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Search of human proteins with 239747548
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239747548 PREDICTED: achaete-scute complex homolog 5
(Drosophila) [Homo sapiens]
(313 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239752994 PREDICTED: achaete-scute complex homolog 5 (Drosoph... 664 0.0
gi|239747548 PREDICTED: achaete-scute complex homolog 5 (Drosoph... 664 0.0
gi|239741422 PREDICTED: achaete-scute complex homolog 5 [Homo sa... 664 0.0
gi|206597481 achaete-scute complex-like 4 [Homo sapiens] 109 4e-24
gi|10190680 ASCL3 [Homo sapiens] 106 3e-23
gi|4885665 achaete-scute complex homolog-like 2 [Homo sapiens] 88 1e-17
gi|55743094 achaete-scute complex homolog 1 [Homo sapiens] 75 7e-14
gi|239756681 PREDICTED: basic helix-loop-helix family, member a9... 60 3e-09
gi|30039710 pancreas specific transcription factor, 1a [Homo sap... 59 4e-09
gi|239751178 PREDICTED: basic helix-loop-helix family, member a9... 59 6e-09
gi|239745666 PREDICTED: basic helix-loop-helix family, member a9... 59 6e-09
gi|34147558 lymphoblastic leukemia derived sequence 1 [Homo sapi... 58 1e-08
gi|148922889 scleraxis homolog B [Homo sapiens] 55 8e-08
gi|186972126 scleraxis homolog A [Homo sapiens] 55 8e-08
gi|12545384 basic helix-loop-helix transcription factor HAND2 [H... 54 2e-07
gi|23097242 nephew of atonal 3 [Homo sapiens] 53 3e-07
gi|29126247 basic helix-loop-helix family, member a15 [Homo sapi... 53 4e-07
gi|38455396 neurogenin 1 [Homo sapiens] 51 1e-06
gi|4758506 basic helix-loop-helix transcription factor HAND1 [Ho... 51 1e-06
gi|23111009 myogenic differentiation 1 [Homo sapiens] 50 2e-06
gi|17981708 twist homolog 2 [Homo sapiens] 50 3e-06
gi|4885619 T-cell acute lymphocytic leukemia 2 [Homo sapiens] 50 3e-06
gi|4885075 atonal homolog 1 [Homo sapiens] 49 4e-06
gi|4507363 T-cell acute lymphocytic leukemia 1 [Homo sapiens] 49 4e-06
gi|4507741 twist [Homo sapiens] 49 6e-06
gi|116517330 factor in the germline alpha [Homo sapiens] 49 6e-06
gi|116256356 alpha 4 type IV collagen precursor [Homo sapiens] 48 1e-05
gi|119508426 alpha 3 type IX collagen [Homo sapiens] 48 1e-05
gi|48255909 basic helix-loop-helix transcription factor 15 [Homo... 48 1e-05
gi|6382071 diaphanous 2 isoform 12C [Homo sapiens] 47 2e-05
>gi|239752994 PREDICTED: achaete-scute complex homolog 5
(Drosophila) [Homo sapiens]
Length = 313
Score = 664 bits (1714), Expect = 0.0
Identities = 313/313 (100%), Positives = 313/313 (100%)
Query: 1 MSAPLAFSLRTNWQESWKKARPEAAEGAAGQAGSPGDSAVPPGGSRATDQDKRCRRNKPR 60
MSAPLAFSLRTNWQESWKKARPEAAEGAAGQAGSPGDSAVPPGGSRATDQDKRCRRNKPR
Sbjct: 1 MSAPLAFSLRTNWQESWKKARPEAAEGAAGQAGSPGDSAVPPGGSRATDQDKRCRRNKPR 60
Query: 61 EKCSRGLPPLSWRTPNSSHQFGDPGQPGDPEGREDQGPGAGVAPRGTMNNNFCRALVDRR 120
EKCSRGLPPLSWRTPNSSHQFGDPGQPGDPEGREDQGPGAGVAPRGTMNNNFCRALVDRR
Sbjct: 61 EKCSRGLPPLSWRTPNSSHQFGDPGQPGDPEGREDQGPGAGVAPRGTMNNNFCRALVDRR 120
Query: 121 PLGPPSCMQLGVMPPPRQAPLPPAEPLGNVPFLLYPGPAEPPYYDAYAGVFPYVPFPGAF 180
PLGPPSCMQLGVMPPPRQAPLPPAEPLGNVPFLLYPGPAEPPYYDAYAGVFPYVPFPGAF
Sbjct: 121 PLGPPSCMQLGVMPPPRQAPLPPAEPLGNVPFLLYPGPAEPPYYDAYAGVFPYVPFPGAF 180
Query: 181 GVYEYPFEPAFIQKRNERERQRVKCVNEGYARLRGHLPGALAEKRLSKVETLRAAIRYIK 240
GVYEYPFEPAFIQKRNERERQRVKCVNEGYARLRGHLPGALAEKRLSKVETLRAAIRYIK
Sbjct: 181 GVYEYPFEPAFIQKRNERERQRVKCVNEGYARLRGHLPGALAEKRLSKVETLRAAIRYIK 240
Query: 241 YLQELLSSAPDGSTPPASRGLPGTGPCPAPPATPRPDRPGDGEARAPSSLVPESSESSCF 300
YLQELLSSAPDGSTPPASRGLPGTGPCPAPPATPRPDRPGDGEARAPSSLVPESSESSCF
Sbjct: 241 YLQELLSSAPDGSTPPASRGLPGTGPCPAPPATPRPDRPGDGEARAPSSLVPESSESSCF 300
Query: 301 SPSPFLESEESWH 313
SPSPFLESEESWH
Sbjct: 301 SPSPFLESEESWH 313
>gi|239747548 PREDICTED: achaete-scute complex homolog 5
(Drosophila) [Homo sapiens]
Length = 313
Score = 664 bits (1714), Expect = 0.0
Identities = 313/313 (100%), Positives = 313/313 (100%)
Query: 1 MSAPLAFSLRTNWQESWKKARPEAAEGAAGQAGSPGDSAVPPGGSRATDQDKRCRRNKPR 60
MSAPLAFSLRTNWQESWKKARPEAAEGAAGQAGSPGDSAVPPGGSRATDQDKRCRRNKPR
Sbjct: 1 MSAPLAFSLRTNWQESWKKARPEAAEGAAGQAGSPGDSAVPPGGSRATDQDKRCRRNKPR 60
Query: 61 EKCSRGLPPLSWRTPNSSHQFGDPGQPGDPEGREDQGPGAGVAPRGTMNNNFCRALVDRR 120
EKCSRGLPPLSWRTPNSSHQFGDPGQPGDPEGREDQGPGAGVAPRGTMNNNFCRALVDRR
Sbjct: 61 EKCSRGLPPLSWRTPNSSHQFGDPGQPGDPEGREDQGPGAGVAPRGTMNNNFCRALVDRR 120
Query: 121 PLGPPSCMQLGVMPPPRQAPLPPAEPLGNVPFLLYPGPAEPPYYDAYAGVFPYVPFPGAF 180
PLGPPSCMQLGVMPPPRQAPLPPAEPLGNVPFLLYPGPAEPPYYDAYAGVFPYVPFPGAF
Sbjct: 121 PLGPPSCMQLGVMPPPRQAPLPPAEPLGNVPFLLYPGPAEPPYYDAYAGVFPYVPFPGAF 180
Query: 181 GVYEYPFEPAFIQKRNERERQRVKCVNEGYARLRGHLPGALAEKRLSKVETLRAAIRYIK 240
GVYEYPFEPAFIQKRNERERQRVKCVNEGYARLRGHLPGALAEKRLSKVETLRAAIRYIK
Sbjct: 181 GVYEYPFEPAFIQKRNERERQRVKCVNEGYARLRGHLPGALAEKRLSKVETLRAAIRYIK 240
Query: 241 YLQELLSSAPDGSTPPASRGLPGTGPCPAPPATPRPDRPGDGEARAPSSLVPESSESSCF 300
YLQELLSSAPDGSTPPASRGLPGTGPCPAPPATPRPDRPGDGEARAPSSLVPESSESSCF
Sbjct: 241 YLQELLSSAPDGSTPPASRGLPGTGPCPAPPATPRPDRPGDGEARAPSSLVPESSESSCF 300
Query: 301 SPSPFLESEESWH 313
SPSPFLESEESWH
Sbjct: 301 SPSPFLESEESWH 313
>gi|239741422 PREDICTED: achaete-scute complex homolog 5 [Homo
sapiens]
Length = 313
Score = 664 bits (1714), Expect = 0.0
Identities = 313/313 (100%), Positives = 313/313 (100%)
Query: 1 MSAPLAFSLRTNWQESWKKARPEAAEGAAGQAGSPGDSAVPPGGSRATDQDKRCRRNKPR 60
MSAPLAFSLRTNWQESWKKARPEAAEGAAGQAGSPGDSAVPPGGSRATDQDKRCRRNKPR
Sbjct: 1 MSAPLAFSLRTNWQESWKKARPEAAEGAAGQAGSPGDSAVPPGGSRATDQDKRCRRNKPR 60
Query: 61 EKCSRGLPPLSWRTPNSSHQFGDPGQPGDPEGREDQGPGAGVAPRGTMNNNFCRALVDRR 120
EKCSRGLPPLSWRTPNSSHQFGDPGQPGDPEGREDQGPGAGVAPRGTMNNNFCRALVDRR
Sbjct: 61 EKCSRGLPPLSWRTPNSSHQFGDPGQPGDPEGREDQGPGAGVAPRGTMNNNFCRALVDRR 120
Query: 121 PLGPPSCMQLGVMPPPRQAPLPPAEPLGNVPFLLYPGPAEPPYYDAYAGVFPYVPFPGAF 180
PLGPPSCMQLGVMPPPRQAPLPPAEPLGNVPFLLYPGPAEPPYYDAYAGVFPYVPFPGAF
Sbjct: 121 PLGPPSCMQLGVMPPPRQAPLPPAEPLGNVPFLLYPGPAEPPYYDAYAGVFPYVPFPGAF 180
Query: 181 GVYEYPFEPAFIQKRNERERQRVKCVNEGYARLRGHLPGALAEKRLSKVETLRAAIRYIK 240
GVYEYPFEPAFIQKRNERERQRVKCVNEGYARLRGHLPGALAEKRLSKVETLRAAIRYIK
Sbjct: 181 GVYEYPFEPAFIQKRNERERQRVKCVNEGYARLRGHLPGALAEKRLSKVETLRAAIRYIK 240
Query: 241 YLQELLSSAPDGSTPPASRGLPGTGPCPAPPATPRPDRPGDGEARAPSSLVPESSESSCF 300
YLQELLSSAPDGSTPPASRGLPGTGPCPAPPATPRPDRPGDGEARAPSSLVPESSESSCF
Sbjct: 241 YLQELLSSAPDGSTPPASRGLPGTGPCPAPPATPRPDRPGDGEARAPSSLVPESSESSCF 300
Query: 301 SPSPFLESEESWH 313
SPSPFLESEESWH
Sbjct: 301 SPSPFLESEESWH 313
>gi|206597481 achaete-scute complex-like 4 [Homo sapiens]
Length = 173
Score = 109 bits (272), Expect = 4e-24
Identities = 66/122 (54%), Positives = 77/122 (63%), Gaps = 16/122 (13%)
Query: 173 YVPFPGAFGVYEYPFEPAFIQKRNERERQRVKCVNEGYARLRGHLPGALAEKRLSKVETL 232
Y+P P + FEPAF++KRNERERQRV+CVNEGYARLR HLP LA+KRLSKVETL
Sbjct: 61 YLPVP-----LDSAFEPAFLRKRNERERQRVRCVNEGYARLRDHLPRELADKRLSKVETL 115
Query: 233 RAAIRYIKYLQELLSSAPDGSTPPASRGLPGTGPCPAPPATPRPDRPGDGEARAPSSLVP 292
RAAI YIK+LQELL G G G P R + DGE++A S+ P
Sbjct: 116 RAAIDYIKHLQELLERQAWG-----LEGAAGAVP------QRRAECNSDGESKASSAPSP 164
Query: 293 ES 294
S
Sbjct: 165 SS 166
>gi|10190680 ASCL3 [Homo sapiens]
Length = 181
Score = 106 bits (264), Expect = 3e-23
Identities = 72/160 (45%), Positives = 85/160 (53%), Gaps = 33/160 (20%)
Query: 108 MNNNFCRALVDRRPLGPPSCMQLGVMPPPRQAPLPPAEPLGNVPFLLYPGPAEPPYYDAY 167
M+N +L D+ P+ P S +P R L P V F ++P E P Y
Sbjct: 2 MDNRGNSSLPDKLPIFPDSAR----LPLTRSFYLEPM-----VTFHVHP---EAPVSSPY 49
Query: 168 AGVFPYVPFPG---AFGVY------------------EYPFEPAFIQKRNERERQRVKCV 206
+ P +PFP G Y EY + PAF +KRNERERQRVKCV
Sbjct: 50 SEELPRLPFPSDSLILGNYSEPCPFSFPMPYPNYRGCEYSYGPAFTRKRNERERQRVKCV 109
Query: 207 NEGYARLRGHLPGALAEKRLSKVETLRAAIRYIKYLQELL 246
NEGYA+LR HLP EKRLSKVETLRAAI+YI YLQ LL
Sbjct: 110 NEGYAQLRHHLPEEYLEKRLSKVETLRAAIKYINYLQSLL 149
>gi|4885665 achaete-scute complex homolog-like 2 [Homo sapiens]
Length = 193
Score = 87.8 bits (216), Expect = 1e-17
Identities = 55/124 (44%), Positives = 67/124 (54%), Gaps = 15/124 (12%)
Query: 190 AFIQKRNERERQRVKCVNEGYARLRGHLPGALAEKRLSKVETLRAAIRYIKYLQELLSS- 248
A + +RNERER RVK VN G+ LR H+P A K+LSKVETLR+A+ YI+ LQ LL+
Sbjct: 50 AAVARRNERERNRVKLVNLGFQALRQHVPHGGASKKLSKVETLRSAVEYIRALQRLLAEH 109
Query: 249 -----------APDGSTPPASRGLPGTGPCPAPP--ATPRPDRPGDGEARAPSSLVPESS 295
P P A RG PGT P A P A+ P R G E +P S S
Sbjct: 110 DAVRNALAGGLRPQAVRPSAPRGPPGTTPVAASPSRASSSPGRGGSSEPGSPRSAY-SSD 168
Query: 296 ESSC 299
+S C
Sbjct: 169 DSGC 172
>gi|55743094 achaete-scute complex homolog 1 [Homo sapiens]
Length = 236
Score = 75.1 bits (183), Expect = 7e-14
Identities = 35/59 (59%), Positives = 46/59 (77%)
Query: 188 EPAFIQKRNERERQRVKCVNEGYARLRGHLPGALAEKRLSKVETLRAAIRYIKYLQELL 246
+PA + +RNERER RVK VN G+A LR H+P A K++SKVETLR+A+ YI+ LQ+LL
Sbjct: 116 QPAAVARRNERERNRVKLVNLGFATLREHVPNGAANKKMSKVETLRSAVEYIRALQQLL 174
>gi|239756681 PREDICTED: basic helix-loop-helix family, member a9
[Homo sapiens]
Length = 203
Score = 59.7 bits (143), Expect = 3e-09
Identities = 45/119 (37%), Positives = 56/119 (47%), Gaps = 11/119 (9%)
Query: 196 NERERQRVKCVNEGYARLRGHLPGALAEKRLSKVETLRAAIRYIKYLQELLSSAPDGSTP 255
N RER+R+ NE + LR L L KRLSK+ TLR AI I L +L ++P P
Sbjct: 71 NVRERKRILDYNEAFNALRRALRHDLGGKRLSKIATLRRAIHRIAALSLVLRASPAPRGP 130
Query: 256 --------PASRGLPG-TGPCPAPPATPRPDRPGDGEARAPSSLVPESSESSCFSPSPF 305
PA+RG G TG P PPA P RP PS+ P + P P+
Sbjct: 131 CGHLECHGPAARGDTGDTGASPPPPAGPSLARPDAARPSVPSA--PRCASCPPHGPPPW 187
>gi|30039710 pancreas specific transcription factor, 1a [Homo
sapiens]
Length = 328
Score = 59.3 bits (142), Expect = 4e-09
Identities = 38/90 (42%), Positives = 49/90 (54%), Gaps = 9/90 (10%)
Query: 193 QKRNERERQRVKCVNEGYARLRGHLPGALAEKRLSKVETLRAAIRYIKYLQELLSSAPDG 252
Q N RER+R++ +N+ + LR H+P EKRLSKV+TLR AI YI +L EL+
Sbjct: 166 QAANVRERRRMQSINDAFEGLRSHIPTLPYEKRLSKVDTLRLAIGYINFLSELVQ----- 220
Query: 253 STPPASRGLPGTGPCPAPPATPR--PDRPG 280
+ P G G G C P R D PG
Sbjct: 221 ADLPLRGG--GAGGCGGPGGGGRLGGDSPG 248
>gi|239751178 PREDICTED: basic helix-loop-helix family, member a9
[Homo sapiens]
Length = 235
Score = 58.9 bits (141), Expect = 6e-09
Identities = 42/103 (40%), Positives = 51/103 (49%), Gaps = 9/103 (8%)
Query: 196 NERERQRVKCVNEGYARLRGHLPGALAEKRLSKVETLRAAIRYIKYLQELLSSAPDGSTP 255
N RER+R+ NE + LR L L KRLSK+ TLR AI I L +L ++P P
Sbjct: 71 NVRERKRILDYNEAFNALRRALRHDLGGKRLSKIATLRRAIHRIAALSLVLRASPAPRGP 130
Query: 256 --------PASRGLPG-TGPCPAPPATPRPDRPGDGEARAPSS 289
PA+RG G TG P PPA P RP PS+
Sbjct: 131 CGHLECHGPAARGDTGDTGASPPPPAGPSLARPDAARPSVPSA 173
>gi|239745666 PREDICTED: basic helix-loop-helix family, member a9
[Homo sapiens]
Length = 235
Score = 58.9 bits (141), Expect = 6e-09
Identities = 42/103 (40%), Positives = 51/103 (49%), Gaps = 9/103 (8%)
Query: 196 NERERQRVKCVNEGYARLRGHLPGALAEKRLSKVETLRAAIRYIKYLQELLSSAPDGSTP 255
N RER+R+ NE + LR L L KRLSK+ TLR AI I L +L ++P P
Sbjct: 71 NVRERKRILDYNEAFNALRRALRHDLGGKRLSKIATLRRAIHRIAALSLVLRASPAPRGP 130
Query: 256 --------PASRGLPG-TGPCPAPPATPRPDRPGDGEARAPSS 289
PA+RG G TG P PPA P RP PS+
Sbjct: 131 CGHLECHGPAARGDTGDTGASPPPPAGPSLARPDAARPSVPSA 173
>gi|34147558 lymphoblastic leukemia derived sequence 1 [Homo
sapiens]
Length = 280
Score = 57.8 bits (138), Expect = 1e-08
Identities = 70/251 (27%), Positives = 95/251 (37%), Gaps = 39/251 (15%)
Query: 84 PGQPGDPEGREDQGPGAGVAPRGTMNNNFCRALVDRRPLGPPSCMQLGVMPPPRQAPLPP 143
P PG P+ E G PR R P +LG + PP L
Sbjct: 34 PASPGPPQVEEVGHRGGSSPPRLPPGVPVISLGHSRPPGVAMPTTELGTLRPP----LLQ 89
Query: 144 AEPLGNVPFLL----YPGPAEPPYYDAYAGVFPYVPFPGAFGVYEYP----------FEP 189
LG P L +P P Y AG P+ FP + + P +P
Sbjct: 90 LSTLGTAPPTLALHYHPHPFLNSVYIGPAG--PFSIFPSS-RLKRRPSHCELDLAEGHQP 146
Query: 190 AFIQKR---NERERQRVKCVNEGYARLRGHLPGALAEKRLSKVETLRAAIRYIKYLQELL 246
+ +R N RER R + VN +A LR LP +++LSK E LR A++YI +L LL
Sbjct: 147 QKVARRVFTNSRERWRQQNVNGAFAELRKLLPTHPPDRKLSKNEVLRLAMKYIGFLVRLL 206
Query: 247 ----SSAPDGSTPPASRGLP-----------GTGPCPAPPATPRPDRPGDGEARAPSSLV 291
++ G TPP R P G+G A +P P D + +
Sbjct: 207 RDQAAALAAGPTPPGPRKRPVHRVPDDGARRGSGRRAEAAARSQPAPPADPDGSPGGAAR 266
Query: 292 PESSESSCFSP 302
P E + SP
Sbjct: 267 PIKMEQTALSP 277
>gi|148922889 scleraxis homolog B [Homo sapiens]
Length = 201
Score = 55.1 bits (131), Expect = 8e-08
Identities = 35/106 (33%), Positives = 47/106 (44%), Gaps = 3/106 (2%)
Query: 188 EPAFIQKRNERERQRVKCVNEGYARLRGHLPGALAEKRLSKVETLRAAIRYIKYLQELL- 246
EP N RER R VN + LR +P A+++LSK+ETLR A YI +L +L
Sbjct: 73 EPRQRHTANARERDRTNSVNTAFTALRTLIPTEPADRKLSKIETLRLASSYISHLGNVLL 132
Query: 247 --SSAPDGSTPPASRGLPGTGPCPAPPATPRPDRPGDGEARAPSSL 290
+ DG + +PP P P DGE P +
Sbjct: 133 AGEACGDGQPCHSGPAFFHAARAGSPPPPPPPPPARDGENTQPKQI 178
>gi|186972126 scleraxis homolog A [Homo sapiens]
Length = 201
Score = 55.1 bits (131), Expect = 8e-08
Identities = 35/106 (33%), Positives = 47/106 (44%), Gaps = 3/106 (2%)
Query: 188 EPAFIQKRNERERQRVKCVNEGYARLRGHLPGALAEKRLSKVETLRAAIRYIKYLQELL- 246
EP N RER R VN + LR +P A+++LSK+ETLR A YI +L +L
Sbjct: 73 EPRQRHTANARERDRTNSVNTAFTALRTLIPTEPADRKLSKIETLRLASSYISHLGNVLL 132
Query: 247 --SSAPDGSTPPASRGLPGTGPCPAPPATPRPDRPGDGEARAPSSL 290
+ DG + +PP P P DGE P +
Sbjct: 133 AGEACGDGQPCHSGPAFFHAARAGSPPPPPPPPPARDGENTQPKQI 178
>gi|12545384 basic helix-loop-helix transcription factor HAND2 [Homo
sapiens]
Length = 217
Score = 53.9 bits (128), Expect = 2e-07
Identities = 32/84 (38%), Positives = 47/84 (55%), Gaps = 10/84 (11%)
Query: 167 YAGVFPYVPFPGAFGVYEYPFEPAFIQKR---NERERQRVKCVNEGYARLRGHLPGALAE 223
Y GV P PG G P +++R N +ER+R + +N +A LR +P A+
Sbjct: 80 YGGVPPGAGPPGLGG-------PRPVKRRGTANRKERRRTQSINSAFAELRECIPNVPAD 132
Query: 224 KRLSKVETLRAAIRYIKYLQELLS 247
+LSK++TLR A YI YL +LL+
Sbjct: 133 TKLSKIKTLRLATSYIAYLMDLLA 156
>gi|23097242 nephew of atonal 3 [Homo sapiens]
Length = 166
Score = 53.1 bits (126), Expect = 3e-07
Identities = 28/56 (50%), Positives = 38/56 (67%)
Query: 193 QKRNERERQRVKCVNEGYARLRGHLPGALAEKRLSKVETLRAAIRYIKYLQELLSS 248
Q N RER+R+ +NE + +LR +P EKRLS++ETLR AI YI ++ ELL S
Sbjct: 104 QAANIRERKRMFNLNEAFDQLRRKVPTFAYEKRLSRIETLRLAIVYISFMTELLES 159
>gi|29126247 basic helix-loop-helix family, member a15 [Homo
sapiens]
Length = 189
Score = 52.8 bits (125), Expect = 4e-07
Identities = 33/78 (42%), Positives = 43/78 (55%), Gaps = 7/78 (8%)
Query: 192 IQKR---NERERQRVKCVNEGYARLRGHLPGALAEKRLSKVETLRAAIRYIKYLQELLSS 248
IQ+R NERERQR+ +N + LR +P A+K+LSK+ETL A YIK L + +
Sbjct: 74 IQRRLESNERERQRMHKLNNAFQALREVIPHVRADKKLSKIETLTLAKNYIKSLTATILT 133
Query: 249 APDGSTPPASRGLPGTGP 266
P GL G GP
Sbjct: 134 MSSSRLP----GLEGPGP 147
>gi|38455396 neurogenin 1 [Homo sapiens]
Length = 237
Score = 51.2 bits (121), Expect = 1e-06
Identities = 43/119 (36%), Positives = 54/119 (45%), Gaps = 12/119 (10%)
Query: 194 KRNERERQRVKCVNEGYARLRGHLPGALAEKRLSKVETLRAAIRYIKYLQELLSSAPDGS 253
K N+RER R+ +N LR LP + +L+K+ETLR A YI L E L A G
Sbjct: 96 KANDRERNRMHNLNAALDALRSVLPSFPDDTKLTKIETLRFAYNYIWALAETLRLADQGL 155
Query: 254 TPPASRGL---PGTGPCPAPPATPRPDRP--GDGEARA-----PSSLVPESSESSCFSP 302
+R P PC P +P D G G A A PSS P +SE + P
Sbjct: 156 PGGGARERLLPPQCVPCLPGPPSPASDAESWGSGAAAASPLSDPSS--PAASEDFTYRP 212
>gi|4758506 basic helix-loop-helix transcription factor HAND1 [Homo
sapiens]
Length = 215
Score = 51.2 bits (121), Expect = 1e-06
Identities = 42/144 (29%), Positives = 63/144 (43%), Gaps = 29/144 (20%)
Query: 143 PAEPLGNVPFLLYPGPA---EPPYYDAY----AGVFPYVPFPG----------AFGVYEY 185
PA P+ + PFL P E PY+ ++ A P P G A+G
Sbjct: 18 PAHPMLHEPFLFGPASRCHQERPYFQSWLLSPADAAPDFPAGGPPPAAAAAATAYGPDAR 77
Query: 186 PFE-PAFIQKRNER-----------ERQRVKCVNEGYARLRGHLPGALAEKRLSKVETLR 233
P + P ++ R ER+R + +N +A LR +P A+ +LSK++TLR
Sbjct: 78 PGQSPGRLEALGGRLGRRKGSGPKKERRRTESINSAFAELRECIPNVPADTKLSKIKTLR 137
Query: 234 AAIRYIKYLQELLSSAPDGSTPPA 257
A YI YL ++L+ P A
Sbjct: 138 LATSYIAYLMDVLAKDAQSGDPEA 161
>gi|23111009 myogenic differentiation 1 [Homo sapiens]
Length = 320
Score = 50.4 bits (119), Expect = 2e-06
Identities = 35/92 (38%), Positives = 44/92 (47%), Gaps = 4/92 (4%)
Query: 198 RERQRVKCVNEGYARLRGHLPGALAEKRLSKVETLRAAIRYIKYLQELLSSAPDGSTPPA 257
RER+R+ VNE + L+ + +RL KVE LR AIRYI+ LQ LL D P
Sbjct: 117 RERRRLSKVNEAFETLK-RCTSSNPNQRLPKVEILRNAIRYIEGLQALLR---DQDAAPP 172
Query: 258 SRGLPGTGPCPAPPATPRPDRPGDGEARAPSS 289
P P PP GD +A +P S
Sbjct: 173 GAAAAFYAPGPLPPGRGGEHYSGDSDASSPRS 204
>gi|17981708 twist homolog 2 [Homo sapiens]
Length = 160
Score = 50.1 bits (118), Expect = 3e-06
Identities = 31/80 (38%), Positives = 45/80 (56%), Gaps = 7/80 (8%)
Query: 175 PFPGAFGVYEYPFEPAFIQKR------NERERQRVKCVNEGYARLRGHLPGALAEKRLSK 228
P PG G P +F + + N RERQR + +NE +A LR +P L +LSK
Sbjct: 45 PTPGKRGKKGSPSAQSFEELQSQRILANVRERQRTQSLNEAFAALRKIIP-TLPSDKLSK 103
Query: 229 VETLRAAIRYIKYLQELLSS 248
++TL+ A RYI +L ++L S
Sbjct: 104 IQTLKLAARYIDFLYQVLQS 123
>gi|4885619 T-cell acute lymphocytic leukemia 2 [Homo sapiens]
Length = 108
Score = 49.7 bits (117), Expect = 3e-06
Identities = 28/65 (43%), Positives = 40/65 (61%)
Query: 196 NERERQRVKCVNEGYARLRGHLPGALAEKRLSKVETLRAAIRYIKYLQELLSSAPDGSTP 255
N RER R + VN +A+LR +P +K+LSK ETLR A+RYI +L ++L T
Sbjct: 8 NTRERWRQQNVNSAFAKLRKLIPTHPPDKKLSKNETLRLAMRYINFLVKVLGEQSLQQTG 67
Query: 256 PASRG 260
A++G
Sbjct: 68 VAAQG 72
>gi|4885075 atonal homolog 1 [Homo sapiens]
Length = 354
Score = 49.3 bits (116), Expect = 4e-06
Identities = 26/61 (42%), Positives = 36/61 (59%)
Query: 196 NERERQRVKCVNEGYARLRGHLPGALAEKRLSKVETLRAAIRYIKYLQELLSSAPDGSTP 255
N RER+R+ +N + +LR +P +K+LSK ETL+ A YI L ELL + G P
Sbjct: 165 NARERRRMHGLNHAFDQLRNVIPSFNNDKKLSKYETLQMAQIYINALSELLQTPSGGEQP 224
Query: 256 P 256
P
Sbjct: 225 P 225
>gi|4507363 T-cell acute lymphocytic leukemia 1 [Homo sapiens]
Length = 331
Score = 49.3 bits (116), Expect = 4e-06
Identities = 39/119 (32%), Positives = 54/119 (45%), Gaps = 9/119 (7%)
Query: 196 NERERQRVKCVNEGYARLRGHLPGALAEKRLSKVETLRAAIRYIKYLQELLSSAPDGSTP 255
N RER R + VN +A LR +P +K+LSK E LR A++YI +L +LL+ + T
Sbjct: 193 NSRERWRQQNVNGAFAELRKLIPTHPPDKKLSKNEILRLAMKYINFLAKLLNDQEEEGTQ 252
Query: 256 PASRGLPGTGPCPAPPATPRPDRPGDGEARAPSSLVPE--SSESSCFSPSPFLESEESW 312
A G P G G P L+ + S SSC S S +S+
Sbjct: 253 RAKTG-------KDPVVGAGGGGGGGGGGAPPDDLLQDVLSPNSSCGSSLDGAASPDSY 304
>gi|4507741 twist [Homo sapiens]
Length = 202
Score = 48.9 bits (115), Expect = 6e-06
Identities = 25/53 (47%), Positives = 36/53 (67%), Gaps = 1/53 (1%)
Query: 196 NERERQRVKCVNEGYARLRGHLPGALAEKRLSKVETLRAAIRYIKYLQELLSS 248
N RERQR + +NE +A LR +P L +LSK++TL+ A RYI +L ++L S
Sbjct: 114 NVRERQRTQSLNEAFAALRKIIP-TLPSDKLSKIQTLKLAARYIDFLYQVLQS 165
>gi|116517330 factor in the germline alpha [Homo sapiens]
Length = 219
Score = 48.9 bits (115), Expect = 6e-06
Identities = 23/56 (41%), Positives = 36/56 (64%)
Query: 196 NERERQRVKCVNEGYARLRGHLPGALAEKRLSKVETLRAAIRYIKYLQELLSSAPD 251
N +ER+R+K +N G+ARL+ +P ++ SKV+ L+ A YI+ L +LL A D
Sbjct: 71 NAKERERIKNLNRGFARLKALVPFLPQSRKPSKVDILKGATEYIQVLSDLLEGAKD 126
>gi|116256356 alpha 4 type IV collagen precursor [Homo sapiens]
Length = 1690
Score = 47.8 bits (112), Expect = 1e-05
Identities = 49/175 (28%), Positives = 60/175 (34%), Gaps = 41/175 (23%)
Query: 22 PEAAEGAAGQAGSPGDSAVPPGGSRATDQDKRCRRNKPREKCSRGLPPLSWRTPNSSHQF 81
P G G+ G PG + P G R ++ P S G P + T +
Sbjct: 1202 PVGIPGLKGERGDPGSPGISPPGPRG-------KKGPPGPPGSSGPPGPAGATGRAPKDI 1254
Query: 82 GDPGQPGDPEGREDQGPGAGVAPRGTMNNNFCRALVDRRPLGPPSCMQLGVMPPPRQAPL 141
DPG PG DQGP PRG P G P + L + P L
Sbjct: 1255 PDPGPPG------DQGPPGPDGPRGAPG-----------PPGLPGSVDL-LRGEPGDCGL 1296
Query: 142 P-PAEPLGNVPFLLYPGPAEPPYYDAYAGVFPY------VPFPGAFGVYEYPFEP 189
P P P PGP PP Y + G V FPG G + +P P
Sbjct: 1297 PGPPGP---------PGPPGPPGYKGFPGCDGKDGQKGPVGFPGPQGPHGFPGPP 1342
Score = 37.7 bits (86), Expect = 0.013
Identities = 60/209 (28%), Positives = 72/209 (34%), Gaps = 55/209 (26%)
Query: 22 PEAAEGAAGQAGSPGDSAVPPG--GSRATDQDKRCRRNKPREKCSRGLP-----PLSWRT 74
P AEG G G G S PPG G++ R + +K E+ G P P S
Sbjct: 531 PPGAEGPPGLPGKHGASG-PPGNKGAKGDMVVSRVKGHKG-ERGPDGPPGFPGQPGSHGR 588
Query: 75 PNSSHQFGDPGQPGDPEGREDQGPG--AGVAPRGTMNNNFCRALVDRRPLGPPSCMQLGV 132
+ + GDPG PGD E G G + P G P+GPP LG
Sbjct: 589 DGHAGEKGDPGPPGDHEDATPGGKGFPGPLGPPGKAG-----------PVGPPG---LGF 634
Query: 133 MPPP--RQAPLPPAEPLGNVP-------------FLLYPGPAEPPYYDAYAGV--FP--- 172
PP R P P P P + YPG PP +D G FP
Sbjct: 635 PGPPGERGHPGVPGHPGVRGPDGLKGQKGDTISCNVTYPGRHGPPGFDGPPGPKGFPGPQ 694
Query: 173 ----------YVPFPGAFGVYEYPFEPAF 191
+ PG G E P P F
Sbjct: 695 GAPGLSGSDGHKGRPGTPGTAEIPGPPGF 723
Score = 33.5 bits (75), Expect = 0.25
Identities = 43/146 (29%), Positives = 48/146 (32%), Gaps = 35/146 (23%)
Query: 22 PEAAEGAAGQAGSPGDSAVPPGGSRATDQDKRCRRNKPREKCSRGLPPLSWRTPNSSHQF 81
P+ EG AG G PG PPG S C RG P + Q
Sbjct: 808 PKGREGHAGFPGVPG----PPGHS-----------------CERGAPGIPG-------QP 839
Query: 82 GDPGQPGDPEGREDQGPGAGVAPRGTMNNNFCRALVDRRPL-GPPSCMQLGVMPPPRQAP 140
G PG PG P +G V P G L R GPP G+ P
Sbjct: 840 GLPGYPGSPGAPGGKGQPGDVGPPGPAGMKGLPGLPGRPGAHGPPGLP--GIPGPFGDDG 897
Query: 141 LP----PAEPLGNVPFLLYPGPAEPP 162
LP P P G F +PG P
Sbjct: 898 LPGPPGPKGPRGLPGFPGFPGERGKP 923
Score = 33.1 bits (74), Expect = 0.33
Identities = 46/176 (26%), Positives = 58/176 (32%), Gaps = 40/176 (22%)
Query: 19 KARPEAAEGAAGQAGSPGDSAVPPGGSRATDQDKRCRRNKPREKCSRGLPPLSWRTPNSS 78
K P + G G G PG P G A+ + PR R PP S P
Sbjct: 1074 KGDPASHFGPPGPKGEPGSPGCP-GHFGASGEQGLPGIQGPRGSPGRPGPPGSSGPPGCP 1132
Query: 79 HQFGDPGQPGDPEGREDQGP-----GAGV-------APRGTMNNNFCRALVDRR------ 120
G PG G P D GP G+ P G+ N L ++
Sbjct: 1133 GDHGMPGLRGQPGEMGDPGPRGLQGDPGIPGPPGIKGPSGSPGLNGLHGLKGQKGTKGAS 1192
Query: 121 ---PLGPPSCMQL-------------GVMPP-PRQAPLPPAEPLGNVPFLLYPGPA 159
+GPP + + G+ PP PR PP P + P PGPA
Sbjct: 1193 GLHDVGPPGPVGIPGLKGERGDPGSPGISPPGPRGKKGPPGPPGSSGP----PGPA 1244
Score = 33.1 bits (74), Expect = 0.33
Identities = 42/153 (27%), Positives = 53/153 (34%), Gaps = 32/153 (20%)
Query: 22 PEAAEGAAGQAGSPGDSAVPPGGSRAT--------DQDKRCRRNKPREKCSRGLP----- 68
P G G G PG S PPG + AT D + P RG P
Sbjct: 1222 PPGPRGKKGPPGPPGSSG-PPGPAGATGRAPKDIPDPGPPGDQGPPGPDGPRGAPGPPGL 1280
Query: 69 ----PLSWRTPNSSHQFGDPGQPGDP-----------EGREDQ-GPGAGVAPRGTMNNNF 112
L P G PG PG P +G++ Q GP P+G + F
Sbjct: 1281 PGSVDLLRGEPGDCGLPGPPGPPGPPGPPGYKGFPGCDGKDGQKGPVGFPGPQGP--HGF 1338
Query: 113 CRALVDRRPLGPPSCMQLGVMPPPRQAPLPPAE 145
++ GPP +P PR P PPA+
Sbjct: 1339 PGPPGEKGLPGPPGRKGPTGLPGPRGEPGPPAD 1371
Score = 32.7 bits (73), Expect = 0.43
Identities = 30/105 (28%), Positives = 38/105 (36%), Gaps = 29/105 (27%)
Query: 21 RPEAAEGAAGQAGSPGDSAVPPGGSRATDQDKRCRRNKPREKCSRGLPPLSWRTPNSSHQ 80
RP++A G G+ GSPG P GL L P SS
Sbjct: 427 RPDSAPGKPGKPGSPGLPGAP------------------------GLQGL----PGSSVI 458
Query: 81 FGDPGQPGDPEGREDQGPGAGVAPRGTMNNNFCRALVDRRPLGPP 125
+ G PG + GP G P+G N A + P+GPP
Sbjct: 459 YCSVGNPGPQGIKGKVGPPGGRGPKGEKGNEGLCA-CEPGPMGPP 502
Score = 32.7 bits (73), Expect = 0.43
Identities = 69/292 (23%), Positives = 88/292 (30%), Gaps = 85/292 (29%)
Query: 27 GAAGQAGSPGDSAVPPGGSRATDQDKRCRRNKPREKCSRGLPPLSWRTPNSSHQFGDPGQ 86
G G+ GSPG PPG S D + + NK G P + P + G PG
Sbjct: 1048 GDQGEPGSPG----PPGFS-GIDGARGPKGNK-------GDPASHFGPPGPKGEPGSPGC 1095
Query: 87 PGDPEGREDQGPGAGVAPRGTMNNNFCRALVDRRP-----LGPPSCMQLGVMPPPRQAPL 141
PG +QG PRG+ RP GPP C MP R P
Sbjct: 1096 PGHFGASGEQGLPGIQGPRGSPG----------RPGPPGSSGPPGCPGDHGMPGLRGQPG 1145
Query: 142 PPAEP----LGNVPFLLYP----GPAEPPYYDAYAGVFPYVPFPGAFGVYEY-PFEPAFI 192
+P L P + P GP+ P + G+ GA G+++ P P I
Sbjct: 1146 EMGDPGPRGLQGDPGIPGPPGIKGPSGSPGLNGLHGLKGQKGTKGASGLHDVGPPGPVGI 1205
Query: 193 QKRNERERQRVKCVNEGYARLRGHLPGALAEKRLSKVETLRAAIRYIKYLQELLSSAPDG 252
PG E+ G
Sbjct: 1206 -------------------------PGLKGERG---------------------DPGSPG 1219
Query: 253 STPPASRGLPGTGPCPAPPATPRPDRPGDGEARAPSSLVPESSESSCFSPSP 304
+PP RG G P PP + P P RAP + P P
Sbjct: 1220 ISPPGPRGKKGP---PGPPGSSGPPGPAGATGRAPKDIPDPGPPGDQGPPGP 1268
Score = 31.2 bits (69), Expect = 1.2
Identities = 52/192 (27%), Positives = 63/192 (32%), Gaps = 48/192 (25%)
Query: 22 PEAAEGAAGQAGSPGDSAV----PPG--------GSRATDQDKRCRRNKPREKCSRGLPP 69
P + G GQ G PGD A PPG G + D C P + G+P
Sbjct: 746 PPGSPGVNGQKGIPGDPAFGHLGPPGKRGLSGVPGIKGPRGDPGC----PGAEGPAGIPG 801
Query: 70 -LSWRTPNSSH-QFGDPGQPGDPEGREDQG-------------PGAGVAPRGTMNNNFCR 114
L + P G PG PG P ++G PG+ AP G
Sbjct: 802 FLGLKGPKGREGHAGFPGVPGPPGHSCERGAPGIPGQPGLPGYPGSPGAPGGKGQPG--- 858
Query: 115 ALVDRRPLGPPSCMQLGVMPPPRQAPLPPA-----EPLGNVPFLLYPGPAEPPYYDAYAG 169
D P GP L +P A PP P G+ PGP P + G
Sbjct: 859 ---DVGPPGPAGMKGLPGLPGRPGAHGPPGLPGIPGPFGDDGLPGPPGPKGPRGLPGFPG 915
Query: 170 VFPYVPFPGAFG 181
FPG G
Sbjct: 916 ------FPGERG 921
Score = 30.4 bits (67), Expect = 2.1
Identities = 27/85 (31%), Positives = 33/85 (38%), Gaps = 8/85 (9%)
Query: 27 GAAGQAGSPGDSAVPPGGSRATDQDKRCRRNKPREKCSRGLP-----PLSWRTPNSSHQF 81
G +G+ G GD PPG A D+ + P G+P P P S
Sbjct: 86 GLSGEKGMRGDRG-PPGA--AGDKGDKGPTGVPGFPGLDGIPGHPGPPGPRGKPGMSGHN 142
Query: 82 GDPGQPGDPEGREDQGPGAGVAPRG 106
G G PG P GR GPG + G
Sbjct: 143 GSRGDPGFPGGRGALGPGGPLGHPG 167
Score = 30.4 bits (67), Expect = 2.1
Identities = 47/174 (27%), Positives = 61/174 (35%), Gaps = 15/174 (8%)
Query: 22 PEAAEGAAGQAGSPGDSAVP--PG--GSRATDQDKRC--RRNKPREKCSRGLPPLSWRTP 75
P +G G G G +P PG G R + C + +P EK GLP
Sbjct: 892 PFGDDGLPGPPGPKGPRGLPGFPGFPGERGKPGAEGCPGAKGEPGEKGMSGLPG-DRGLR 950
Query: 76 NSSHQFGDPGQPGDPEGREDQGPGAGVAPRGTMNNNFCRALVDRRPLGPPSCMQLGVMPP 135
+ G PG G+ +G P G ++ F D+ G P MQ P
Sbjct: 951 GAKGAIGPPGDEGEMAIISQKGTPGEPGPPG--DDGFPGERGDK---GTPG-MQGRRGEP 1004
Query: 136 PRQAPLPPAEPLGNVPFLLYPGPAEPPYYDAYAGVFPYVPFPGAFGVYEYPFEP 189
R P P G PGP PP G+ ++ FPG G P P
Sbjct: 1005 GRYGP--PGFHRGEPGEKGQPGPPGPPGPPGSTGLRGFIGFPGLPGDQGEPGSP 1056
Score = 28.9 bits (63), Expect = 6.2
Identities = 52/214 (24%), Positives = 71/214 (33%), Gaps = 59/214 (27%)
Query: 22 PEAAEGAAGQAGSPGDSAVP-------PGGSRATDQDKRCRRNK----------PREKCS 64
P G +G GS GD P PGG +K + N ++
Sbjct: 132 PRGKPGMSGHNGSRGDPGFPGGRGALGPGGPLGHPGEKGEKGNSVFILGAVKGIQGDRGD 191
Query: 65 RGLP--PLSWRT---------PNSSHQFGDPGQPGDPEGREDQGPGAGVAPRGTMNN--- 110
GLP P SW P G PGQPG P + + PG GV +G M +
Sbjct: 192 PGLPGLPGSWGAGGPAGPTGYPGEPGLVGPPGQPGRPGLKGN--PGVGV--KGQMGDPGE 247
Query: 111 ----------------NFCRALVDRRPLGPPSCMQLGVMPPPRQAPLPPAEPLGNVPFLL 154
+FC ++ G P +G+ PP + G
Sbjct: 248 VGQQGSPGPTLLVEPPDFCLYKGEKGIKGIPG--MVGLPGPPGRKGESGIGAKGEKGIPG 305
Query: 155 YPGP-AEP-----PYYDAYAGVFPYVPFPGAFGV 182
+PGP +P P + G V PG FG+
Sbjct: 306 FPGPRGDPGSYGSPGFPGLKGELGLVGDPGLFGL 339
>gi|119508426 alpha 3 type IX collagen [Homo sapiens]
Length = 684
Score = 47.8 bits (112), Expect = 1e-05
Identities = 46/163 (28%), Positives = 58/163 (35%), Gaps = 20/163 (12%)
Query: 22 PEAAEGAAGQAGSPGDSAVP--PGGSRATDQD-KRCRRNKPREKCSRGLPPLSWRTPNSS 78
P +GA G+ G PG++ +P PG T +D + P E+ S G P
Sbjct: 60 PPGPKGAPGKPGKPGEAGLPGLPGVDGLTGRDGPPGPKGAPGERGSLG--------PPGP 111
Query: 79 HQFGDPGQPGDPEGREDQGPGAGVAPRGTMNNNFCRALVDRRPLGPPSCMQLGVMPPPRQ 138
G G PG P GP G+ RG + L P GPP PP
Sbjct: 112 PGLGGKGLPGPPGEAGVSGPPGGIGLRGPPGPSGLPGLPG--PPGPPG-------PPGHP 162
Query: 139 APLPPAEPLGNVPFLLYPGPAEPPYYDAYAGVFPYVPFPGAFG 181
LP P + PGP PP + G Y G G
Sbjct: 163 GVLPEGATDLQCPSICPPGPPGPPGMPGFKGPTGYKGEQGEVG 205
Score = 41.2 bits (95), Expect = 0.001
Identities = 65/258 (25%), Positives = 87/258 (33%), Gaps = 51/258 (19%)
Query: 27 GAAGQAGSPGDSAVPPGGSRATDQDKRCRRNKPREKCSRGLP--PLSWRTPNSSHQFGDP 84
G G+AG G+ VP ++ + R +G P P GDP
Sbjct: 355 GELGEAGPSGEPGVPGDAGMPGERGEAGHRGSAGALGPQGPPGAPGVRGFQGQKGSMGDP 414
Query: 85 GQPGDPEGRE----DQGPGAGVAPRGTMNNNFCRALV-DRRPLGPPSCMQLGVMPPPRQA 139
G PG P+G D+GPG P+G L D+ LGP G++ P ++
Sbjct: 415 GLPG-PQGLRGDVGDRGPGGAAGPKGDQGIAGSDGLPGDKGELGPS-----GLVGPKGES 468
Query: 140 -------PLPPAEPLGNVPFLLYPGPAEPPYYDAYAGVFPYVPFPGAFGVYEYPFEPAFI 192
P P G PGP P GV PG G +P
Sbjct: 469 GSRGELGPKGTQGPNGTSGVQGVPGPPGPLGLQGVPGV------PGITG------KPGVP 516
Query: 193 QKRNERERQRVKC---VNEGYARLRGHLPGALAEKRLSKVETLRAAIRYIKYLQELLSSA 249
K +R R C ++E A+L HL LA + + +
Sbjct: 517 GKEASEQRIRELCGGMISEQIAQLAAHLRKPLAPGSIGRPGP---------------AGP 561
Query: 250 PDGSTPPASRGLPGT-GP 266
P PP S G PG GP
Sbjct: 562 PGPPGPPGSIGHPGARGP 579
Score = 30.4 bits (67), Expect = 2.1
Identities = 49/173 (28%), Positives = 62/173 (35%), Gaps = 43/173 (24%)
Query: 20 ARPEAAEGAAGQAGSPGDSA-VPPGGSRATDQDKRCRRNKPREKCSRG-LPPLSWRTPNS 77
A P+ +G AG G PGD + P G E SRG L P + PN
Sbjct: 435 AGPKGDQGIAGSDGLPGDKGELGPSG----------LVGPKGESGSRGELGPKGTQGPNG 484
Query: 78 SHQFGDPGQPGDPEGREDQG-PGA-------GVAPRGTMN---NNFCRALVD-------- 118
+ G G PG P QG PG GV + C ++
Sbjct: 485 TS--GVQGVPGPPGPLGLQGVPGVPGITGKPGVPGKEASEQRIRELCGGMISEQIAQLAA 542
Query: 119 --RRPLGPPSCMQLGVMPPPRQAPLPPAEPLGNVPFLLYPGPAEPPYYDAYAG 169
R+PL P S + P P P PP P G++ +PG PP Y G
Sbjct: 543 HLRKPLAPGSIGR----PGPAGPPGPPGPP-GSIG---HPGARGPPGYRGPTG 587
Score = 30.0 bits (66), Expect = 2.8
Identities = 36/129 (27%), Positives = 48/129 (37%), Gaps = 22/129 (17%)
Query: 26 EGAAGQAGSPGDSAVPPGGSRATDQDKRCRRNKPREKCSRG-LPPLSWRTPNSSHQFGDP 84
+G G G PG + +P GS Q R R P G P+ +R P G P
Sbjct: 207 DGEKGDPGPPGPAGLP--GSVGL-QGPRGLRGLPGPLGPPGDRGPIGFRGPP-----GIP 258
Query: 85 GQPGDPEGREDQGPGAGVAPRGTMNNNFCRALVDRRPLGPPSCMQLGVMPPPRQAPLPPA 144
G PG R ++GP P+G + P G P GV P + +P
Sbjct: 259 GAPGKAGDRGERGPEGFRGPKGDLGR--------PGPKGTP-----GVAGPSGEPGMPGK 305
Query: 145 EPLGNVPFL 153
+ VP L
Sbjct: 306 DGQNGVPGL 314
Score = 28.9 bits (63), Expect = 6.2
Identities = 37/125 (29%), Positives = 47/125 (37%), Gaps = 32/125 (25%)
Query: 28 AAGQAGSPGDSAVPPGGSRATDQDKRCRRNKPREKCSRGLP----PLSWRTPNSSHQFGD 83
A G G PG + PPG P S G P P +R P + GD
Sbjct: 549 APGSIGRPGPAG-PPG--------------PPGPPGSIGHPGARGPPGYRGPTG--ELGD 591
Query: 84 PGQPGDPEGREDQG-PGAGV-APRGTMNNNFCRALVDRRPLGPPSCMQLGVMPPPRQAPL 141
PG G+ R D+G GAG+ P G + P G P + G P + P
Sbjct: 592 PGPRGNQGDRGDKGAAGAGLDGPEGDQG--------PQGPQGVPGTSKDGQDGAPGE-PG 642
Query: 142 PPAEP 146
PP +P
Sbjct: 643 PPGDP 647
>gi|48255909 basic helix-loop-helix transcription factor 15 [Homo
sapiens]
Length = 199
Score = 47.8 bits (112), Expect = 1e-05
Identities = 27/63 (42%), Positives = 36/63 (57%), Gaps = 3/63 (4%)
Query: 193 QKRNERERQRVKCVNEGYARLRGHLPGALAEKRLSKVETLRAAIRYIKYLQELL---SSA 249
Q N RER R + VN + LR +P +++LSK+ETLR A YI +L +L SA
Sbjct: 75 QAANARERDRTQSVNTAFTALRTLIPTEPVDRKLSKIETLRLASSYIAHLANVLLLGDSA 134
Query: 250 PDG 252
DG
Sbjct: 135 DDG 137
>gi|6382071 diaphanous 2 isoform 12C [Homo sapiens]
Length = 1096
Score = 47.0 bits (110), Expect = 2e-05
Identities = 23/54 (42%), Positives = 33/54 (61%)
Query: 223 EKRLSKVETLRAAIRYIKYLQELLSSAPDGSTPPASRGLPGTGPCPAPPATPRP 276
+KR K++ L A I+ ++ ++LSS+ PPA+ LPG GP P PPA P P
Sbjct: 519 QKRDEKIKELEAEIQQLRTQAQVLSSSSGIPGPPAAPPLPGVGPPPPPPAPPLP 572
Score = 28.9 bits (63), Expect = 6.2
Identities = 37/148 (25%), Positives = 52/148 (35%), Gaps = 31/148 (20%)
Query: 19 KARPEAAEGAAGQAGSPGDSAVPPGGSRATDQDKRCRRNKPREKCSRGLPPLSWRTPNSS 78
KA+ E +E A + D +R Q + +R++ ++ + L + S
Sbjct: 487 KAKVEESEQKAAEFSKKFDEEFT---ARQEAQAELQKRDEKIKELEAEIQQLRTQAQVLS 543
Query: 79 HQFGDPGQPGDPEGREDQGPGAGVAPRGTMNNNFCRALVDRRPLGPPSCMQLGVMPPPRQ 138
G PG P P PG G P P PP + PPP
Sbjct: 544 SSSGIPGPPAAPPL-----PGVGPPPP---------------PPAPPLPGGAPLPPPPPP 583
Query: 139 AP----LPPAEPLGNVPFLLYPGPAEPP 162
P +PP P P LL+ GP PP
Sbjct: 584 LPGMMGIPPPPP----PPLLFGGPPPPP 607
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.136 0.434
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,079,257
Number of Sequences: 37866
Number of extensions: 1351180
Number of successful extensions: 12718
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 187
Number of HSP's successfully gapped in prelim test: 623
Number of HSP's that attempted gapping in prelim test: 8111
Number of HSP's gapped (non-prelim): 4288
length of query: 313
length of database: 18,247,518
effective HSP length: 102
effective length of query: 211
effective length of database: 14,385,186
effective search space: 3035274246
effective search space used: 3035274246
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.