Guide to the Human Genome
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Name: LOC100294398 Sequence: fasta or formatted (153aa) NCBI GI: 239747195
Description:

PREDICTED: similar to PITSLRE protein kinase beta SV2

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.3          5           1
 C cysteine            0.7          1           1
 D aspartate           9.2         14           2
 E glutamate          18.3         28           2
 F phenylalanine       0.0          0           0
 G glycine             2.0          3           1
 H histidine           4.6          7           2
 I isoleucine          3.3          5           1
 K lysine             14.4         22           2
 L leucine             3.9          6           1
 M methionine          3.3          5           1
 N asparagine          1.3          2           1
 P proline             2.0          3           2
 Q glutamine           3.9          6           2
 R arginine           17.6         27           2
 S serine              5.9          9           1
 T threonine           1.3          2           1
 V valine              2.0          3           1
 W tryptophan          2.6          4           1
 Y tyrosine            0.7          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to PITSLRE protein kinase beta S... 
CDC2L2                0.983   cell division cycle 2-like 2 isoform 4 
CDC2L2                0.938   cell division cycle 2-like 2 isoform 1 
CDC2L1                0.935   cell division cycle 2-like 1 (PITSLRE proteins) isof...
CDC2L1                0.935   cell division cycle 2-like 1 (PITSLRE proteins) isof...
LOC100133692          0.925   PREDICTED: similar to cell division cycle 2-like 1 ...
CDC2L1                0.904   cell division cycle 2-like 1 (PITSLRE proteins) isof...
CDC2L1                0.675   cell division cycle 2-like 1 (PITSLRE proteins) isof...
CDC2L1                0.661   cell division cycle 2-like 1 (PITSLRE proteins) isof...
EIF5B                 0.144   eukaryotic translation initiation factor 5B 
LOC100133599          0.134   PREDICTED: hypothetical protein 
LOC100133599          0.127   PREDICTED: hypothetical protein 
ZC3H13                0.120   zinc finger CCCH-type containing 13 
TCHH                  0.103   trichohyalin 
LOC100286959          0.099   PREDICTED: hypothetical protein XP_002343921 
LOC100294088          0.099   PREDICTED: hypothetical protein, partial 
ZC3H18                0.096   zinc finger CCCH-type containing 18 
SLTM                  0.092   modulator of estrogen induced transcription isoform ...
SLTM                  0.092   modulator of estrogen induced transcription isoform ...
RBM25                 0.092   RNA binding motif protein 25 
GIGYF2                0.092   GRB10 interacting GYF protein 2 isoform c 
GIGYF2                0.092   GRB10 interacting GYF protein 2 isoform a 
GIGYF2                0.092   GRB10 interacting GYF protein 2 isoform b 
GIGYF2                0.092   GRB10 interacting GYF protein 2 isoform b 
LOC100288837          0.092   PREDICTED: hypothetical protein XP_002343931, parti...
LOC727832             0.089   golgi autoantigen, golgin subfamily a-like 
ENAH                  0.089   enabled homolog isoform a 
ENAH                  0.089   enabled homolog isoform b 
LOC283685             0.086   PREDICTED: golgi autoantigen, golgin subfamily a-li...
LOC440243             0.086   PREDICTED: Putative golgin subfamily A member 6-lik...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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