSRDVAAAAAE 437
G P P P A P+ + S V+A A+
Sbjct: 58 EGPGPPRPATPSARRPQGL-SAGVSAGPAQ 86
>gi|122937219 F-box protein 41 [Homo sapiens]
Length = 936
Score = 31.6 bits (70), Expect = 1.5
Identities = 30/94 (31%), Positives = 36/94 (38%), Gaps = 16/94 (17%)
Query: 354 REHQDDHPLPHRVLVS---SSHPTGAALVRVLRLLPWPWGRRAGRASPGLWAKRAGSWEL 410
REH +P+ VS SS TGA+ R AS + S EL
Sbjct: 439 REHHVGPAVPNTYAVSRHGSSPSTGAS-------------SRVPAASQSSGCYDSDSLEL 485
Query: 411 GRPAPPCPEASAPRPVGSRDVAAAAAEVRKTPAR 444
RP PE S P +G+R AA R P R
Sbjct: 486 PRPEEGAPEDSGPGGLGTRAQAANGGSERSQPPR 519
>gi|145309328 papilin [Homo sapiens]
Length = 1251
Score = 31.6 bits (70), Expect = 1.5
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 6/35 (17%)
Query: 387 WPWGRRAGRASPGLWAKRAGSWELGRPAPPCPEAS 421
WPWG+ G +PGL + G PAPP +S
Sbjct: 851 WPWGQELGSRAPGL------GGDAGSPAPPFHSSS 879
>gi|38569493 potassium voltage-gated channel, subfamily H
(eag-related), member 3 [Homo sapiens]
Length = 1083
Score = 31.2 bits (69), Expect = 2.0
Identities = 15/46 (32%), Positives = 20/46 (43%), Gaps = 8/46 (17%)
Query: 384 LLPWPWGRRAGRASPGLWAKRAGSWELGRPAPP------CPEASAP 423
+ PWPWG A ++SP W + W + P C E S P
Sbjct: 972 MAPWPWGPPASQSSP--WPRATAFWTSTSDSEPPASGDLCSEPSTP 1015
>gi|51093859 calcium channel, voltage-dependent, T type, alpha 1I
subunit isoform b [Homo sapiens]
Length = 2188
Score = 30.8 bits (68), Expect = 2.6
Identities = 21/54 (38%), Positives = 23/54 (42%), Gaps = 10/54 (18%)
Query: 388 PWGRRAGRASPGLWAKRAGSWELGRPAPPCPE----ASAPRPVGSRDVAAAAAE 437
PWGR A WA R SW + PP E SA R G+R AA E
Sbjct: 942 PWGRSAA------WASRRSSWNSLKHKPPSAEHESLLSAERGGGARVCEVAADE 989
>gi|21361077 calcium channel, voltage-dependent, T type, alpha 1I
subunit isoform a [Homo sapiens]
Length = 2223
Score = 30.8 bits (68), Expect = 2.6
Identities = 21/54 (38%), Positives = 23/54 (42%), Gaps = 10/54 (18%)
Query: 388 PWGRRAGRASPGLWAKRAGSWELGRPAPPCPE----ASAPRPVGSRDVAAAAAE 437
PWGR A WA R SW + PP E SA R G+R AA E
Sbjct: 977 PWGRSAA------WASRRSSWNSLKHKPPSAEHESLLSAERGGGARVCEVAADE 1024
>gi|239752201 PREDICTED: hypothetical protein XP_002348147 [Homo
sapiens]
Length = 935
Score = 30.4 bits (67), Expect = 3.4
Identities = 32/100 (32%), Positives = 39/100 (39%), Gaps = 4/100 (4%)
Query: 341 QAGNLSGSTLH---PEREHQDDHPLPHRVLVSSSHPTGAALVRVLRLLPWPWGRR-AGRA 396
Q G SGS PER +D R ++ S G A + R + GRR AG
Sbjct: 767 QPGPGSGSGAERAGPERRARDTQTRTRRDKLTDSARGGRARLTAGRRVRRESGRRRAGAT 826
Query: 397 SPGLWAKRAGSWELGRPAPPCPEASAPRPVGSRDVAAAAA 436
S G + A G P P SA RP AA +A
Sbjct: 827 SQGAIRRAASRARKGESRRPLPANSAGRPALPSPAAARSA 866
>gi|239747819 PREDICTED: hypothetical protein XP_002348329 [Homo
sapiens]
Length = 183
Score = 30.4 bits (67), Expect = 3.4
Identities = 16/51 (31%), Positives = 22/51 (43%)
Query: 206 RQAKLSKHHMPLAHSGSQVKRLQAPGQGSPPRLYSVSPSHCREGDREASWW 256
R A + +PL HS +Q ++ G GS PR+ E R WW
Sbjct: 17 RAAPGGRKGIPLLHSDAQSLDMRDDGGGSSPRVGGAQGEGREERKRRRRWW 67
>gi|239741689 PREDICTED: hypothetical protein XP_002342281 [Homo
sapiens]
Length = 183
Score = 30.4 bits (67), Expect = 3.4
Identities = 16/51 (31%), Positives = 22/51 (43%)
Query: 206 RQAKLSKHHMPLAHSGSQVKRLQAPGQGSPPRLYSVSPSHCREGDREASWW 256
R A + +PL HS +Q ++ G GS PR+ E R WW
Sbjct: 17 RAAPGGRKGIPLLHSDAQSLDMRDDGGGSSPRVGGAQGEGREERKRRRRWW 67
>gi|222537747 hypothetical protein LOC342979 [Homo sapiens]
Length = 673
Score = 30.0 bits (66), Expect = 4.4
Identities = 38/148 (25%), Positives = 58/148 (39%), Gaps = 18/148 (12%)
Query: 207 QAKLSKHHMPLAHSGSQVKRLQAPGQGSPPRLYSVSPSHCREGDREASWWLCECGALGMS 266
QA++ L SQ++ LQ+ G+ + S PS R+G R S + E G++G +
Sbjct: 78 QARIRNLEDSLFTLQSQLQLLQSASTGAQHKP-SGRPSWRRQGHRPLSQSIVEAGSVGQT 136
Query: 267 D-------RVGDYNHQHREPEETKEGGLGVGEPPKDKLGDRSVREILQGIIPADVSDEFQ 319
D G P E +E LG P+ G G P+ +
Sbjct: 137 DLNKRASLPAGLVGTPPESPSEPREDVLGFLPGPRQVPGAAGDSSEANGPCPSPIPTP-- 194
Query: 320 ALHVDQGLNELAVWKLLPSWLQAGNLSG 347
+QGL++ AV PS + G G
Sbjct: 195 ----EQGLSQRAV----PSEGRVGEAKG 214
>gi|27437015 calcium/calmodulin-dependent protein kinase kinase 2
beta isoform 1 [Homo sapiens]
Length = 588
Score = 30.0 bits (66), Expect = 4.4
Identities = 17/56 (30%), Positives = 22/56 (39%)
Query: 193 LTDARSSFTAPSHRQAKLSKHHMPLAHSGSQVKRLQAPGQGSPPRLYSVSPSHCRE 248
L +AR P HR A L V+ AP GSP R++ + P E
Sbjct: 531 LKEARQRRQPPGHRPAPRGGGGSALVRGSPCVESCWAPAPGSPARMHPLRPEEAME 586
>gi|27437025 calcium/calmodulin-dependent protein kinase kinase 2
beta isoform 3 [Homo sapiens]
Length = 545
Score = 30.0 bits (66), Expect = 4.4
Identities = 17/56 (30%), Positives = 22/56 (39%)
Query: 193 LTDARSSFTAPSHRQAKLSKHHMPLAHSGSQVKRLQAPGQGSPPRLYSVSPSHCRE 248
L +AR P HR A L V+ AP GSP R++ + P E
Sbjct: 488 LKEARQRRQPPGHRPAPRGGGGSALVRGSPCVESCWAPAPGSPARMHPLRPEEAME 543
>gi|239758013 PREDICTED: hypothetical protein [Homo sapiens]
Length = 819
Score = 30.0 bits (66), Expect = 4.4
Identities = 24/66 (36%), Positives = 27/66 (40%), Gaps = 7/66 (10%)
Query: 383 RLLPWPWGRRAGRASPGLWAKRAGSWELGRPAPPCPEASAPRPVGSRDVAAAA----AEV 438
R PW G++ A+ WA A S G P P GS AAAA AE
Sbjct: 629 RKKPWRRGQKDAAAAEKAWATGATSRGSGGKQ---PRWQKPAAAGSESSAAAAVGQEAEA 685
Query: 439 RKTPAR 444
RK P R
Sbjct: 686 RKKPRR 691
>gi|239756441 PREDICTED: hypothetical protein LOC388199 [Homo
sapiens]
Length = 373
Score = 30.0 bits (66), Expect = 4.4
Identities = 31/111 (27%), Positives = 40/111 (36%), Gaps = 21/111 (18%)
Query: 339 WLQAG--NLSGSTLHPEREHQDDHPLPHR----VLVSSSHPTGA-ALVRVLRLLPWPWGR 391
W Q G N G+ HP HP+ HR +L+ TG A R + L PW G
Sbjct: 15 WGQPGHPNTGGAAAHPTY-----HPMGHRPRTCILLRGDQTTGGQAPSREISLGPWAAGT 69
Query: 392 RAGRASPGLWAKRAGSWELGRPAPPCPEASAPRPVGSRDVAAAAAEVRKTP 442
S W GR P C ++ +A A EV+ P
Sbjct: 70 HFLAISTTPW---------GRKTPACISELPTSSGTAQPLANAVCEVQTVP 111
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.133 0.422
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,351,487
Number of Sequences: 37866
Number of extensions: 1158557
Number of successful extensions: 4484
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 58
Number of HSP's that attempted gapping in prelim test: 4430
Number of HSP's gapped (non-prelim): 113
length of query: 444
length of database: 18,247,518
effective HSP length: 105
effective length of query: 339
effective length of database: 14,271,588
effective search space: 4838068332
effective search space used: 4838068332
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.