Guide to the Human Genome
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Name: LOC100292891 Sequence: fasta or formatted (174aa) NCBI GI: 239753116
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.0         14           2
 C cysteine            1.7          3           1
 D aspartate           4.0          7           1
 E glutamate           6.9         12           2
 F phenylalanine       3.4          6           1
 G glycine             9.8         17           4
 H histidine           0.6          1           1
 I isoleucine          2.9          5           2
 K lysine              4.0          7           1
 L leucine            10.9         19           2
 M methionine          1.1          2           1
 N asparagine          2.9          5           1
 P proline             6.9         12           1
 Q glutamine           4.0          7           1
 R arginine            6.9         12           1
 S serine             10.3         18           3
 T threonine           6.9         12           1
 V valine              5.7         10           1
 W tryptophan          2.9          5           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100288316          1.000   PREDICTED: hypothetical protein 
LOC100288316          1.000   PREDICTED: hypothetical protein XP_002342234 
TP53I13               0.024   tumor protein p53 inducible protein 13 
LOC100290189          0.024   PREDICTED: hypothetical protein XP_002347700 
LOC100289086          0.024   PREDICTED: hypothetical protein XP_002344149 
ETV2                  0.021   ets variant gene 2 
TP53BP1               0.018   tumor protein p53 binding protein 1 isoform 2 [Homo...
MAGI1                 0.018   membrane associated guanylate kinase, WW and PDZ dom...
MAGI1                 0.018   membrane associated guanylate kinase, WW and PDZ dom...
MAGI1                 0.018   membrane associated guanylate kinase, WW and PDZ dom...
SYNM                  0.015   desmuslin isoform B 
SYNM                  0.015   desmuslin isoform A 
LMTK3                 0.015   lemur tyrosine kinase 3 
GGN                   0.015   gametogenetin 
LOC100293798          0.015   PREDICTED: hypothetical protein 
ARID1A                0.012   AT rich interactive domain 1A isoform a 
ARID1A                0.012   AT rich interactive domain 1A isoform b 
LOC100293295          0.012   PREDICTED: hypothetical protein 
LOC100291743          0.012   PREDICTED: hypothetical protein XP_002344931 
KLHL29                0.012   PREDICTED: kelch-like 29 (Drosophila) 
LOC100289969          0.012   PREDICTED: hypothetical protein XP_002347692 
KLHL29                0.012   PREDICTED: kelch-like 29 (Drosophila) 
LOC100288859          0.012   PREDICTED: hypothetical protein XP_002343508 
KLHL29                0.012   PREDICTED: kelch repeat and BTB (POZ) domain contai...
VWA2                  0.012   von Willebrand factor A domain containing 2 
TIAM1                 0.009   T-cell lymphoma invasion and metastasis 1 
C19orf26              0.009   downstream of Stk11 
LOC100292073          0.009   PREDICTED: hypothetical protein XP_002344738 
LOC100293322          0.009   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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