Guide to the Human Genome
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Search of human proteins with 239747474

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239747474 PREDICTED: hypothetical protein XP_002347534 [Homo
sapiens]
         (96 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239752944 PREDICTED: hypothetical protein [Homo sapiens]           195   6e-51
gi|239747474 PREDICTED: hypothetical protein XP_002347534 [Homo ...   195   6e-51
gi|239741346 PREDICTED: hypothetical protein XP_002342203 [Homo ...   195   6e-51
gi|239745938 PREDICTED: hypothetical protein [Homo sapiens]            36   0.006
gi|239756116 PREDICTED: hypothetical protein [Homo sapiens]            35   0.017
gi|239744954 PREDICTED: hypothetical protein XP_002343343 [Homo ...    35   0.017
gi|74027251 tripartite motif-containing 33 protein isoform beta ...    33   0.064
gi|74027249 tripartite motif-containing 33 protein isoform alpha...    33   0.064
gi|59806361 hypothetical protein LOC387104 [Homo sapiens]              32   0.11 
gi|147902746 MEX3A protein [Homo sapiens]                              32   0.11 
gi|166362732 ELK1 protein [Homo sapiens]                               32   0.14 
gi|166362730 ELK1 protein [Homo sapiens]                               32   0.14 
gi|239755634 PREDICTED: hypothetical protein [Homo sapiens]            32   0.14 
gi|239750121 PREDICTED: hypothetical protein XP_002347280 [Homo ...    32   0.14 
gi|239744429 PREDICTED: hypothetical protein XP_002343157 [Homo ...    32   0.14 
gi|82659105 protein tyrosine phosphatase-like, member A [Homo sa...    32   0.14 
gi|239755698 PREDICTED: hypothetical protein [Homo sapiens]            31   0.19 
gi|239750195 PREDICTED: hypothetical protein XP_002347307 [Homo ...    31   0.19 
gi|239744500 PREDICTED: hypothetical protein XP_002343173 [Homo ...    31   0.19 
gi|73476377 LBXCOR1 homolog [Homo sapiens]                             31   0.19 
gi|4809284 interferon regulatory factor 7 isoform b [Homo sapiens]     31   0.19 
gi|210147522 zinc finger, SWIM-type containing 6 [Homo sapiens]        31   0.19 
gi|168229226 hypothetical protein LOC401399 [Homo sapiens]             31   0.19 
gi|170932550 FLT3-interacting zinc finger 1 [Homo sapiens]             31   0.19 
gi|4504191 mutS homolog 6 [Homo sapiens]                               31   0.24 
gi|5902104 SRY (sex determining region Y)-box 10 [Homo sapiens]        31   0.24 
gi|122937233 discs, large (Drosophila) homolog-associated protei...    31   0.24 
gi|4501957 alpha-1D-adrenergic receptor [Homo sapiens]                 31   0.24 
gi|20127580 BTB (POZ) domain containing 2 [Homo sapiens]               31   0.24 
gi|194097411 transmembrane protein 119 [Homo sapiens]                  31   0.24 

>gi|239752944 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 96

 Score =  195 bits (496), Expect = 6e-51
 Identities = 96/96 (100%), Positives = 96/96 (100%)

Query: 1  MIQAPADFTRSCSISTALWLPNTRRENLLTVGWSSVPRCLLLGSGPDLGIGPEAAVAGGG 60
          MIQAPADFTRSCSISTALWLPNTRRENLLTVGWSSVPRCLLLGSGPDLGIGPEAAVAGGG
Sbjct: 1  MIQAPADFTRSCSISTALWLPNTRRENLLTVGWSSVPRCLLLGSGPDLGIGPEAAVAGGG 60

Query: 61 ATGGTASSPGVAPSLAPAAGRCSASMAPTPLTRSAS 96
          ATGGTASSPGVAPSLAPAAGRCSASMAPTPLTRSAS
Sbjct: 61 ATGGTASSPGVAPSLAPAAGRCSASMAPTPLTRSAS 96


>gi|239747474 PREDICTED: hypothetical protein XP_002347534 [Homo
          sapiens]
          Length = 96

 Score =  195 bits (496), Expect = 6e-51
 Identities = 96/96 (100%), Positives = 96/96 (100%)

Query: 1  MIQAPADFTRSCSISTALWLPNTRRENLLTVGWSSVPRCLLLGSGPDLGIGPEAAVAGGG 60
          MIQAPADFTRSCSISTALWLPNTRRENLLTVGWSSVPRCLLLGSGPDLGIGPEAAVAGGG
Sbjct: 1  MIQAPADFTRSCSISTALWLPNTRRENLLTVGWSSVPRCLLLGSGPDLGIGPEAAVAGGG 60

Query: 61 ATGGTASSPGVAPSLAPAAGRCSASMAPTPLTRSAS 96
          ATGGTASSPGVAPSLAPAAGRCSASMAPTPLTRSAS
Sbjct: 61 ATGGTASSPGVAPSLAPAAGRCSASMAPTPLTRSAS 96


>gi|239741346 PREDICTED: hypothetical protein XP_002342203 [Homo
          sapiens]
          Length = 96

 Score =  195 bits (496), Expect = 6e-51
 Identities = 96/96 (100%), Positives = 96/96 (100%)

Query: 1  MIQAPADFTRSCSISTALWLPNTRRENLLTVGWSSVPRCLLLGSGPDLGIGPEAAVAGGG 60
          MIQAPADFTRSCSISTALWLPNTRRENLLTVGWSSVPRCLLLGSGPDLGIGPEAAVAGGG
Sbjct: 1  MIQAPADFTRSCSISTALWLPNTRRENLLTVGWSSVPRCLLLGSGPDLGIGPEAAVAGGG 60

Query: 61 ATGGTASSPGVAPSLAPAAGRCSASMAPTPLTRSAS 96
          ATGGTASSPGVAPSLAPAAGRCSASMAPTPLTRSAS
Sbjct: 61 ATGGTASSPGVAPSLAPAAGRCSASMAPTPLTRSAS 96


>gi|239745938 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 336

 Score = 36.2 bits (82), Expect = 0.006
 Identities = 31/79 (39%), Positives = 34/79 (43%), Gaps = 7/79 (8%)

Query: 13  SISTALWLPNTRRENLLTVGWSSVPRCLLLGSGPDLGIGPEAAVAGGGATGGTASSPGVA 72
           S +TA  LP  RR    T    S  R L    GPDLG G      GGGA  G  +  G  
Sbjct: 187 SSATAWRLPQPRRRRRPTCPCCSRCRELSPPMGPDLGGG------GGGAGAGAGAGAGAQ 240

Query: 73  PSLAPAAGRCSASMAPTPL 91
            S A AAG C   +   PL
Sbjct: 241 RSAAEAAG-CLGCLPRLPL 258


>gi|239756116 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 194

 Score = 34.7 bits (78), Expect = 0.017
 Identities = 21/58 (36%), Positives = 26/58 (44%), Gaps = 7/58 (12%)

Query: 37  PRCLLLGSGPDLGIGPEAAVAGGGATGGT-------ASSPGVAPSLAPAAGRCSASMA 87
           P CLL    P LG     A AGGGAT G+        ++P    S  P++ R  A  A
Sbjct: 66  PACLLKSCSPGLGTRSSPAAAGGGATSGSPRVVTPEPAAPATQVSWPPSSARLLAGPA 123


>gi|239744954 PREDICTED: hypothetical protein XP_002343343 [Homo
           sapiens]
          Length = 194

 Score = 34.7 bits (78), Expect = 0.017
 Identities = 21/58 (36%), Positives = 26/58 (44%), Gaps = 7/58 (12%)

Query: 37  PRCLLLGSGPDLGIGPEAAVAGGGATGGT-------ASSPGVAPSLAPAAGRCSASMA 87
           P CLL    P LG     A AGGGAT G+        ++P    S  P++ R  A  A
Sbjct: 66  PACLLKSCSPGLGTRSSPAAAGGGATSGSPRVVTPEPAAPATQVSWPPSSARLLAGPA 123


>gi|74027251 tripartite motif-containing 33 protein isoform beta
           [Homo sapiens]
          Length = 1110

 Score = 32.7 bits (73), Expect = 0.064
 Identities = 20/47 (42%), Positives = 22/47 (46%), Gaps = 1/47 (2%)

Query: 44  SGPDLGIGPEAAVAGGGATGGTASSPGVAPSLAPAAGRCSASMAPTP 90
           SG        AA  G G  GG  S+P  AP+ APA G  SA   P P
Sbjct: 72  SGSAQAASSPAASVGTGVAGGAVSTPAPAPASAPAPGP-SAGPPPGP 117


>gi|74027249 tripartite motif-containing 33 protein isoform alpha
           [Homo sapiens]
          Length = 1127

 Score = 32.7 bits (73), Expect = 0.064
 Identities = 20/47 (42%), Positives = 22/47 (46%), Gaps = 1/47 (2%)

Query: 44  SGPDLGIGPEAAVAGGGATGGTASSPGVAPSLAPAAGRCSASMAPTP 90
           SG        AA  G G  GG  S+P  AP+ APA G  SA   P P
Sbjct: 72  SGSAQAASSPAASVGTGVAGGAVSTPAPAPASAPAPGP-SAGPPPGP 117


>gi|59806361 hypothetical protein LOC387104 [Homo sapiens]
          Length = 947

 Score = 32.0 bits (71), Expect = 0.11
 Identities = 17/39 (43%), Positives = 18/39 (46%)

Query: 42  LGSGPDLGIGPEAAVAGGGATGGTASSPGVAPSLAPAAG 80
           LG  P LG G      GGGA GG+    G AP   P  G
Sbjct: 157 LGEPPPLGEGGGGGGEGGGAGGGSGEREGGAPQPPPPRG 195


>gi|147902746 MEX3A protein [Homo sapiens]
          Length = 520

 Score = 32.0 bits (71), Expect = 0.11
 Identities = 21/55 (38%), Positives = 25/55 (45%), Gaps = 1/55 (1%)

Query: 39  CLL-LGSGPDLGIGPEAAVAGGGATGGTASSPGVAPSLAPAAGRCSASMAPTPLT 92
           CLL LG  P    G +    GGGA    A+ P  AP   PAA   + + AP   T
Sbjct: 46  CLLGLGEPPAPTAGEDGGGGGGGAPAQPAAPPQPAPPPPPAAPPAAPTAAPAAQT 100


>gi|166362732 ELK1 protein [Homo sapiens]
          Length = 428

 Score = 31.6 bits (70), Expect = 0.14
 Identities = 21/60 (35%), Positives = 25/60 (41%), Gaps = 2/60 (3%)

Query: 37  PRCLLLGSGPDL--GIGPEAAVAGGGATGGTASSPGVAPSLAPAAGRCSASMAPTPLTRS 94
           PR L L   P L  G GPE     G  +G  A  P + PSL P        + P+ L  S
Sbjct: 316 PRDLELPLSPSLLGGPGPERTPGSGSGSGLQAPGPALTPSLLPTHTLTPVLLTPSSLPPS 375


>gi|166362730 ELK1 protein [Homo sapiens]
          Length = 428

 Score = 31.6 bits (70), Expect = 0.14
 Identities = 21/60 (35%), Positives = 25/60 (41%), Gaps = 2/60 (3%)

Query: 37  PRCLLLGSGPDL--GIGPEAAVAGGGATGGTASSPGVAPSLAPAAGRCSASMAPTPLTRS 94
           PR L L   P L  G GPE     G  +G  A  P + PSL P        + P+ L  S
Sbjct: 316 PRDLELPLSPSLLGGPGPERTPGSGSGSGLQAPGPALTPSLLPTHTLTPVLLTPSSLPPS 375


>gi|239755634 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 449

 Score = 31.6 bits (70), Expect = 0.14
 Identities = 21/40 (52%), Positives = 22/40 (55%), Gaps = 3/40 (7%)

Query: 52  PEAAVAGGGATGGTASSPGVAPSLAPAAGRCSASMAPTPL 91
           P  A A  GAT GTA+ PG  PS   A    SAS  PTPL
Sbjct: 277 PGPAPAAAGATRGTAAPPGRDPS---AWFLDSASACPTPL 313


>gi|239750121 PREDICTED: hypothetical protein XP_002347280 [Homo
           sapiens]
          Length = 402

 Score = 31.6 bits (70), Expect = 0.14
 Identities = 21/40 (52%), Positives = 22/40 (55%), Gaps = 3/40 (7%)

Query: 52  PEAAVAGGGATGGTASSPGVAPSLAPAAGRCSASMAPTPL 91
           P  A A  GAT GTA+ PG  PS   A    SAS  PTPL
Sbjct: 230 PGPAPAAAGATRGTAAPPGRDPS---AWFLDSASACPTPL 266


>gi|239744429 PREDICTED: hypothetical protein XP_002343157 [Homo
           sapiens]
          Length = 449

 Score = 31.6 bits (70), Expect = 0.14
 Identities = 21/40 (52%), Positives = 22/40 (55%), Gaps = 3/40 (7%)

Query: 52  PEAAVAGGGATGGTASSPGVAPSLAPAAGRCSASMAPTPL 91
           P  A A  GAT GTA+ PG  PS   A    SAS  PTPL
Sbjct: 277 PGPAPAAAGATRGTAAPPGRDPS---AWFLDSASACPTPL 313


>gi|82659105 protein tyrosine phosphatase-like, member A [Homo
          sapiens]
          Length = 288

 Score = 31.6 bits (70), Expect = 0.14
 Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 1/36 (2%)

Query: 53 EAAVAGGGA-TGGTASSPGVAPSLAPAAGRCSASMA 87
          EAA AG G+   G A SP     L+P + RC+A+MA
Sbjct: 6  EAAAAGSGSRAAGWAGSPPTLLPLSPTSPRCAATMA 41


>gi|239755698 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 117

 Score = 31.2 bits (69), Expect = 0.19
 Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 9/48 (18%)

Query: 49  GIGPEAAVAGGGATGGTASSPGVAP---------SLAPAAGRCSASMA 87
           G G ++   GGG+ GG  S P V           +  PA+GRC  S++
Sbjct: 57  GSGTQSQAGGGGSGGGAPSFPSVGTLTLPGEATGARTPASGRCGTSLS 104


>gi|239750195 PREDICTED: hypothetical protein XP_002347307 [Homo
           sapiens]
          Length = 117

 Score = 31.2 bits (69), Expect = 0.19
 Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 9/48 (18%)

Query: 49  GIGPEAAVAGGGATGGTASSPGVAP---------SLAPAAGRCSASMA 87
           G G ++   GGG+ GG  S P V           +  PA+GRC  S++
Sbjct: 57  GSGTQSQAGGGGSGGGAPSFPSVGTLTLPGEATGARTPASGRCGTSLS 104


>gi|239744500 PREDICTED: hypothetical protein XP_002343173 [Homo
           sapiens]
          Length = 117

 Score = 31.2 bits (69), Expect = 0.19
 Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 9/48 (18%)

Query: 49  GIGPEAAVAGGGATGGTASSPGVAP---------SLAPAAGRCSASMA 87
           G G ++   GGG+ GG  S P V           +  PA+GRC  S++
Sbjct: 57  GSGTQSQAGGGGSGGGAPSFPSVGTLTLPGEATGARTPASGRCGTSLS 104


>gi|73476377 LBXCOR1 homolog [Homo sapiens]
          Length = 921

 Score = 31.2 bits (69), Expect = 0.19
 Identities = 21/41 (51%), Positives = 23/41 (56%), Gaps = 3/41 (7%)

Query: 41  LLGSGPDLGIGPEAAVAGGGA-TGGTASSPGVAPSLAPAAG 80
           +LG+G   G GP     GGGA TGG A  PG A  L P AG
Sbjct: 369 VLGAGEPKG-GPGTGSGGGGAGTGGGAGGPG-ASHLPPGAG 407


>gi|4809284 interferon regulatory factor 7 isoform b [Homo sapiens]
          Length = 474

 Score = 31.2 bits (69), Expect = 0.19
 Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 9/69 (13%)

Query: 26  ENLLTVGWSSVPRCLLLGSGPDLGIGPEAAVAGGGATGGTASSPG----VAPSLAPAAGR 81
           ++LLT  W + P   +    P  G G E     G   GG A++P       P L+P+   
Sbjct: 194 DHLLTASWGADP---VPTKAP--GEGQEGLPLTGACAGGEAAAPESPHQAEPYLSPSPSA 248

Query: 82  CSASMAPTP 90
           C+A   P+P
Sbjct: 249 CTAVQEPSP 257


>gi|210147522 zinc finger, SWIM-type containing 6 [Homo sapiens]
          Length = 1215

 Score = 31.2 bits (69), Expect = 0.19
 Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 3/45 (6%)

Query: 43  GSGPDLGIGPEAAVAGGGATGGTASSPGVAPSLAPAAGRCSASMA 87
           G G D G G     AGGG  GG++SSP    + A +A   +A+ A
Sbjct: 136 GPGDDSGGG---GGAGGGGGGGSSSSPAATSAAATSAAAAAAAAA 177


>gi|168229226 hypothetical protein LOC401399 [Homo sapiens]
          Length = 899

 Score = 31.2 bits (69), Expect = 0.19
 Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 8/55 (14%)

Query: 39  CLLLGSGPDLGIGPEAAVAGGGATG--GTASSPGVAPSLAPAAGRCSASMAPTPL 91
           C L G GPDL       + GGG  G  G A++P  +P+ +P +        P+P+
Sbjct: 678 CALAGPGPDL------LLQGGGCRGFEGAAANPAPSPASSPCSDYTVDFRPPSPI 726


>gi|170932550 FLT3-interacting zinc finger 1 [Homo sapiens]
          Length = 496

 Score = 31.2 bits (69), Expect = 0.19
 Identities = 19/42 (45%), Positives = 23/42 (54%), Gaps = 1/42 (2%)

Query: 43  GSGPDLGIGPEAAVAGGGATGGTASSPGVAPSLAP-AAGRCS 83
           GSG   G GPE A AG G+ G   ++   A SL P A G C+
Sbjct: 165 GSGAGGGEGPEGAGAGLGSWGLAEAAAAAAASLPPFACGACA 206


>gi|4504191 mutS homolog 6 [Homo sapiens]
          Length = 1360

 Score = 30.8 bits (68), Expect = 0.24
 Identities = 18/51 (35%), Positives = 23/51 (45%)

Query: 46 PDLGIGPEAAVAGGGATGGTASSPGVAPSLAPAAGRCSASMAPTPLTRSAS 96
          P L    +A+       G  A++PG +PS    A    A   P PL RSAS
Sbjct: 15 PALSDANKASARASREGGRAAAAPGASPSPGGDAAWSEAGPGPRPLARSAS 65


>gi|5902104 SRY (sex determining region Y)-box 10 [Homo sapiens]
          Length = 466

 Score = 30.8 bits (68), Expect = 0.24
 Identities = 18/37 (48%), Positives = 20/37 (54%), Gaps = 6/37 (16%)

Query: 34 SSVPRCLLLGSGPDLGIGPEAAVAGGGATGGTASSPG 70
          S  PRCL  GS P L  GP+    GGG   G  +SPG
Sbjct: 17 SEEPRCLSPGSAPSL--GPD----GGGGGSGLRASPG 47


>gi|122937233 discs, large (Drosophila) homolog-associated protein
          3 [Homo sapiens]
          Length = 979

 Score = 30.8 bits (68), Expect = 0.24
 Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 2/38 (5%)

Query: 40 LLLGSGPDLGIGPEAAVAGGGATGGTASSPGVAPSLAP 77
          L L  GP   +GPE   AG G  GG+++ P + P   P
Sbjct: 63 LSLSEGPS--VGPEGGPAGAGVGGGSSTFPRMYPGQGP 98


>gi|4501957 alpha-1D-adrenergic receptor [Homo sapiens]
          Length = 572

 Score = 30.8 bits (68), Expect = 0.24
 Identities = 14/32 (43%), Positives = 18/32 (56%)

Query: 49 GIGPEAAVAGGGATGGTASSPGVAPSLAPAAG 80
          G  P+++  G  A GG  S+ G APS  PA G
Sbjct: 13 GPRPDSSAGGSSAGGGGGSAGGAAPSEGPAVG 44



 Score = 29.6 bits (65), Expect = 0.54
 Identities = 15/35 (42%), Positives = 17/35 (48%)

Query: 43 GSGPDLGIGPEAAVAGGGATGGTASSPGVAPSLAP 77
          G  PD   G  +A  GGG+ GG A S G A    P
Sbjct: 13 GPRPDSSAGGSSAGGGGGSAGGAAPSEGPAVGGVP 47


>gi|20127580 BTB (POZ) domain containing 2 [Homo sapiens]
          Length = 525

 Score = 30.8 bits (68), Expect = 0.24
 Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 1/46 (2%)

Query: 46 PDLGIGPEAAVAGGGATGGTAS-SPGVAPSLAPAAGRCSASMAPTP 90
          P +G+GP    + G +    A+ +PG A + A AA   +A+  PTP
Sbjct: 14 PGVGVGPGTGGSPGPSANAAATPAPGNAAAAAAAAAAAAAAPGPTP 59


>gi|194097411 transmembrane protein 119 [Homo sapiens]
          Length = 283

 Score = 30.8 bits (68), Expect = 0.24
 Identities = 27/61 (44%), Positives = 30/61 (49%), Gaps = 10/61 (16%)

Query: 40 LLLGSGP--DLGIGPEAA-----VAGGG-ATGGTASSPGVAPSLAPAAGRCSASMAPTPL 91
          LLLGS P  D    P  A     VAG G A G +ASSP + P   PA      SM P P+
Sbjct: 15 LLLGSVPATDARSVPLKATFLEDVAGSGEAEGSSASSPSLPPPWTPALS--PTSMGPQPI 72

Query: 92 T 92
          T
Sbjct: 73 T 73


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.314    0.129    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,691,424
Number of Sequences: 37866
Number of extensions: 244097
Number of successful extensions: 2091
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 135
Number of HSP's that attempted gapping in prelim test: 1752
Number of HSP's gapped (non-prelim): 444
length of query: 96
length of database: 18,247,518
effective HSP length: 67
effective length of query: 29
effective length of database: 15,710,496
effective search space: 455604384
effective search space used: 455604384
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.8 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
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