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Search of human proteins with 239747606
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239747606 PREDICTED: hypothetical protein XP_002347888 [Homo
sapiens]
(168 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239747606 PREDICTED: hypothetical protein XP_002347888 [Homo ... 335 1e-92
gi|239741478 PREDICTED: hypothetical protein XP_002342228 [Homo ... 333 4e-92
gi|239740993 PREDICTED: hypothetical protein XP_002342057 [Homo ... 333 5e-92
gi|239752651 PREDICTED: similar to hCG2042721 [Homo sapiens] 330 3e-91
gi|62243734 signal transducing adaptor family member 2 isoform 1... 42 3e-04
gi|217035093 cyclic nucleotide gated channel alpha 1 isoform 1 [... 40 7e-04
gi|169216486 PREDICTED: hCG_1742852 [Homo sapiens] 40 7e-04
gi|169216528 PREDICTED: hCG_1742852 [Homo sapiens] 40 7e-04
gi|239747074 PREDICTED: hypothetical protein XP_002343911 [Homo ... 40 0.001
gi|169216761 PREDICTED: hCG_1742852 [Homo sapiens] 40 0.001
gi|237858668 hypothetical protein LOC123207 isoform d [Homo sapi... 39 0.002
gi|54112407 protein kinase CHK2 isoform c [Homo sapiens] 39 0.003
gi|4506473 v-rel reticuloendotheliosis viral oncogene homolog [H... 36 0.018
gi|169213800 PREDICTED: hypothetical protein [Homo sapiens] 36 0.018
gi|169214229 PREDICTED: hypothetical protein [Homo sapiens] 36 0.018
gi|169213573 PREDICTED: hypothetical protein [Homo sapiens] 36 0.018
gi|61744475 solute carrier family 3, member 2 isoform a [Homo sa... 36 0.018
gi|195963398 suppressor of G2 allele of SKP1 isoform a [Homo sap... 35 0.023
gi|194473995 zinc finger protein 195 isoform 2 [Homo sapiens] 35 0.040
gi|194473688 zinc finger protein 195 isoform 1 [Homo sapiens] 35 0.040
gi|62198241 cutA divalent cation tolerance homolog isoform 1 [Ho... 33 0.088
gi|169213867 PREDICTED: hypothetical protein LOC100128682 [Homo ... 33 0.15
gi|169214305 PREDICTED: hypothetical protein LOC100128682 [Homo ... 33 0.15
gi|169213267 PREDICTED: hypothetical protein LOC100128682 [Homo ... 33 0.15
gi|66277202 podocalyxin-like isoform 1 precursor [Homo sapiens] 33 0.15
gi|28212280 hypothetical protein LOC283579 [Homo sapiens] 33 0.15
gi|33188429 tetratricopeptide repeat protein isoform 1 [Homo sap... 32 0.20
gi|148664240 hypothetical protein LOC146556 isoform 1 [Homo sapi... 32 0.33
gi|239751420 PREDICTED: similar to hCG2039376 [Homo sapiens] 31 0.44
gi|65506891 solute carrier family 3, member 2 isoform c [Homo sa... 31 0.57
>gi|239747606 PREDICTED: hypothetical protein XP_002347888 [Homo
sapiens]
Length = 168
Score = 335 bits (859), Expect = 1e-92
Identities = 168/168 (100%), Positives = 168/168 (100%)
Query: 1 MPKGWGVRSSTFLPLWLPVKIELHQVQFHSSSQMIFSTLRSELYKLLALCQHAVVPMGKF 60
MPKGWGVRSSTFLPLWLPVKIELHQVQFHSSSQMIFSTLRSELYKLLALCQHAVVPMGKF
Sbjct: 1 MPKGWGVRSSTFLPLWLPVKIELHQVQFHSSSQMIFSTLRSELYKLLALCQHAVVPMGKF 60
Query: 61 LGKTKTQSQGQVVIFSEKGKAIIYLSLPRTVPIYTCIFSQSVGCLFILLIISFNFLLFIY 120
LGKTKTQSQGQVVIFSEKGKAIIYLSLPRTVPIYTCIFSQSVGCLFILLIISFNFLLFIY
Sbjct: 61 LGKTKTQSQGQVVIFSEKGKAIIYLSLPRTVPIYTCIFSQSVGCLFILLIISFNFLLFIY 120
Query: 121 FIETDLIMLPRVILDLLASSDPPTLVSQSAGITDVNYHTQSTCRRFSV 168
FIETDLIMLPRVILDLLASSDPPTLVSQSAGITDVNYHTQSTCRRFSV
Sbjct: 121 FIETDLIMLPRVILDLLASSDPPTLVSQSAGITDVNYHTQSTCRRFSV 168
>gi|239741478 PREDICTED: hypothetical protein XP_002342228 [Homo
sapiens]
Length = 168
Score = 333 bits (854), Expect = 4e-92
Identities = 167/168 (99%), Positives = 167/168 (99%)
Query: 1 MPKGWGVRSSTFLPLWLPVKIELHQVQFHSSSQMIFSTLRSELYKLLALCQHAVVPMGKF 60
MPKGWGVRSSTFLPLWLPVKIELHQVQFHSSSQMIFSTLRSELYKLLALCQHAVVPMGKF
Sbjct: 1 MPKGWGVRSSTFLPLWLPVKIELHQVQFHSSSQMIFSTLRSELYKLLALCQHAVVPMGKF 60
Query: 61 LGKTKTQSQGQVVIFSEKGKAIIYLSLPRTVPIYTCIFSQSVGCLFILLIISFNFLLFIY 120
LGKTKTQ QGQVVIFSEKGKAIIYLSLPRTVPIYTCIFSQSVGCLFILLIISFNFLLFIY
Sbjct: 61 LGKTKTQPQGQVVIFSEKGKAIIYLSLPRTVPIYTCIFSQSVGCLFILLIISFNFLLFIY 120
Query: 121 FIETDLIMLPRVILDLLASSDPPTLVSQSAGITDVNYHTQSTCRRFSV 168
FIETDLIMLPRVILDLLASSDPPTLVSQSAGITDVNYHTQSTCRRFSV
Sbjct: 121 FIETDLIMLPRVILDLLASSDPPTLVSQSAGITDVNYHTQSTCRRFSV 168
>gi|239740993 PREDICTED: hypothetical protein XP_002342057 [Homo
sapiens]
Length = 168
Score = 333 bits (853), Expect = 5e-92
Identities = 167/168 (99%), Positives = 167/168 (99%)
Query: 1 MPKGWGVRSSTFLPLWLPVKIELHQVQFHSSSQMIFSTLRSELYKLLALCQHAVVPMGKF 60
MPKGWGVRSSTFLPLWLPVKIELHQVQFHSSSQMIFSTLRSELYKLLALCQHAVVPMGKF
Sbjct: 1 MPKGWGVRSSTFLPLWLPVKIELHQVQFHSSSQMIFSTLRSELYKLLALCQHAVVPMGKF 60
Query: 61 LGKTKTQSQGQVVIFSEKGKAIIYLSLPRTVPIYTCIFSQSVGCLFILLIISFNFLLFIY 120
LGKTKTQSQGQVVIFSEKGKAIIYLSLPRTVPIYTCIFSQSVGCLFILLIIS NFLLFIY
Sbjct: 61 LGKTKTQSQGQVVIFSEKGKAIIYLSLPRTVPIYTCIFSQSVGCLFILLIISLNFLLFIY 120
Query: 121 FIETDLIMLPRVILDLLASSDPPTLVSQSAGITDVNYHTQSTCRRFSV 168
FIETDLIMLPRVILDLLASSDPPTLVSQSAGITDVNYHTQSTCRRFSV
Sbjct: 121 FIETDLIMLPRVILDLLASSDPPTLVSQSAGITDVNYHTQSTCRRFSV 168
>gi|239752651 PREDICTED: similar to hCG2042721 [Homo sapiens]
Length = 168
Score = 330 bits (846), Expect = 3e-91
Identities = 166/168 (98%), Positives = 166/168 (98%)
Query: 1 MPKGWGVRSSTFLPLWLPVKIELHQVQFHSSSQMIFSTLRSELYKLLALCQHAVVPMGKF 60
MPKGWGVRSSTFLPLWLPVKIELHQVQFHSSSQMIFSTLRSELYKLLALCQHAVVPMGKF
Sbjct: 1 MPKGWGVRSSTFLPLWLPVKIELHQVQFHSSSQMIFSTLRSELYKLLALCQHAVVPMGKF 60
Query: 61 LGKTKTQSQGQVVIFSEKGKAIIYLSLPRTVPIYTCIFSQSVGCLFILLIISFNFLLFIY 120
LGKTKTQSQGQVVIFSEKGKAIIYLSLPRTVPIYTCIFSQSVGCLFILLIIS NFLLFIY
Sbjct: 61 LGKTKTQSQGQVVIFSEKGKAIIYLSLPRTVPIYTCIFSQSVGCLFILLIISLNFLLFIY 120
Query: 121 FIETDLIMLPRVILDLLASSDPPTLVSQSAGITDVNYHTQSTCRRFSV 168
FIETDLIMLPRVILDL ASSDPPTLVSQSAGITDVNYHTQSTCRRFSV
Sbjct: 121 FIETDLIMLPRVILDLPASSDPPTLVSQSAGITDVNYHTQSTCRRFSV 168
>gi|62243734 signal transducing adaptor family member 2 isoform 1
[Homo sapiens]
Length = 449
Score = 41.6 bits (96), Expect = 3e-04
Identities = 19/26 (73%), Positives = 22/26 (84%)
Query: 134 LDLLASSDPPTLVSQSAGITDVNYHT 159
L+LL SSDPPT SQSAGIT V++HT
Sbjct: 370 LELLTSSDPPTSASQSAGITGVSHHT 395
>gi|217035093 cyclic nucleotide gated channel alpha 1 isoform 1
[Homo sapiens]
Length = 759
Score = 40.4 bits (93), Expect = 7e-04
Identities = 26/67 (38%), Positives = 36/67 (53%)
Query: 89 RTVPIYTCIFSQSVGCLFILLIISFNFLLFIYFIETDLIMLPRVILDLLASSDPPTLVSQ 148
R+ P C + S C L S L+F++ +E + + L+LL SSD PT SQ
Sbjct: 4 RSSPRLECSGAISAHCSLHLPDSSDFQLIFVFLVEMGFHHVGQAGLELLISSDLPTSASQ 63
Query: 149 SAGITDV 155
SAGITD+
Sbjct: 64 SAGITDM 70
>gi|169216486 PREDICTED: hCG_1742852 [Homo sapiens]
Length = 402
Score = 40.4 bits (93), Expect = 7e-04
Identities = 19/40 (47%), Positives = 27/40 (67%)
Query: 118 FIYFIETDLIMLPRVILDLLASSDPPTLVSQSAGITDVNY 157
F+ +ET + + + L+LL S DPPT SQSAGIT V++
Sbjct: 350 FVVLVETVFLHVDQAGLELLISGDPPTSASQSAGITGVSH 389
>gi|169216528 PREDICTED: hCG_1742852 [Homo sapiens]
Length = 402
Score = 40.4 bits (93), Expect = 7e-04
Identities = 19/40 (47%), Positives = 27/40 (67%)
Query: 118 FIYFIETDLIMLPRVILDLLASSDPPTLVSQSAGITDVNY 157
F+ +ET + + + L+LL S DPPT SQSAGIT V++
Sbjct: 350 FVVLVETVFLHVDQAGLELLISGDPPTSASQSAGITGVSH 389
>gi|239747074 PREDICTED: hypothetical protein XP_002343911 [Homo
sapiens]
Length = 402
Score = 40.0 bits (92), Expect = 0.001
Identities = 19/40 (47%), Positives = 26/40 (65%)
Query: 118 FIYFIETDLIMLPRVILDLLASSDPPTLVSQSAGITDVNY 157
F+ +ET + + + L+LL S DPPT SQSAGIT V +
Sbjct: 350 FVVLVETVFLHVDQAGLELLISGDPPTSASQSAGITGVTH 389
>gi|169216761 PREDICTED: hCG_1742852 [Homo sapiens]
Length = 402
Score = 40.0 bits (92), Expect = 0.001
Identities = 19/40 (47%), Positives = 26/40 (65%)
Query: 118 FIYFIETDLIMLPRVILDLLASSDPPTLVSQSAGITDVNY 157
F+ +ET + + + L+LL S DPPT SQSAGIT V +
Sbjct: 350 FVVLVETVFLHVDQAGLELLISGDPPTSASQSAGITGVTH 389
>gi|237858668 hypothetical protein LOC123207 isoform d [Homo
sapiens]
Length = 167
Score = 39.3 bits (90), Expect = 0.002
Identities = 19/27 (70%), Positives = 22/27 (81%)
Query: 134 LDLLASSDPPTLVSQSAGITDVNYHTQ 160
L+LLASSD P SQSAGIT V++HTQ
Sbjct: 133 LELLASSDLPASASQSAGITGVSHHTQ 159
>gi|54112407 protein kinase CHK2 isoform c [Homo sapiens]
Length = 586
Score = 38.5 bits (88), Expect = 0.003
Identities = 19/42 (45%), Positives = 26/42 (61%)
Query: 122 IETDLIMLPRVILDLLASSDPPTLVSQSAGITDVNYHTQSTC 163
+ET+ + + L+LL SSDPP SQSAGI V +H + C
Sbjct: 106 LETESGHVTQSDLELLLSSDPPASASQSAGIRGVRHHPRPVC 147
>gi|4506473 v-rel reticuloendotheliosis viral oncogene homolog [Homo
sapiens]
Length = 619
Score = 35.8 bits (81), Expect = 0.018
Identities = 20/36 (55%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
Query: 122 IETDLIMLPRVILDLLASSDPPTLVSQSAGITDVNY 157
+ET + + L+LL S DPPTL SQSAGIT VN+
Sbjct: 308 VETGFRHVDQDGLELLTSGDPPTLASQSAGIT-VNF 342
>gi|169213800 PREDICTED: hypothetical protein [Homo sapiens]
Length = 142
Score = 35.8 bits (81), Expect = 0.018
Identities = 17/28 (60%), Positives = 21/28 (75%)
Query: 134 LDLLASSDPPTLVSQSAGITDVNYHTQS 161
L+LL SSDPPT SQ+A IT V++ QS
Sbjct: 11 LELLTSSDPPTSASQNAEITGVSHRAQS 38
>gi|169214229 PREDICTED: hypothetical protein [Homo sapiens]
Length = 142
Score = 35.8 bits (81), Expect = 0.018
Identities = 17/28 (60%), Positives = 21/28 (75%)
Query: 134 LDLLASSDPPTLVSQSAGITDVNYHTQS 161
L+LL SSDPPT SQ+A IT V++ QS
Sbjct: 11 LELLTSSDPPTSASQNAEITGVSHRAQS 38
>gi|169213573 PREDICTED: hypothetical protein [Homo sapiens]
Length = 142
Score = 35.8 bits (81), Expect = 0.018
Identities = 17/28 (60%), Positives = 21/28 (75%)
Query: 134 LDLLASSDPPTLVSQSAGITDVNYHTQS 161
L+LL SSDPPT SQ+A IT V++ QS
Sbjct: 11 LELLTSSDPPTSASQNAEITGVSHRAQS 38
>gi|61744475 solute carrier family 3, member 2 isoform a [Homo
sapiens]
Length = 661
Score = 35.8 bits (81), Expect = 0.018
Identities = 17/37 (45%), Positives = 24/37 (64%)
Query: 122 IETDLIMLPRVILDLLASSDPPTLVSQSAGITDVNYH 158
IET + + L LLASSDPP L S++A +T+ +H
Sbjct: 68 IETGSDCVTQAGLQLLASSDPPALASKNAEVTETGFH 104
>gi|195963398 suppressor of G2 allele of SKP1 isoform a [Homo
sapiens]
Length = 365
Score = 35.4 bits (80), Expect = 0.023
Identities = 21/38 (55%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
Query: 122 IETDLIMLPRVILDLLASSDPPTLVSQSAGIT--DVNY 157
IET + + L LL SSDPP L SQSAGIT D N+
Sbjct: 110 IETGFHRVGQAGLQLLTSSDPPALDSQSAGITGADANF 147
>gi|194473995 zinc finger protein 195 isoform 2 [Homo sapiens]
Length = 606
Score = 34.7 bits (78), Expect = 0.040
Identities = 17/27 (62%), Positives = 19/27 (70%)
Query: 134 LDLLASSDPPTLVSQSAGITDVNYHTQ 160
L+LL SSD P SQSAGIT VN+ Q
Sbjct: 87 LELLGSSDLPASASQSAGITGVNHRAQ 113
>gi|194473688 zinc finger protein 195 isoform 1 [Homo sapiens]
Length = 629
Score = 34.7 bits (78), Expect = 0.040
Identities = 17/27 (62%), Positives = 19/27 (70%)
Query: 134 LDLLASSDPPTLVSQSAGITDVNYHTQ 160
L+LL SSD P SQSAGIT VN+ Q
Sbjct: 87 LELLGSSDLPASASQSAGITGVNHRAQ 113
>gi|62198241 cutA divalent cation tolerance homolog isoform 1 [Homo
sapiens]
Length = 198
Score = 33.5 bits (75), Expect = 0.088
Identities = 19/63 (30%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 88 PRTVPIYTCIFSQSVGCLFILLIISFNFLLFIYFIETDLIMLPRVILDLLASSDPPTLVS 147
P + + +FS V L++SF ++ + + + L++LPRV+L +AS PPT S
Sbjct: 15 PSSTVTWCALFSNHVAATQASLLLSFVWMPALLPVASRLLLLPRVLL-TMASGSPPTQPS 73
Query: 148 QSA 150
++
Sbjct: 74 PAS 76
>gi|169213867 PREDICTED: hypothetical protein LOC100128682 [Homo
sapiens]
Length = 299
Score = 32.7 bits (73), Expect = 0.15
Identities = 15/25 (60%), Positives = 18/25 (72%)
Query: 136 LLASSDPPTLVSQSAGITDVNYHTQ 160
LL +SD PTL SQS IT V++H Q
Sbjct: 192 LLTASDLPTLASQSVAITGVSHHAQ 216
>gi|169214305 PREDICTED: hypothetical protein LOC100128682 [Homo
sapiens]
Length = 299
Score = 32.7 bits (73), Expect = 0.15
Identities = 15/25 (60%), Positives = 18/25 (72%)
Query: 136 LLASSDPPTLVSQSAGITDVNYHTQ 160
LL +SD PTL SQS IT V++H Q
Sbjct: 192 LLTASDLPTLASQSVAITGVSHHAQ 216
>gi|169213267 PREDICTED: hypothetical protein LOC100128682 [Homo
sapiens]
Length = 299
Score = 32.7 bits (73), Expect = 0.15
Identities = 15/25 (60%), Positives = 18/25 (72%)
Query: 136 LLASSDPPTLVSQSAGITDVNYHTQ 160
LL +SD PTL SQS IT V++H Q
Sbjct: 192 LLTASDLPTLASQSVAITGVSHHAQ 216
>gi|66277202 podocalyxin-like isoform 1 precursor [Homo sapiens]
Length = 558
Score = 32.7 bits (73), Expect = 0.15
Identities = 19/41 (46%), Positives = 25/41 (60%)
Query: 122 IETDLIMLPRVILDLLASSDPPTLVSQSAGITDVNYHTQST 162
+ET + + L+LL S D PTL SQSAGIT + +Q T
Sbjct: 236 LETVFHHVSQAGLELLTSGDLPTLASQSAGITASSVISQRT 276
>gi|28212280 hypothetical protein LOC283579 [Homo sapiens]
Length = 122
Score = 32.7 bits (73), Expect = 0.15
Identities = 15/24 (62%), Positives = 19/24 (79%)
Query: 134 LDLLASSDPPTLVSQSAGITDVNY 157
L+LL SS+PP SQSAGIT V++
Sbjct: 41 LELLGSSNPPASASQSAGITGVSH 64
>gi|33188429 tetratricopeptide repeat protein isoform 1 [Homo sapiens]
Length = 1079
Score = 32.3 bits (72), Expect = 0.20
Identities = 17/43 (39%), Positives = 24/43 (55%)
Query: 118 FIYFIETDLIMLPRVILDLLASSDPPTLVSQSAGITDVNYHTQ 160
F F+ET + + L+LL S SQSAGIT V++H +
Sbjct: 1037 FCIFVETGFHHVGQACLELLTSGGLLASASQSAGITGVSHHAR 1079
>gi|148664240 hypothetical protein LOC146556 isoform 1 [Homo
sapiens]
Length = 440
Score = 31.6 bits (70), Expect = 0.33
Identities = 15/35 (42%), Positives = 21/35 (60%)
Query: 118 FIYFIETDLIMLPRVILDLLASSDPPTLVSQSAGI 152
+I+ +ET + L+LL S DPPT SQS G+
Sbjct: 406 YIFLVETGFHHVAHAGLELLISRDPPTSGSQSVGL 440
>gi|239751420 PREDICTED: similar to hCG2039376 [Homo sapiens]
Length = 858
Score = 31.2 bits (69), Expect = 0.44
Identities = 15/26 (57%), Positives = 19/26 (73%)
Query: 134 LDLLASSDPPTLVSQSAGITDVNYHT 159
L+LL SS P L SQSAGIT +++ T
Sbjct: 706 LELLVSSSPSALASQSAGITGMSHCT 731
>gi|65506891 solute carrier family 3, member 2 isoform c [Homo
sapiens]
Length = 630
Score = 30.8 bits (68), Expect = 0.57
Identities = 16/32 (50%), Positives = 21/32 (65%)
Query: 122 IETDLIMLPRVILDLLASSDPPTLVSQSAGIT 153
IET + + L LLASSDPP L S++A +T
Sbjct: 68 IETGSDCVTQAGLQLLASSDPPALASKNAEVT 99
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.328 0.140 0.423
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,626,345
Number of Sequences: 37866
Number of extensions: 198166
Number of successful extensions: 717
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 666
Number of HSP's gapped (non-prelim): 56
length of query: 168
length of database: 18,247,518
effective HSP length: 95
effective length of query: 73
effective length of database: 14,650,248
effective search space: 1069468104
effective search space used: 1069468104
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
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Search text |
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.