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Search of human proteins with 239747679
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239747679 PREDICTED: hypothetical protein [Homo sapiens]
(174 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239753116 PREDICTED: hypothetical protein [Homo sapiens] 354 2e-98
gi|239747679 PREDICTED: hypothetical protein [Homo sapiens] 354 2e-98
gi|239741548 PREDICTED: hypothetical protein XP_002342234 [Homo ... 354 2e-98
gi|114431216 tumor protein p53 inducible protein 13 [Homo sapiens] 33 0.095
gi|239751080 PREDICTED: hypothetical protein XP_002347700 [Homo ... 33 0.12
gi|239745567 PREDICTED: hypothetical protein XP_002344149 [Homo ... 33 0.12
gi|153791178 ets variant gene 2 [Homo sapiens] 32 0.28
gi|213972634 tumor protein p53 binding protein 1 isoform 2 [Homo... 31 0.47
gi|66346708 membrane associated guanylate kinase, WW and PDZ dom... 31 0.47
gi|74272284 membrane associated guanylate kinase, WW and PDZ dom... 31 0.47
gi|74272282 membrane associated guanylate kinase, WW and PDZ dom... 31 0.47
gi|112382239 desmuslin isoform B [Homo sapiens] 30 0.81
gi|112382237 desmuslin isoform A [Homo sapiens] 30 0.81
gi|122937267 lemur tyrosine kinase 3 [Homo sapiens] 30 1.1
gi|33286436 gametogenetin [Homo sapiens] 30 1.1
gi|239755943 PREDICTED: hypothetical protein [Homo sapiens] 30 1.4
gi|21264565 AT rich interactive domain 1A isoform a [Homo sapiens] 29 1.8
gi|21264575 AT rich interactive domain 1A isoform b [Homo sapiens] 29 1.8
gi|239757793 PREDICTED: hypothetical protein [Homo sapiens] 29 2.3
gi|239756545 PREDICTED: hypothetical protein XP_002344931 [Homo ... 29 2.3
gi|239753123 PREDICTED: kelch-like 29 (Drosophila) [Homo sapiens] 29 2.3
gi|239751065 PREDICTED: hypothetical protein XP_002347692 [Homo ... 29 2.3
gi|239747686 PREDICTED: kelch-like 29 (Drosophila) [Homo sapiens] 29 2.3
gi|239745511 PREDICTED: hypothetical protein XP_002343508 [Homo ... 29 2.3
gi|239741555 PREDICTED: kelch repeat and BTB (POZ) domain contai... 29 2.3
gi|38348304 von Willebrand factor A domain containing 2 [Homo sa... 29 2.3
gi|115583670 T-cell lymphoma invasion and metastasis 1 [Homo sap... 28 3.1
gi|148886716 downstream of Stk11 [Homo sapiens] 28 3.1
gi|239755904 PREDICTED: hypothetical protein XP_002344738 [Homo ... 28 4.0
gi|239753791 PREDICTED: hypothetical protein [Homo sapiens] 28 4.0
>gi|239753116 PREDICTED: hypothetical protein [Homo sapiens]
Length = 174
Score = 354 bits (908), Expect = 2e-98
Identities = 174/174 (100%), Positives = 174/174 (100%)
Query: 1 MGMISLDLLTPLQNLKSTVDLEVSKELARQVTGFLVFLVTKNHSQTPGERASSLSGAGPA 60
MGMISLDLLTPLQNLKSTVDLEVSKELARQVTGFLVFLVTKNHSQTPGERASSLSGAGPA
Sbjct: 1 MGMISLDLLTPLQNLKSTVDLEVSKELARQVTGFLVFLVTKNHSQTPGERASSLSGAGPA 60
Query: 61 VLTEFAAPSSSRDRAGFPSASEGDSQAKAGGGGVRFPRWKEPEANTVWLSPQPGTQCQET 120
VLTEFAAPSSSRDRAGFPSASEGDSQAKAGGGGVRFPRWKEPEANTVWLSPQPGTQCQET
Sbjct: 61 VLTEFAAPSSSRDRAGFPSASEGDSQAKAGGGGVRFPRWKEPEANTVWLSPQPGTQCQET 120
Query: 121 WGWRAGKVPGSLRITRNPEVLSWGIIPKCTRDRLDFLEILRSGDASTEELNCAL 174
WGWRAGKVPGSLRITRNPEVLSWGIIPKCTRDRLDFLEILRSGDASTEELNCAL
Sbjct: 121 WGWRAGKVPGSLRITRNPEVLSWGIIPKCTRDRLDFLEILRSGDASTEELNCAL 174
>gi|239747679 PREDICTED: hypothetical protein [Homo sapiens]
Length = 174
Score = 354 bits (908), Expect = 2e-98
Identities = 174/174 (100%), Positives = 174/174 (100%)
Query: 1 MGMISLDLLTPLQNLKSTVDLEVSKELARQVTGFLVFLVTKNHSQTPGERASSLSGAGPA 60
MGMISLDLLTPLQNLKSTVDLEVSKELARQVTGFLVFLVTKNHSQTPGERASSLSGAGPA
Sbjct: 1 MGMISLDLLTPLQNLKSTVDLEVSKELARQVTGFLVFLVTKNHSQTPGERASSLSGAGPA 60
Query: 61 VLTEFAAPSSSRDRAGFPSASEGDSQAKAGGGGVRFPRWKEPEANTVWLSPQPGTQCQET 120
VLTEFAAPSSSRDRAGFPSASEGDSQAKAGGGGVRFPRWKEPEANTVWLSPQPGTQCQET
Sbjct: 61 VLTEFAAPSSSRDRAGFPSASEGDSQAKAGGGGVRFPRWKEPEANTVWLSPQPGTQCQET 120
Query: 121 WGWRAGKVPGSLRITRNPEVLSWGIIPKCTRDRLDFLEILRSGDASTEELNCAL 174
WGWRAGKVPGSLRITRNPEVLSWGIIPKCTRDRLDFLEILRSGDASTEELNCAL
Sbjct: 121 WGWRAGKVPGSLRITRNPEVLSWGIIPKCTRDRLDFLEILRSGDASTEELNCAL 174
>gi|239741548 PREDICTED: hypothetical protein XP_002342234 [Homo
sapiens]
Length = 174
Score = 354 bits (908), Expect = 2e-98
Identities = 174/174 (100%), Positives = 174/174 (100%)
Query: 1 MGMISLDLLTPLQNLKSTVDLEVSKELARQVTGFLVFLVTKNHSQTPGERASSLSGAGPA 60
MGMISLDLLTPLQNLKSTVDLEVSKELARQVTGFLVFLVTKNHSQTPGERASSLSGAGPA
Sbjct: 1 MGMISLDLLTPLQNLKSTVDLEVSKELARQVTGFLVFLVTKNHSQTPGERASSLSGAGPA 60
Query: 61 VLTEFAAPSSSRDRAGFPSASEGDSQAKAGGGGVRFPRWKEPEANTVWLSPQPGTQCQET 120
VLTEFAAPSSSRDRAGFPSASEGDSQAKAGGGGVRFPRWKEPEANTVWLSPQPGTQCQET
Sbjct: 61 VLTEFAAPSSSRDRAGFPSASEGDSQAKAGGGGVRFPRWKEPEANTVWLSPQPGTQCQET 120
Query: 121 WGWRAGKVPGSLRITRNPEVLSWGIIPKCTRDRLDFLEILRSGDASTEELNCAL 174
WGWRAGKVPGSLRITRNPEVLSWGIIPKCTRDRLDFLEILRSGDASTEELNCAL
Sbjct: 121 WGWRAGKVPGSLRITRNPEVLSWGIIPKCTRDRLDFLEILRSGDASTEELNCAL 174
>gi|114431216 tumor protein p53 inducible protein 13 [Homo sapiens]
Length = 393
Score = 33.5 bits (75), Expect = 0.095
Identities = 23/64 (35%), Positives = 26/64 (40%)
Query: 48 GERASSLSGAGPAVLTEFAAPSSSRDRAGFPSASEGDSQAKAGGGGVRFPRWKEPEANTV 107
G R S SGA L P +R FPSAS G +AK G+ P TV
Sbjct: 193 GPRQPSSSGAKRRRLRAALGPQPTRSALRFPSASPGSLKAKQSMAGIPGRESNAPSVPTV 252
Query: 108 WLSP 111
L P
Sbjct: 253 SLLP 256
>gi|239751080 PREDICTED: hypothetical protein XP_002347700 [Homo
sapiens]
Length = 330
Score = 33.1 bits (74), Expect = 0.12
Identities = 23/67 (34%), Positives = 27/67 (40%), Gaps = 9/67 (13%)
Query: 66 AAPSSSRDRAGFPSASEGDSQAKAGGGGVRFPRWKEPEANT-VWLSPQPGTQCQETWGWR 124
AAP +SR R G + + GG R PR P VWL WG R
Sbjct: 197 AAPLASRGRYG--------RRRRPSSGGCRLPRRFSPRLRIPVWLQALQEASGLGAWGAR 248
Query: 125 AGKVPGS 131
G+ PGS
Sbjct: 249 CGRDPGS 255
>gi|239745567 PREDICTED: hypothetical protein XP_002344149 [Homo
sapiens]
Length = 330
Score = 33.1 bits (74), Expect = 0.12
Identities = 23/67 (34%), Positives = 27/67 (40%), Gaps = 9/67 (13%)
Query: 66 AAPSSSRDRAGFPSASEGDSQAKAGGGGVRFPRWKEPEANT-VWLSPQPGTQCQETWGWR 124
AAP +SR R G + + GG R PR P VWL WG R
Sbjct: 197 AAPLASRGRYG--------RRRRPSSGGCRLPRRFSPRLRIPVWLQALQEASGLGAWGAR 248
Query: 125 AGKVPGS 131
G+ PGS
Sbjct: 249 CGRDPGS 255
>gi|153791178 ets variant gene 2 [Homo sapiens]
Length = 342
Score = 32.0 bits (71), Expect = 0.28
Identities = 28/87 (32%), Positives = 38/87 (43%), Gaps = 13/87 (14%)
Query: 53 SLSGA----GPAVLTEFAAPSSSRDRAG----FPSASEGDS--QAKAGGGGVRFPRWKEP 102
S SGA GPA L P++ + A P A E S +A+A G + P
Sbjct: 101 SWSGASQTLGPAPLGPGPIPAAGSEGAAGQNCVPVAGEATSWSRAQAAGSNTSWDCSVGP 160
Query: 103 EANTVW---LSPQPGTQCQETWGWRAG 126
+ +T W L +P T C +WG AG
Sbjct: 161 DGDTYWGSGLGGEPRTDCTISWGGPAG 187
>gi|213972634 tumor protein p53 binding protein 1 isoform 2 [Homo
sapiens]
Length = 1975
Score = 31.2 bits (69), Expect = 0.47
Identities = 15/45 (33%), Positives = 21/45 (46%)
Query: 38 LVTKNHSQTPGERASSLSGAGPAVLTEFAAPSSSRDRAGFPSASE 82
L+T ++P +R + P EF +P S D G PSA E
Sbjct: 1675 LITSEEERSPAKRGRKSATVKPVGAGEFVSPCESGDNTGEPSALE 1719
>gi|66346708 membrane associated guanylate kinase, WW and PDZ domain
containing 1 isoform b [Homo sapiens]
Length = 1256
Score = 31.2 bits (69), Expect = 0.47
Identities = 24/91 (26%), Positives = 40/91 (43%), Gaps = 7/91 (7%)
Query: 10 TPLQNLKSTVDLEVSKELARQ------VTGFLVFLVTKNHSQTPGERASSLSGAGPAVLT 63
TP+ + +++ ++ A+Q V +VF V K ++ P +S S PA LT
Sbjct: 894 TPVIGKSHQLVVQLMQQAAKQGHVNLTVRRKVVFAVPKTENEVPSPASSHHSSNQPASLT 953
Query: 64 -EFAAPSSSRDRAGFPSASEGDSQAKAGGGG 93
E P S++ S+ G + GGG
Sbjct: 954 EEKRTPQGSQNSLNTVSSGSGSTSGIGSGGG 984
>gi|74272284 membrane associated guanylate kinase, WW and PDZ domain
containing 1 isoform c [Homo sapiens]
Length = 1462
Score = 31.2 bits (69), Expect = 0.47
Identities = 24/91 (26%), Positives = 40/91 (43%), Gaps = 7/91 (7%)
Query: 10 TPLQNLKSTVDLEVSKELARQ------VTGFLVFLVTKNHSQTPGERASSLSGAGPAVLT 63
TP+ + +++ ++ A+Q V +VF V K ++ P +S S PA LT
Sbjct: 866 TPVIGKSHQLVVQLMQQAAKQGHVNLTVRRKVVFAVPKTENEVPSPASSHHSSNQPASLT 925
Query: 64 -EFAAPSSSRDRAGFPSASEGDSQAKAGGGG 93
E P S++ S+ G + GGG
Sbjct: 926 EEKRTPQGSQNSLNTVSSGSGSTSGIGSGGG 956
>gi|74272282 membrane associated guanylate kinase, WW and PDZ domain
containing 1 isoform a [Homo sapiens]
Length = 1287
Score = 31.2 bits (69), Expect = 0.47
Identities = 24/91 (26%), Positives = 40/91 (43%), Gaps = 7/91 (7%)
Query: 10 TPLQNLKSTVDLEVSKELARQ------VTGFLVFLVTKNHSQTPGERASSLSGAGPAVLT 63
TP+ + +++ ++ A+Q V +VF V K ++ P +S S PA LT
Sbjct: 894 TPVIGKSHQLVVQLMQQAAKQGHVNLTVRRKVVFAVPKTENEVPSPASSHHSSNQPASLT 953
Query: 64 -EFAAPSSSRDRAGFPSASEGDSQAKAGGGG 93
E P S++ S+ G + GGG
Sbjct: 954 EEKRTPQGSQNSLNTVSSGSGSTSGIGSGGG 984
>gi|112382239 desmuslin isoform B [Homo sapiens]
Length = 1253
Score = 30.4 bits (67), Expect = 0.81
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
Query: 49 ERASSLSGAGPAVLTEFAAPSSSRDRAGFPSASEGDSQAKAGGGGVRFPRWKEPE 103
+ AS + A +V+ E S SR R+ P + + + A+A G+RF RW E
Sbjct: 1022 DEASEMEKAVESVVRE----SLSRQRSPAPGSPDEEGGAEAPAAGIRFRRWATRE 1072
>gi|112382237 desmuslin isoform A [Homo sapiens]
Length = 1565
Score = 30.4 bits (67), Expect = 0.81
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
Query: 49 ERASSLSGAGPAVLTEFAAPSSSRDRAGFPSASEGDSQAKAGGGGVRFPRWKEPE 103
+ AS + A +V+ E S SR R+ P + + + A+A G+RF RW E
Sbjct: 1022 DEASEMEKAVESVVRE----SLSRQRSPAPGSPDEEGGAEAPAAGIRFRRWATRE 1072
>gi|122937267 lemur tyrosine kinase 3 [Homo sapiens]
Length = 1489
Score = 30.0 bits (66), Expect = 1.1
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 92 GGVRFPRWKE-PEANTVWLSPQPGTQCQETWG 122
GG+RFPR E P W +P P + E+WG
Sbjct: 1036 GGLRFPRNTERPPETGPWRAPGPWEKTPESWG 1067
Score = 28.1 bits (61), Expect = 4.0
Identities = 25/90 (27%), Positives = 39/90 (43%), Gaps = 7/90 (7%)
Query: 45 QTPGERASSLSGAGPAVLTEFAAPSSSRDRAGFPSASEGDSQAKAGGGGVRFPRWKEPEA 104
+ PG + GPA AP +S +RA PSA ++ GG P P+
Sbjct: 1054 RAPGPWEKTPESWGPAPTIGEPAPETSLERAPAPSAV---VSSRNGGETAPGPLGPAPKN 1110
Query: 105 NTVWLSPQPGTQCQETWGWRAGKVPGSLRI 134
T+ +PGT+ + A + PG+ R+
Sbjct: 1111 GTL----EPGTERRAPETGGAPRAPGAGRL 1136
>gi|33286436 gametogenetin [Homo sapiens]
Length = 652
Score = 30.0 bits (66), Expect = 1.1
Identities = 19/70 (27%), Positives = 23/70 (32%)
Query: 44 SQTPGERASSLSGAGPAVLTEFAAPSSSRDRAGFPSASEGDSQAKAGGGGVRFPRWKEPE 103
S P AS P T F D P E + GGG+ PR +
Sbjct: 323 SGPPSAPASQARALPPPPYTTFPGSKPKFDWVSAPDGPERHFRFNGAGGGIGAPRRRAAA 382
Query: 104 ANTVWLSPQP 113
+ W SP P
Sbjct: 383 LSGPWGSPPP 392
>gi|239755943 PREDICTED: hypothetical protein [Homo sapiens]
Length = 107
Score = 29.6 bits (65), Expect = 1.4
Identities = 15/26 (57%), Positives = 16/26 (61%), Gaps = 3/26 (11%)
Query: 89 AGGGGVRFPRWKEPEANTVWLSPQPG 114
A GGG R R P+A WLSPQPG
Sbjct: 10 AAGGGKRRGR---PQAGARWLSPQPG 32
>gi|21264565 AT rich interactive domain 1A isoform a [Homo sapiens]
Length = 2285
Score = 29.3 bits (64), Expect = 1.8
Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
Query: 46 TPGERASSLSGAGPAVLTEFAAPSSSRDRAGFPSASEGDSQAKAGGGGVRFPRWKEPEAN 105
TPG A++ +G+ P + +A SSS A + G A GGG P P N
Sbjct: 238 TPGSGAAAAAGSKPPPSSSASASSSSSSFAQQRFGAMGGGGPSAAGGGTPQPT-ATPTLN 296
Query: 106 TVWLSP 111
+ SP
Sbjct: 297 QLLTSP 302
>gi|21264575 AT rich interactive domain 1A isoform b [Homo sapiens]
Length = 2068
Score = 29.3 bits (64), Expect = 1.8
Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
Query: 46 TPGERASSLSGAGPAVLTEFAAPSSSRDRAGFPSASEGDSQAKAGGGGVRFPRWKEPEAN 105
TPG A++ +G+ P + +A SSS A + G A GGG P P N
Sbjct: 238 TPGSGAAAAAGSKPPPSSSASASSSSSSFAQQRFGAMGGGGPSAAGGGTPQPT-ATPTLN 296
Query: 106 TVWLSP 111
+ SP
Sbjct: 297 QLLTSP 302
>gi|239757793 PREDICTED: hypothetical protein [Homo sapiens]
Length = 172
Score = 28.9 bits (63), Expect = 2.3
Identities = 21/82 (25%), Positives = 33/82 (40%), Gaps = 6/82 (7%)
Query: 59 PAVLTEFAAPSSSRDRAGFPSASEGDSQAKAGGGGVRFPRWKEPEANTVWLSPQPGTQCQ 118
PA+ F AP + S+ +G G G R W +PE P GT +
Sbjct: 18 PALPPHFRAPGLRVEEGELVSSWQGPYPTAPSGMGARGLGWGDPEKEG---GPSYGTAGE 74
Query: 119 ETWGWRAGKVPGSLRITRNPEV 140
+ WG P R++ +P++
Sbjct: 75 KEWGPPPCPFP---RVSGSPQI 93
>gi|239756545 PREDICTED: hypothetical protein XP_002344931 [Homo
sapiens]
Length = 427
Score = 28.9 bits (63), Expect = 2.3
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 47 PGERASSLSGAG-PAVLTEFAAPSSSRDRAGFPSASEGDSQAKAGGGGVRFPR 98
PG AS++SG+ P +L A + + +AG+ S + A A GG + PR
Sbjct: 212 PGAAASAVSGSWLPIMLESEAGGTDAAGQAGWRSPGKSMGDAAAPGGSLGNPR 264
>gi|239753123 PREDICTED: kelch-like 29 (Drosophila) [Homo sapiens]
Length = 875
Score = 28.9 bits (63), Expect = 2.3
Identities = 21/83 (25%), Positives = 33/83 (39%), Gaps = 5/83 (6%)
Query: 33 GFLVFLVTKNHSQTPGERASSLSGAGPAVLTEFAAPSSSRDRAGFPSASEGDSQAKAGGG 92
G L V + TP + + +T A S+S P S+GDSQ++
Sbjct: 52 GLLPLPVVPSRLPTPATAPAPCTTGSSEAITSLVASSASAVTTKAPGISKGDSQSQGLAT 111
Query: 93 GVRFPRWKEPEAN--TVWLSPQP 113
+ RW + N T W + +P
Sbjct: 112 SI---RWGQTPINQSTPWDTDEP 131
>gi|239751065 PREDICTED: hypothetical protein XP_002347692 [Homo
sapiens]
Length = 537
Score = 28.9 bits (63), Expect = 2.3
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 47 PGERASSLSGAG-PAVLTEFAAPSSSRDRAGFPSASEGDSQAKAGGGGVRFPR 98
PG AS++SG+ P +L A + + +AG+ S + A A GG + PR
Sbjct: 322 PGAAASAVSGSWLPIMLESEAGGTDAAGQAGWRSPGKSMGDAAAPGGSLGNPR 374
>gi|239747686 PREDICTED: kelch-like 29 (Drosophila) [Homo sapiens]
Length = 702
Score = 28.9 bits (63), Expect = 2.3
Identities = 21/83 (25%), Positives = 33/83 (39%), Gaps = 5/83 (6%)
Query: 33 GFLVFLVTKNHSQTPGERASSLSGAGPAVLTEFAAPSSSRDRAGFPSASEGDSQAKAGGG 92
G L V + TP + + +T A S+S P S+GDSQ++
Sbjct: 52 GLLPLPVVPSRLPTPATAPAPCTTGSSEAITSLVASSASAVTTKAPGISKGDSQSQGLAT 111
Query: 93 GVRFPRWKEPEAN--TVWLSPQP 113
+ RW + N T W + +P
Sbjct: 112 SI---RWGQTPINQSTPWDTDEP 131
>gi|239745511 PREDICTED: hypothetical protein XP_002343508 [Homo
sapiens]
Length = 427
Score = 28.9 bits (63), Expect = 2.3
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 47 PGERASSLSGAG-PAVLTEFAAPSSSRDRAGFPSASEGDSQAKAGGGGVRFPR 98
PG AS++SG+ P +L A + + +AG+ S + A A GG + PR
Sbjct: 212 PGAAASAVSGSWLPIMLESEAGGTDAAGQAGWRSPGKSMGDAAAPGGSLGNPR 264
>gi|239741555 PREDICTED: kelch repeat and BTB (POZ) domain
containing 9 [Homo sapiens]
Length = 875
Score = 28.9 bits (63), Expect = 2.3
Identities = 21/83 (25%), Positives = 33/83 (39%), Gaps = 5/83 (6%)
Query: 33 GFLVFLVTKNHSQTPGERASSLSGAGPAVLTEFAAPSSSRDRAGFPSASEGDSQAKAGGG 92
G L V + TP + + +T A S+S P S+GDSQ++
Sbjct: 52 GLLPLPVVPSRLPTPATAPAPCTTGSSEAITSLVASSASAVTTKAPGISKGDSQSQGLAT 111
Query: 93 GVRFPRWKEPEAN--TVWLSPQP 113
+ RW + N T W + +P
Sbjct: 112 SI---RWGQTPINQSTPWDTDEP 131
>gi|38348304 von Willebrand factor A domain containing 2 [Homo
sapiens]
Length = 725
Score = 28.9 bits (63), Expect = 2.3
Identities = 29/99 (29%), Positives = 41/99 (41%), Gaps = 8/99 (8%)
Query: 6 LDLLTPLQNLKSTVDLEVSKELARQVTGFLVFLVTKNHSQTPGERASSLSGAGPAVLTEF 65
LD + Q +K+ + V K + L +L+ H PG R +S+ P +L
Sbjct: 105 LDSFSTQQEVKARIKRMVFKGGRTETELALKYLL---HRGLPGGRNASV----PQILIIV 157
Query: 66 AAPSSSRDRAGFPSASEGDSQAKAGGGGVRFPRWKEPEA 104
S D A PS + GVRFPRW+E A
Sbjct: 158 TDGKSQGDVA-LPSKQLKERGVTVFAVGVRFPRWEELHA 195
>gi|115583670 T-cell lymphoma invasion and metastasis 1 [Homo sapiens]
Length = 1591
Score = 28.5 bits (62), Expect = 3.1
Identities = 23/71 (32%), Positives = 30/71 (42%), Gaps = 17/71 (23%)
Query: 48 GERASSLSGAGPAVLTEFAAPSSSRDR---------------AGFPSASEGDSQAKAGGG 92
G+R +L GA PA+ +APS S R A S+ E +SQ GGG
Sbjct: 1419 GKRLCALKGARPAMSRAVSAPSKSLGRRRRRLARNRFTIDSDAVSASSPEKESQQPPGGG 1478
Query: 93 GVRFPRWKEPE 103
RW E +
Sbjct: 1479 DT--DRWVEEQ 1487
>gi|148886716 downstream of Stk11 [Homo sapiens]
Length = 447
Score = 28.5 bits (62), Expect = 3.1
Identities = 20/52 (38%), Positives = 26/52 (50%), Gaps = 7/52 (13%)
Query: 44 SQTPGERASSLSGAGPAVLTEFA--APSSSRDRAGFPSASEGDSQAKAGGGG 93
S PG+ +S +GA T+FA +PS+S D S G KAGG G
Sbjct: 218 SALPGDPYNSAAGA-----TDFAEISPSASSDSGEGTSLDAGTRSTKAGGPG 264
>gi|239755904 PREDICTED: hypothetical protein XP_002344738 [Homo
sapiens]
Length = 205
Score = 28.1 bits (61), Expect = 4.0
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 51 ASSLSGAGPAVLTEFAAPSSSRDRAGFPSASEGDSQAKAGGGG 93
+S++SG+ PAV+ + AP +S P ++ G SQ A G G
Sbjct: 151 SSAISGSRPAVMPQ-PAPRASTPPPRPPPSAPGPSQPPAAGSG 192
>gi|239753791 PREDICTED: hypothetical protein [Homo sapiens]
Length = 262
Score = 28.1 bits (61), Expect = 4.0
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 11/63 (17%)
Query: 44 SQTPGERASSLSGAGPAVLTEFAA-----------PSSSRDRAGFPSASEGDSQAKAGGG 92
S T ASS +GAG + A+ SSS G PSASEG S ++G
Sbjct: 177 SSTAEGAASSATGAGSGAGSGLASVGASVGLGGLWASSSFSNIGKPSASEGSSGDRSGRV 236
Query: 93 GVR 95
G++
Sbjct: 237 GLK 239
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.131 0.400
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,417,722
Number of Sequences: 37866
Number of extensions: 358021
Number of successful extensions: 993
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 959
Number of HSP's gapped (non-prelim): 57
length of query: 174
length of database: 18,247,518
effective HSP length: 95
effective length of query: 79
effective length of database: 14,650,248
effective search space: 1157369592
effective search space used: 1157369592
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.