Guide to the Human Genome
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Name: LOC100291099 Sequence: fasta or formatted (181aa) NCBI GI: 239747378
Description:

PREDICTED: hypothetical protein XP_002346573

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            14.9         27           3
 C cysteine            3.9          7           2
 D aspartate           3.3          6           1
 E glutamate           3.3          6           1
 F phenylalanine       2.2          4           1
 G glycine             9.9         18           3
 H histidine           3.3          6           1
 I isoleucine          0.6          1           1
 K lysine              3.3          6           1
 L leucine             5.5         10           1
 M methionine          1.1          2           1
 N asparagine          1.1          2           1
 P proline            11.6         21           3
 Q glutamine           3.9          7           2
 R arginine            8.8         16           2
 S serine             13.3         24           2
 T threonine           5.0          9           1
 V valine              3.3          6           1
 W tryptophan          0.6          1           1
 Y tyrosine            1.1          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002346573 
LOC100293749          1.000   PREDICTED: hypothetical protein 
LOC100289437          1.000   PREDICTED: hypothetical protein XP_002342135 
RXRB                  0.043   retinoid X receptor, beta 
TNKS                  0.040   tankyrase, TRF1-interacting ankyrin-related ADP-ribo...
MUPCDH                0.034   mucin and cadherin-like isoform 1 
FAM171A2              0.031   family with sequence similarity 171, member A2 [Hom...
BRSK1                 0.031   BR serine/threonine kinase 1 
RGS3                  0.028   regulator of G-protein signalling 3 isoform 6 [Homo...
RGS3                  0.028   regulator of G-protein signalling 3 isoform 1 
FLJ22184              0.028   PREDICTED: hypothetical protein FLJ22184 
FLJ22184              0.028   PREDICTED: hypothetical protein FLJ22184 
FLJ22184              0.028   PREDICTED: hypothetical protein LOC80164 
RGS3                  0.028   regulator of G-protein signalling 3 isoform 2 
WIPF3                 0.028   WAS/WASL interacting protein family, member 3 [Homo...
LOC100290879          0.026   PREDICTED: hypothetical protein XP_002347499 
LOC100287141          0.026   PREDICTED: hypothetical protein XP_002343631 
LOC100286940          0.026   PREDICTED: hypothetical protein XP_002343317 
TAF4                  0.026   TBP-associated factor 4 
LOC100293604          0.026   PREDICTED: hypothetical protein 
LOC100289721          0.026   PREDICTED: hypothetical protein XP_002347280 
LOC100287837          0.026   PREDICTED: hypothetical protein XP_002343157 
LOC100288108          0.023   PREDICTED: hypothetical protein 
LOC100288108          0.023   PREDICTED: hypothetical protein XP_002342919 
TNK2                  0.023   tyrosine kinase, non-receptor, 2 isoform 2 
C7orf51               0.023   hypothetical protein FLJ37538 
COLQ                  0.023   acetylcholinesterase collagen-like tail subunit iso...
COLQ                  0.023   acetylcholinesterase collagen-like tail subunit isof...
COLQ                  0.023   acetylcholinesterase collagen-like tail subunit isof...
COL1A1                0.023   alpha 1 type I collagen preproprotein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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