Search of human proteins with 239747178

Search of human proteins with 239747178

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239747178 PREDICTED: hypothetical protein XP_002343932 [Homo
sapiens]
         (206 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239747178 PREDICTED: hypothetical protein XP_002343932 [Homo ...   412   e-115
gi|18079216 CASK interacting protein 1 [Homo sapiens]                  40   0.001
gi|162329583 cleavage and polyadenylation specific factor 6, 68 ...    40   0.001
gi|169207312 PREDICTED: hypothetical protein [Homo sapiens]            39   0.003
gi|239750650 PREDICTED: hypothetical protein [Homo sapiens]            39   0.003
gi|89037350 PREDICTED: hypothetical protein [Homo sapiens]             39   0.003
gi|91208420 bassoon protein [Homo sapiens]                             39   0.003
gi|153792074 proline rich 12 [Homo sapiens]                            39   0.004
gi|4507961 zinc finger protein 36, C3H type, homolog [Homo sapiens]    38   0.007
gi|24308326 BR serine/threonine kinase 1 [Homo sapiens]                37   0.009
gi|150170729 microtubule associated serine/threonine kinase 3 [H...    37   0.012
gi|120587025 SH3 and multiple ankyrin repeat domains 1 [Homo sap...    37   0.012
gi|28559039 mediator complex subunit 1 [Homo sapiens]                  37   0.015
gi|41281612 zinc finger protein 828 [Homo sapiens]                     36   0.020
gi|20143482 melanoma antigen family E, 1 [Homo sapiens]                36   0.026
gi|187937179 apoptosis-associated tyrosine kinase [Homo sapiens]       35   0.034
gi|156151396 heterogeneous nuclear ribonucleoprotein R isoform 3...    35   0.034
gi|156151394 heterogeneous nuclear ribonucleoprotein R isoform 1...    35   0.034
gi|156151392 heterogeneous nuclear ribonucleoprotein R isoform 4...    35   0.034
gi|5031755 heterogeneous nuclear ribonucleoprotein R isoform 2 [...    35   0.034
gi|16933557 dachsous 1 precursor [Homo sapiens]                        35   0.034
gi|110556644 zinc finger protein, multitype 1 [Homo sapiens]           35   0.045
gi|156071470 hyperpolarization activated cyclic nucleotide-gated...    35   0.059
gi|4758404 FSHD region gene 1 [Homo sapiens]                           35   0.059
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]        34   0.077
gi|47132519 Ras association and pleckstrin homology domains 1 is...    34   0.10 
gi|58530845 zyxin [Homo sapiens]                                       34   0.10 
gi|4508047 zyxin [Homo sapiens]                                        34   0.10 
gi|150418009 transforming, acidic coiled-coil containing protein...    34   0.10 
gi|239752594 PREDICTED: hypothetical protein, partial [Homo sapi...    33   0.13 

>gi|239747178 PREDICTED: hypothetical protein XP_002343932 [Homo
           sapiens]
          Length = 206

 Score =  412 bits (1059), Expect = e-115
 Identities = 206/206 (100%), Positives = 206/206 (100%)

Query: 1   MPPPRLAFFLTPEPVTRATITLHLSPHSHRTHDVRGPQHAAPPQANEGSLSRFPPPRGPS 60
           MPPPRLAFFLTPEPVTRATITLHLSPHSHRTHDVRGPQHAAPPQANEGSLSRFPPPRGPS
Sbjct: 1   MPPPRLAFFLTPEPVTRATITLHLSPHSHRTHDVRGPQHAAPPQANEGSLSRFPPPRGPS 60

Query: 61  PARSSSGRPFHSATGSPATASTGASGGLYSPPQQKLGSGNLSHSAFGSRQRQVLDRSTLS 120
           PARSSSGRPFHSATGSPATASTGASGGLYSPPQQKLGSGNLSHSAFGSRQRQVLDRSTLS
Sbjct: 61  PARSSSGRPFHSATGSPATASTGASGGLYSPPQQKLGSGNLSHSAFGSRQRQVLDRSTLS 120

Query: 121 GSVYFASTSDPPRPGAAPGHILVLSRLQPLRAEVSRSRLLRVEYSHVKSTKLVFKGTKAK 180
           GSVYFASTSDPPRPGAAPGHILVLSRLQPLRAEVSRSRLLRVEYSHVKSTKLVFKGTKAK
Sbjct: 121 GSVYFASTSDPPRPGAAPGHILVLSRLQPLRAEVSRSRLLRVEYSHVKSTKLVFKGTKAK 180

Query: 181 RRDGKKVSRSELKPLPLRTLSRSLAS 206
           RRDGKKVSRSELKPLPLRTLSRSLAS
Sbjct: 181 RRDGKKVSRSELKPLPLRTLSRSLAS 206


>gi|18079216 CASK interacting protein 1 [Homo sapiens]
          Length = 1431

 Score = 40.0 bits (92), Expect = 0.001
 Identities = 34/120 (28%), Positives = 48/120 (40%), Gaps = 15/120 (12%)

Query: 25   SPHSHRTHDVRGPQHAAPPQANEGSLSRFPPPRGPSPARSSSGRPFHSATGSPA-TASTG 83
            SP   R H    P    PP          PPP  P P ++ +G P  SA  SPA + +  
Sbjct: 1257 SPEVKRAHGTPPPVSPKPP----------PPPTAPKPVKAVAGLPSGSAGPSPAPSPARQ 1306

Query: 84   ASGGLYSPP--QQKLGSGNLSHSAFGSRQRQVLDRSTLSGSVYFASTSDPPRP--GAAPG 139
                L  PP     LG+      + G+    V  +   + +   A+ + PP P  GA+PG
Sbjct: 1307 PPAALAKPPGTPPSLGASPAKPPSPGAPALHVPAKPPRAAAAAAAAAAAPPAPPEGASPG 1366


>gi|162329583 cleavage and polyadenylation specific factor 6, 68 kD
           subunit [Homo sapiens]
          Length = 551

 Score = 40.0 bits (92), Expect = 0.001
 Identities = 39/137 (28%), Positives = 56/137 (40%), Gaps = 21/137 (15%)

Query: 2   PPPRLAFFLTPEPVTRATITLHLSPHSHRTHDVRGPQHAAPPQANEGSLSRFPPPRGPSP 61
           PPP   F   P       +TL   PH      + GP   APP A   + + FPPP     
Sbjct: 317 PPPPGPFPPRPPGPLGPPLTLAPPPH------LPGPPPGAPPPAPHVNPAFFPPP----- 365

Query: 62  ARSSSGRPFHSATGSPATASTGA----SGGLYSPPQQKLGSGN--LSHSAFGS--RQRQV 113
             ++SG P   + G P T   G       G Y PP +++ +    LS + F     + + 
Sbjct: 366 --TNSGMPTSDSRGPPPTDPYGRPPPYDRGDYGPPGREMDTARTPLSEAEFEEIMNRNRA 423

Query: 114 LDRSTLSGSVYFASTSD 130
           +  S +S +V  AS  D
Sbjct: 424 ISSSAISRAVSDASAGD 440


>gi|169207312 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 414

 Score = 38.9 bits (89), Expect = 0.003
 Identities = 32/108 (29%), Positives = 44/108 (40%), Gaps = 10/108 (9%)

Query: 2   PPPRLAFFLTPEPVTR---ATITLHLSPHSHRTHDVRGPQHAAPPQANEGSLSRFPPPRG 58
           P PR + FL+  P TR   AT + H +P       +R P     P   E  L R  PPR 
Sbjct: 242 PLPRTSSFLSEVPSTRPLCATSSSHSAPLPFFWSPLRNPSPRPAPACGELRLGRLSPPRA 301

Query: 59  PSPARSSSG-----RPFHSATGSPATASTGASG--GLYSPPQQKLGSG 99
            +   SS G         +    PA  +  A+G  G  +P + + G G
Sbjct: 302 DTGGSSSGGCSGPDSKHRTLPAPPAPTAWPAAGAPGAPNPAESRRGPG 349



 Score = 31.6 bits (70), Expect = 0.50
 Identities = 38/154 (24%), Positives = 54/154 (35%), Gaps = 19/154 (12%)

Query: 4   PRLAFFLTPEPVTRATITLHLSPHSHRTHDV-----RGPQHAAPPQANEGSLSRFPPPRG 58
           PRLA  L+ +P  R + +    P   R  D+     RGP H+  P     +  R    R 
Sbjct: 24  PRLAEALS-QPTLRHSASALRPPRLSRGKDLKPRCGRGPAHSPDPGEGCEAWRRLSADRW 82

Query: 59  PSPARSSSGRPFHSATGSPATASTGAS-----GGLYSPPQQKLGSGNLSHSAFGSRQRQV 113
           P PA  S      SA G     +  A       G+  PP+ ++G         G+  R  
Sbjct: 83  PRPASLSPRAALASAPGQKPQPARQAQLPRPVSGVRPPPRGRVGLSQAPGRPLGACAR-- 140

Query: 114 LDRSTLSGSVYFASTSDPPRPGAAPGHILVLSRL 147
                 +  +   + S P  P   P    V S L
Sbjct: 141 ------AKGIRLVNPSPPRPPEPIPASAAVTSGL 168


>gi|239750650 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 414

 Score = 38.9 bits (89), Expect = 0.003
 Identities = 32/108 (29%), Positives = 44/108 (40%), Gaps = 10/108 (9%)

Query: 2   PPPRLAFFLTPEPVTR---ATITLHLSPHSHRTHDVRGPQHAAPPQANEGSLSRFPPPRG 58
           P PR + FL+  P TR   AT + H +P       +R P     P   E  L R  PPR 
Sbjct: 242 PLPRTSSFLSEVPSTRPLCATSSSHSAPLPFFWSPLRNPSPRPAPACGELRLGRLSPPRA 301

Query: 59  PSPARSSSG-----RPFHSATGSPATASTGASG--GLYSPPQQKLGSG 99
            +   SS G         +    PA  +  A+G  G  +P + + G G
Sbjct: 302 DTGGSSSGGCSGPDSKHRTLPAPPAPTAWPAAGAPGAPNPAESRRGPG 349



 Score = 31.6 bits (70), Expect = 0.50
 Identities = 38/154 (24%), Positives = 54/154 (35%), Gaps = 19/154 (12%)

Query: 4   PRLAFFLTPEPVTRATITLHLSPHSHRTHDV-----RGPQHAAPPQANEGSLSRFPPPRG 58
           PRLA  L+ +P  R + +    P   R  D+     RGP H+  P     +  R    R 
Sbjct: 24  PRLAEALS-QPTLRHSASALRPPRLSRGKDLKPRCGRGPAHSPDPGEGCEAWRRLSADRW 82

Query: 59  PSPARSSSGRPFHSATGSPATASTGAS-----GGLYSPPQQKLGSGNLSHSAFGSRQRQV 113
           P PA  S      SA G     +  A       G+  PP+ ++G         G+  R  
Sbjct: 83  PRPASLSPRAALASAPGQKPQPARQAQLPRPVSGVRPPPRGRVGLSQAPGRPLGACAR-- 140

Query: 114 LDRSTLSGSVYFASTSDPPRPGAAPGHILVLSRL 147
                 +  +   + S P  P   P    V S L
Sbjct: 141 ------AKGIRLVNPSPPRPPEPIPASAAVTSGL 168


>gi|89037350 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 414

 Score = 38.9 bits (89), Expect = 0.003
 Identities = 32/108 (29%), Positives = 44/108 (40%), Gaps = 10/108 (9%)

Query: 2   PPPRLAFFLTPEPVTR---ATITLHLSPHSHRTHDVRGPQHAAPPQANEGSLSRFPPPRG 58
           P PR + FL+  P TR   AT + H +P       +R P     P   E  L R  PPR 
Sbjct: 242 PLPRTSSFLSEVPSTRPLCATSSSHSAPLPFFWSPLRNPSPRPAPACGELRLGRLSPPRA 301

Query: 59  PSPARSSSG-----RPFHSATGSPATASTGASG--GLYSPPQQKLGSG 99
            +   SS G         +    PA  +  A+G  G  +P + + G G
Sbjct: 302 DTGGSSSGGCSGPDSKHRTLPAPPAPTAWPAAGAPGAPNPAESRRGPG 349



 Score = 31.6 bits (70), Expect = 0.50
 Identities = 38/154 (24%), Positives = 54/154 (35%), Gaps = 19/154 (12%)

Query: 4   PRLAFFLTPEPVTRATITLHLSPHSHRTHDV-----RGPQHAAPPQANEGSLSRFPPPRG 58
           PRLA  L+ +P  R + +    P   R  D+     RGP H+  P     +  R    R 
Sbjct: 24  PRLAEALS-QPTLRHSASALRPPRLSRGKDLKPRCGRGPAHSPDPGEGCEAWRRLSADRW 82

Query: 59  PSPARSSSGRPFHSATGSPATASTGAS-----GGLYSPPQQKLGSGNLSHSAFGSRQRQV 113
           P PA  S      SA G     +  A       G+  PP+ ++G         G+  R  
Sbjct: 83  PRPASLSPRAALASAPGQKPQPARQAQLPRPVSGVRPPPRGRVGLSQAPGRPLGACAR-- 140

Query: 114 LDRSTLSGSVYFASTSDPPRPGAAPGHILVLSRL 147
                 +  +   + S P  P   P    V S L
Sbjct: 141 ------AKGIRLVNPSPPRPPEPIPASAAVTSGL 168


>gi|91208420 bassoon protein [Homo sapiens]
          Length = 3926

 Score = 38.9 bits (89), Expect = 0.003
 Identities = 37/124 (29%), Positives = 50/124 (40%), Gaps = 17/124 (13%)

Query: 12  PEPVTRATITLHLSPHSHRTHDVRGP-QHAAPPQANEGSLSRFPPPRGPSPARSSSGRPF 70
           P+P +R   T        R   V GP Q AAPP+    S      P+ P P + S+  P 
Sbjct: 272 PQPGSRQAETA-------RATSVPGPAQAAAPPEVGRVS------PQPPQPTKPSTAEPR 318

Query: 71  HSATGSPATASTGASGGLYSPPQQKLGSGNLSHSAFGSRQRQVLDRSTLSGSVYFASTSD 130
             A  +PA ++T    GL +  Q + G   L+   FG     +   STL      A T  
Sbjct: 319 PPAGEAPAKSATAVPAGLGATEQTQEG---LTGKLFGLGASLLTQASTLMSVQPEADTQG 375

Query: 131 PPRP 134
            P P
Sbjct: 376 QPAP 379



 Score = 33.9 bits (76), Expect = 0.10
 Identities = 29/89 (32%), Positives = 35/89 (39%), Gaps = 6/89 (6%)

Query: 14   PVTRATITLHLSPHSHRTHDVRGPQHAAPPQANEGSLSRFPPPRGPSPARSSSGRPFHSA 73
            PV+ +T T   S       DVR  QH A  +  +  L     P  PS A    G PF   
Sbjct: 1320 PVSFSTPTSSDSSGGRVIPDVRVTQHFA--KETQDPLKLHSSPASPSSASKEIGMPFSQG 1377

Query: 74   TGSPATASTG-ASGGL---YSPPQQKLGS 98
             G+PAT +      GL   Y  P    GS
Sbjct: 1378 PGTPATTAVAPCPAGLPRGYMTPASPAGS 1406



 Score = 27.7 bits (60), Expect = 7.2
 Identities = 20/64 (31%), Positives = 25/64 (39%), Gaps = 14/64 (21%)

Query: 36   GPQHAAPPQA-------------NEGSLSRFPPPRGPSPARSSSGRPFHSATGSPATAST 82
            GPQ A PP+A              +G   +  P  GP PA   +G       G+PA    
Sbjct: 3830 GPQPAGPPRAEQTNGSKGTAKAPQQGRAPQAQPAPGPGPAGVKAGARPGGTPGAPA-GQP 3888

Query: 83   GASG 86
            GA G
Sbjct: 3889 GADG 3892


>gi|153792074 proline rich 12 [Homo sapiens]
          Length = 2036

 Score = 38.5 bits (88), Expect = 0.004
 Identities = 32/95 (33%), Positives = 39/95 (41%), Gaps = 2/95 (2%)

Query: 45  ANEGSLSRFPPPRGPS-PARSSSGRPFHSATGSPATASTGASGGLYSPPQ-QKLGSGNLS 102
           A  G  +R PPPR  + P   S G P  +     A+ + GA G  YSP Q Q L      
Sbjct: 398 AAAGGATRPPPPRSTATPKCQSLGGPAAAYATGKASGAGGAGGQAYSPGQPQGLLGPQAY 457

Query: 103 HSAFGSRQRQVLDRSTLSGSVYFASTSDPPRPGAA 137
              FG  Q Q L ++           S PP PG A
Sbjct: 458 GQGFGGGQAQDLSKAPSYSGGPPQPPSGPPPPGLA 492


>gi|4507961 zinc finger protein 36, C3H type, homolog [Homo sapiens]
          Length = 326

 Score = 37.7 bits (86), Expect = 0.007
 Identities = 44/155 (28%), Positives = 61/155 (39%), Gaps = 32/155 (20%)

Query: 14  PVTRATITLHLSPHSHRTHDVRGPQHAAPPQANEGSLS--RFPPPRG-----PSPARSSS 66
           PV R +I+    P   RT     P   A P  +  S S    PPP G     PS   ++ 
Sbjct: 179 PVLRQSISFSGLPSGRRTSPP--PPGLAGPSLSSSSFSPSSSPPPPGDLPLSPSAFSAAP 236

Query: 67  GRPFHSATGSPATAST----------GASGGLYSPPQ-QKLGSGNLSHSAFGSRQRQVLD 115
           G P      +P    +          G  GGL   P  Q LGS    +++ GS       
Sbjct: 237 GTPLARRDPTPVCCPSCRRATPISVWGPLGGLVRTPSVQSLGSDPDEYASSGS------- 289

Query: 116 RSTLSGS---VYFASTSDPPRPGAAPGHILVLSRL 147
             +L GS   V+ A    PP+P AAP  + + +R+
Sbjct: 290 --SLGGSDSPVFEAGVFAPPQPVAAPRRLPIFNRI 322


>gi|24308326 BR serine/threonine kinase 1 [Homo sapiens]
          Length = 778

 Score = 37.4 bits (85), Expect = 0.009
 Identities = 39/125 (31%), Positives = 51/125 (40%), Gaps = 8/125 (6%)

Query: 3   PPRLAFFLTPEPVTRATITLHLSPHSH-RTHDVRGPQHA-APPQANEGSLSRFPPPRGPS 60
           P    F  +PEP          SP S  +T   RGP+   A  Q    S    P P  P 
Sbjct: 448 PRSPVFSFSPEPGAGDEARGGGSPTSKTQTLPSRGPRGGGAGEQPPPPSARSTPLPGPPG 507

Query: 61  PARSSSGRPFHSATGSPATASTGASGGLYSPPQQKLGSGNLSHSAFGSRQRQVLDRSTLS 120
             RSS G P HS   +P  + TG  G   +PP      G +  +A+ SR   +  R++  
Sbjct: 508 SPRSSGGTPLHSPLHTPRASPTGTPG--TTPPPSP--GGGVGGAAWRSRLNSI--RNSFL 561

Query: 121 GSVYF 125
           GS  F
Sbjct: 562 GSPRF 566



 Score = 35.8 bits (81), Expect = 0.026
 Identities = 37/151 (24%), Positives = 54/151 (35%), Gaps = 16/151 (10%)

Query: 11  TPEPVTRATITLHLSPHSHRTHDVRGPQ---HAAPPQANEGSLSRFPPPRGPSPARSSSG 67
           +P P  RA   L ++ HS R+  V G      ++P  +    +  F P  G        G
Sbjct: 413 SPVPTRRA---LEMAQHSQRSRSVSGASTGLSSSPLSSPRSPVFSFSPEPGAGDEARGGG 469

Query: 68  RPFHSATGSPATASTGASGGLYSPPQQKL-----GSGNLSHSAFGSRQRQVL--DRSTLS 120
            P       P+    G   G   PP         G      S+ G+     L   R++ +
Sbjct: 470 SPTSKTQTLPSRGPRGGGAGEQPPPPSARSTPLPGPPGSPRSSGGTPLHSPLHTPRASPT 529

Query: 121 GSVYFASTSDPPRPGAAPGHILVLSRLQPLR 151
           G+     T+ PP PG   G     SRL  +R
Sbjct: 530 GT---PGTTPPPSPGGGVGGAAWRSRLNSIR 557


>gi|150170729 microtubule associated serine/threonine kinase 3 [Homo
           sapiens]
          Length = 1309

 Score = 37.0 bits (84), Expect = 0.012
 Identities = 35/115 (30%), Positives = 50/115 (43%), Gaps = 16/115 (13%)

Query: 3   PPRLAFFLTPEPVTRATITLHLSPHSHRTHDVRGPQHAAPPQANEGSLSRFPPPRGPSPA 62
           PP  A  + P+P + +  T  LS    R++ + G +H+ P   + G   R   PR P+P 
Sbjct: 817 PPPAATPVMPKPSSLSADTAALSHARLRSNSI-GARHSTPRPLDAGRGRRLGGPRDPAPE 875

Query: 63  RS-----------SSGRPFHSATGSP----ATASTGASGGLYSPPQQKLGSGNLS 102
           +S           S GR   SA+ S      TA  G+ G L SP   +  S N S
Sbjct: 876 KSRASSSGGSGGGSGGRVPKSASVSALSLIITADDGSGGPLMSPLSPRSLSSNPS 930


>gi|120587025 SH3 and multiple ankyrin repeat domains 1 [Homo
           sapiens]
          Length = 2161

 Score = 37.0 bits (84), Expect = 0.012
 Identities = 25/76 (32%), Positives = 34/76 (44%), Gaps = 18/76 (23%)

Query: 31  THDVRGPQHAAPPQANEGSLSRFPPPRGPSPARSSSGR--------PFHSATGSPATAST 82
           + D+  P   +PP+          PP    P  SSSGR        PF+  +G P  AS+
Sbjct: 917 SEDIPPPPTTSPPE----------PPYSTPPVPSSSGRLTPSPRGGPFNPGSGGPLPASS 966

Query: 83  GASGGLYSPPQQKLGS 98
            AS    SPP  ++GS
Sbjct: 967 PASFDGPSPPDTRVGS 982



 Score = 30.8 bits (68), Expect = 0.85
 Identities = 38/149 (25%), Positives = 52/149 (34%), Gaps = 20/149 (13%)

Query: 1    MPPPRLAFFLTPEPVTRATITLHLSPHSHRTHDVR---GPQHAAPPQANEGSLSRFPPPR 57
            +PPP +A        T +++T + S  +  T       G  H   P A        P P 
Sbjct: 1605 VPPPAVAAAPPTLDSTASSLTSYDSEVATLTQGASAAPGDPHPPGPPAPAAPAPAAPQP- 1663

Query: 58   GPSP------------ARSSSGRPFHSATGSPATASTGASGGLYSPPQQKLGSGNLSHSA 105
            GP P            +RSSS  P  + + +   +S  A GG  +      G+G  S   
Sbjct: 1664 GPDPPPGTDSGIEEVDSRSSSDHPLETISSASTLSSLSAEGGGSAGGGGGAGAGVASGPE 1723

Query: 106  FGSRQRQVLDRSTLSGSVYFASTSDPPRP 134
                    LD     GS    ST  PP P
Sbjct: 1724 LLDTYVAYLDGQAFGGS----STPGPPYP 1748



 Score = 29.6 bits (65), Expect = 1.9
 Identities = 29/98 (29%), Positives = 41/98 (41%), Gaps = 14/98 (14%)

Query: 28  SHRTHDV----RGPQHAAPPQANEGSLSRFPPPRGPSPARSSSGRPFHSATGSPATASTG 83
           +HR  DV      P++AA  +   G+    PP    + + +S   P      +P  AS+G
Sbjct: 401 NHREQDVVPFQESPKYAARRRGPPGTGLTVPPALLRANSDTSMALPDWMVFSAPGAASSG 460

Query: 84  ASG--------GLYSPPQQKLGSGNL--SHSAFGSRQR 111
           A G           S P  KL SG L  + S  G+R R
Sbjct: 461 APGPTSGSQGQSQPSAPTTKLSSGTLRSASSPRGARAR 498


>gi|28559039 mediator complex subunit 1 [Homo sapiens]
          Length = 1581

 Score = 36.6 bits (83), Expect = 0.015
 Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 6/54 (11%)

Query: 45   ANEGSLSRFPPPR------GPSPARSSSGRPFHSATGSPATASTGASGGLYSPP 92
            +N+G     PP R      G SP+ SSS RPF   T +  + S G++G   +PP
Sbjct: 1000 SNDGKSKDKPPKRKKADTEGKSPSHSSSNRPFTPPTSTGGSKSPGSAGRSQTPP 1053



 Score = 32.3 bits (72), Expect = 0.29
 Identities = 28/94 (29%), Positives = 40/94 (42%), Gaps = 4/94 (4%)

Query: 37   PQHAAPPQANEGSLSRFPPPRGPSPARSSSGRPFHSATGSPATASTGASGGLYSPPQQKL 96
            P H+ PP  ++   S   P  G +P  S +  P  S +G    + T +S G+ S     L
Sbjct: 1193 PSHSRPPGGSDKLASPMKPVPG-TPPSSKAKSPISSGSGGSHMSGTSSSSGMKS--SSGL 1249

Query: 97   G-SGNLSHSAFGSRQRQVLDRSTLSGSVYFASTS 129
            G SG+LS     S        S+ S S    S+S
Sbjct: 1250 GSSGSLSQKTPPSSNSCTASSSSFSSSGSSMSSS 1283


>gi|41281612 zinc finger protein 828 [Homo sapiens]
          Length = 812

 Score = 36.2 bits (82), Expect = 0.020
 Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 1/57 (1%)

Query: 36  GPQHAAPPQANEGSLSRFPPPRGPSPARS-SSGRPFHSATGSPATASTGASGGLYSP 91
           GP  AA P++ + + +  P PR PSP+ S    +PF + +  P   +   S G + P
Sbjct: 258 GPSPAASPESRKSARTTSPEPRKPSPSESPEPWKPFPAVSPEPRRPAPAVSPGSWKP 314



 Score = 29.3 bits (64), Expect = 2.5
 Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 3/67 (4%)

Query: 2   PPPRLAFFLTPEPVTRATITLHLSPHSHRTHDVRGPQHAAPPQANEGSLSRFPPPRGPSP 61
           P P+    ++PE V +AT++           +  GP  A+ P++    L+  P P GPSP
Sbjct: 205 PEPQKPAPVSPESV-KATLSNPKPQKQSHFPETLGPPSASSPESPV--LAASPEPWGPSP 261

Query: 62  ARSSSGR 68
           A S   R
Sbjct: 262 AASPESR 268


>gi|20143482 melanoma antigen family E, 1 [Homo sapiens]
          Length = 957

 Score = 35.8 bits (81), Expect = 0.026
 Identities = 28/100 (28%), Positives = 41/100 (41%), Gaps = 5/100 (5%)

Query: 36  GPQHAAPPQANEGSLSRFPPPRGPSPARSSSGRPFHSATGSPATASTGASGGLYSPPQQK 95
           GP  + PP A EG  +  PP R   P+ S    P    + S   A++        P + K
Sbjct: 231 GPSTSVPPTATEGLSTPVPPTRDEGPSTSVPATPGEGPSTSVLPAASDGQSISLVPTRGK 290

Query: 96  LGSGNLSHSAFGSRQRQVLDRSTLSGSVYFASTSDPPRPG 135
             S ++  +A      + L  S    +   +STS PP PG
Sbjct: 291 GSSTSVPPTA-----TEGLSTSVQPTAGEGSSTSVPPTPG 325



 Score = 27.7 bits (60), Expect = 7.2
 Identities = 21/67 (31%), Positives = 28/67 (41%), Gaps = 3/67 (4%)

Query: 36  GPQHAAPPQANEGSLSRFPPPRGPSPARSSSGRPFHS-ATGSPATASTGASGGLYSPPQQ 94
           G   + PP A E   +  PP  G  P+ S    P    +T  P TAS G+   +  PP  
Sbjct: 327 GLSTSVPPTATEELSTSVPPTPGEGPSTSVLPIPGEGLSTSVPPTASDGSDTSV--PPTP 384

Query: 95  KLGSGNL 101
             G+  L
Sbjct: 385 GEGASTL 391


>gi|187937179 apoptosis-associated tyrosine kinase [Homo sapiens]
          Length = 1374

 Score = 35.4 bits (80), Expect = 0.034
 Identities = 37/116 (31%), Positives = 45/116 (38%), Gaps = 5/116 (4%)

Query: 60   SPARSSSGRPFHSATGSPATASTGASGGLYSP--PQQKLGSGNLSHSAFGSRQRQVLDRS 117
            SP R   G PF  A  SP T   G+ G   +P  PQQ  GS N S +  G       D  
Sbjct: 1247 SPTREL-GEPFPGAKESPPTFLRGSPGSPSAPNRPQQADGSPNGSTAEEGGGFAWDDDFP 1305

Query: 118  TLSGSVYFASTSDP--PRPGAAPGHILVLSRLQPLRAEVSRSRLLRVEYSHVKSTK 171
             ++    FA   DP  P P A        SR     A  SR  +  V  S  +S +
Sbjct: 1306 LMTAKAAFAMALDPAAPAPAAPTPTPAPFSRFTVSPAPTSRFSITHVSDSDAESKR 1361


>gi|156151396 heterogeneous nuclear ribonucleoprotein R isoform 3
           [Homo sapiens]
          Length = 535

 Score = 35.4 bits (80), Expect = 0.034
 Identities = 23/66 (34%), Positives = 30/66 (45%), Gaps = 13/66 (19%)

Query: 35  RGPQHAAPPQANEGSLSRFPPPRGPSPARSSSGRPFHSATGSPATASTGASGGLYSPPQQ 94
           RG + A PP    G+    PPPRG         R  +S  G+P     G+ GG   P QQ
Sbjct: 408 RGGRGAPPPPRGRGA----PPPRG---------RAGYSQRGAPLGPPRGSRGGRGGPAQQ 454

Query: 95  KLGSGN 100
           + G G+
Sbjct: 455 QRGRGS 460


>gi|156151394 heterogeneous nuclear ribonucleoprotein R isoform 1
           [Homo sapiens]
          Length = 636

 Score = 35.4 bits (80), Expect = 0.034
 Identities = 23/66 (34%), Positives = 30/66 (45%), Gaps = 13/66 (19%)

Query: 35  RGPQHAAPPQANEGSLSRFPPPRGPSPARSSSGRPFHSATGSPATASTGASGGLYSPPQQ 94
           RG + A PP    G+    PPPRG         R  +S  G+P     G+ GG   P QQ
Sbjct: 509 RGGRGAPPPPRGRGA----PPPRG---------RAGYSQRGAPLGPPRGSRGGRGGPAQQ 555

Query: 95  KLGSGN 100
           + G G+
Sbjct: 556 QRGRGS 561


>gi|156151392 heterogeneous nuclear ribonucleoprotein R isoform 4
           [Homo sapiens]
          Length = 532

 Score = 35.4 bits (80), Expect = 0.034
 Identities = 23/66 (34%), Positives = 30/66 (45%), Gaps = 13/66 (19%)

Query: 35  RGPQHAAPPQANEGSLSRFPPPRGPSPARSSSGRPFHSATGSPATASTGASGGLYSPPQQ 94
           RG + A PP    G+    PPPRG         R  +S  G+P     G+ GG   P QQ
Sbjct: 405 RGGRGAPPPPRGRGA----PPPRG---------RAGYSQRGAPLGPPRGSRGGRGGPAQQ 451

Query: 95  KLGSGN 100
           + G G+
Sbjct: 452 QRGRGS 457


>gi|5031755 heterogeneous nuclear ribonucleoprotein R isoform 2
           [Homo sapiens]
          Length = 633

 Score = 35.4 bits (80), Expect = 0.034
 Identities = 23/66 (34%), Positives = 30/66 (45%), Gaps = 13/66 (19%)

Query: 35  RGPQHAAPPQANEGSLSRFPPPRGPSPARSSSGRPFHSATGSPATASTGASGGLYSPPQQ 94
           RG + A PP    G+    PPPRG         R  +S  G+P     G+ GG   P QQ
Sbjct: 506 RGGRGAPPPPRGRGA----PPPRG---------RAGYSQRGAPLGPPRGSRGGRGGPAQQ 552

Query: 95  KLGSGN 100
           + G G+
Sbjct: 553 QRGRGS 558


>gi|16933557 dachsous 1 precursor [Homo sapiens]
          Length = 3298

 Score = 35.4 bits (80), Expect = 0.034
 Identities = 33/108 (30%), Positives = 43/108 (39%), Gaps = 25/108 (23%)

Query: 2    PPPRL-------AFFLTPEPVTRATITLHLSPHSHRTHDVRGPQHAAPPQANEGSLSR-- 52
            PPP +       A  + P+P   A       P SHR+           P ++EGSLS   
Sbjct: 3201 PPPLITAVAHPGAKSVPPKPANTAAARAIFPPASHRS-----------PISHEGSLSSAA 3249

Query: 53   ----FPPPRGPSPARSSSGRPFHSATGSPATASTGASGGLYSPPQQKL 96
                F P   P  ARS    PF  A G P+ ++  A  GL  P   +L
Sbjct: 3250 MSPSFSPSLSPLAARSPVVSPFGVAQG-PSASALSAESGLEPPDDTEL 3296


>gi|110556644 zinc finger protein, multitype 1 [Homo sapiens]
          Length = 1006

 Score = 35.0 bits (79), Expect = 0.045
 Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 3/70 (4%)

Query: 25  SPHSHRTHDVRGPQHA---APPQANEGSLSRFPPPRGPSPARSSSGRPFHSATGSPATAS 81
           +P S +   V  P+ A    P +    + SR P PR P+PAR  +     +   SP    
Sbjct: 458 APRSIKVEAVEEPEAAPILGPGEPGPQAPSRTPSPRSPAPARVKAELSSPTPGSSPVPGE 517

Query: 82  TGASGGLYSP 91
            G +G L+ P
Sbjct: 518 LGLAGALFLP 527



 Score = 31.2 bits (69), Expect = 0.65
 Identities = 17/55 (30%), Positives = 21/55 (38%), Gaps = 5/55 (9%)

Query: 28 SHRTHDVRGPQHAAPPQANEGSLSRFPPPRGPSPARSSSG-----RPFHSATGSP 77
          SH       P+  +PP A+  S    PPP  P   +   G     RP     GSP
Sbjct: 31 SHMEQKATAPEAPSPPSADVNSPPPLPPPTSPGGPKELEGQEPEPRPTEEEPGSP 85



 Score = 29.6 bits (65), Expect = 1.9
 Identities = 19/52 (36%), Positives = 23/52 (44%), Gaps = 8/52 (15%)

Query: 43  PQANEGSLSRFPPPRGPSPARSSSGRPFHSATGSPATASTGASGGLYSPPQQ 94
           P A  G  +R P  RGPSPA + +         SP   S G   GL   PQ+
Sbjct: 884 PLAGPGVEARTPADRGPSPAPAPA--------ASPQPGSRGPRDGLGPEPQE 927


>gi|156071470 hyperpolarization activated cyclic nucleotide-gated
           potassium channel 2 [Homo sapiens]
          Length = 889

 Score = 34.7 bits (78), Expect = 0.059
 Identities = 44/142 (30%), Positives = 53/142 (37%), Gaps = 29/142 (20%)

Query: 2   PPPRLAFFLTPEPVTRATITLHLSPHSHRTHDVRGPQHAAPPQANEGSLSRFPPPRGPSP 61
           PPP       P  VT A  TL  +        V  P    P       L R PPP GP+P
Sbjct: 717 PPP-------PPQVTSAIATLQQAAAMSFCPQVARPL-VGPLALGSPRLVRRPPP-GPAP 767

Query: 62  ARSSSGRPFHS----ATGSPATASTGASGGLYSPPQQKLGSGNLSHSAFGSRQRQVLDRS 117
           A +S G P  +    A  SP    T   GGL + P        L+  A  +R+       
Sbjct: 768 AAASPGPPPPASPPGAPASPRAPRTSPYGGLPAAP--------LAGPALPARR------- 812

Query: 118 TLSGSVYFASTSDPPRPGAAPG 139
            LS +    S S P  P  APG
Sbjct: 813 -LSRASRPLSASQPSLPHGAPG 833


>gi|4758404 FSHD region gene 1 [Homo sapiens]
          Length = 258

 Score = 34.7 bits (78), Expect = 0.059
 Identities = 16/23 (69%), Positives = 18/23 (78%)

Query: 163 EYSHVKSTKLVFKGTKAKRRDGK 185
           EYS+VKSTKLV KGTK K +  K
Sbjct: 3   EYSYVKSTKLVLKGTKTKSKKKK 25


>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
          Length = 2752

 Score = 34.3 bits (77), Expect = 0.077
 Identities = 47/164 (28%), Positives = 66/164 (40%), Gaps = 8/164 (4%)

Query: 40   AAPPQANEGSLSRFPPPRGPSPARSSSGRPFHSATGSPATASTGASGGLYSPPQQKLGSG 99
            A P ++  GS S+    RGPSP  SSS     S+   P  + T A  G  S P+ K  S 
Sbjct: 1631 ALPRRSRSGSSSK---GRGPSPEGSSSTE---SSPEHPPKSRT-ARRGSRSSPEPKTKSR 1683

Query: 100  NLSHSAFGSRQRQVLDRSTLSGSVYFASTSDPPRPGAAPGHILVLSRLQPLRAEVSRSRL 159
                        ++  ++ LS     AS+S   R    P H    S   P  AE SRS  
Sbjct: 1684 TPPRRRSSRSSPELTRKARLSRRSRSASSSPETRSRTPPRHRRSPSVSSPEPAEKSRSSR 1743

Query: 160  LRVEYSHVKSTKLVFKG-TKAKRRDGKKVSRSELKPLPLRTLSR 202
             R   S  ++     +G + + +  G + SRS  +    RT  R
Sbjct: 1744 RRRSASSPRTKTTSRRGRSPSPKPRGLQRSRSRSRREKTRTTRR 1787



 Score = 31.2 bits (69), Expect = 0.65
 Identities = 54/205 (26%), Positives = 71/205 (34%), Gaps = 20/205 (9%)

Query: 2    PPPRLAFFLTPEPVTRATITLHLSPHSHRTHDVRGPQHAAPPQANEGSLSRFPPPRGPSP 61
            PP R +   +PE   +A     LS  S         +   PP+       R P    P P
Sbjct: 1685 PPRRRSSRSSPELTRKA----RLSRRSRSASSSPETRSRTPPRHR-----RSPSVSSPEP 1735

Query: 62   ARSSSGRPFHSATGSPATASTGASGGLYSPPQQKLGSGNLSHSAFGSRQRQVLDRSTLSG 121
            A  S       +  SP T +T   G   SP  + L           SR R+   R+T   
Sbjct: 1736 AEKSRSSRRRRSASSPRTKTTSRRGRSPSPKPRGLQRSR-------SRSRREKTRTTRRR 1788

Query: 122  SVYFASTSDPPRPGAAPGHILVLSRLQPLRAEVSRSRLLRVEYSHVKSTKLVFKGTKAKR 181
                +S S   R   +     V  R +      SRS   R E S   S +   +G     
Sbjct: 1789 DRSGSSQSTSRRRQRSRSRSRVTRRRRGGSGYHSRSP-ARQESSRTSSRRR--RGRSRTP 1845

Query: 182  RDGKKVSRSELKPLPLRTLSRSLAS 206
               +K SRS   P P +  SRS AS
Sbjct: 1846 PTSRKRSRSRTSPAPWKR-SRSRAS 1869



 Score = 28.5 bits (62), Expect = 4.2
 Identities = 23/54 (42%), Positives = 25/54 (46%), Gaps = 3/54 (5%)

Query: 56   PRGPSPARSSSGRPFHSATGSPATASTGASGGLYSPPQQKLGSGNLS-HSAFGS 108
            PR PS  RSSS        G P T S  +  G  S P  + GSG  S HS  GS
Sbjct: 1411 PRTPSRERSSSASSPEMKDGLPRTPSRRSRSG--SSPGLRDGSGTPSRHSLSGS 1462


>gi|47132519 Ras association and pleckstrin homology domains 1
           isoform 1 [Homo sapiens]
          Length = 1250

 Score = 33.9 bits (76), Expect = 0.10
 Identities = 27/74 (36%), Positives = 30/74 (40%), Gaps = 6/74 (8%)

Query: 37  PQHAAPPQANEGSLSRFPPPRGPSPARSSSGRPFHSAT----GSPA--TASTGASGGLYS 90
           P    PP   E SL   PPP  P PA      P  S T    GSP   T+ T + GG   
Sbjct: 912 PSPDFPPPPPESSLVFPPPPPSPVPAPPPPPPPTASPTPDKSGSPGKKTSKTSSPGGKKP 971

Query: 91  PPQQKLGSGNLSHS 104
           PP  +  S   S S
Sbjct: 972 PPTPQRNSSIKSSS 985


>gi|58530845 zyxin [Homo sapiens]
          Length = 572

 Score = 33.9 bits (76), Expect = 0.10
 Identities = 30/104 (28%), Positives = 41/104 (39%), Gaps = 16/104 (15%)

Query: 8   FFLTPEPVTRATITLHLSPHSHRTHDVRGPQHAAPPQANEGSLSRFPPPRGPSPA-RSSS 66
           F + P+P  +  + LH+             Q    P +   +  R PP   P+PA + S 
Sbjct: 222 FHVQPQPQPKPQVQLHV-------------QSQTQPVSLANTQPRGPPASSPAPAPKFSP 268

Query: 67  GRPFHSATGSPATASTGASGGLYSPPQQKLGSGNLSHSAFGSRQ 110
             P  +   S    S GA GG  S P QKLG      +  GS Q
Sbjct: 269 VTPKFTPVASKF--SPGAPGGSGSQPNQKLGHPEALSAGTGSPQ 310


>gi|4508047 zyxin [Homo sapiens]
          Length = 572

 Score = 33.9 bits (76), Expect = 0.10
 Identities = 30/104 (28%), Positives = 41/104 (39%), Gaps = 16/104 (15%)

Query: 8   FFLTPEPVTRATITLHLSPHSHRTHDVRGPQHAAPPQANEGSLSRFPPPRGPSPA-RSSS 66
           F + P+P  +  + LH+             Q    P +   +  R PP   P+PA + S 
Sbjct: 222 FHVQPQPQPKPQVQLHV-------------QSQTQPVSLANTQPRGPPASSPAPAPKFSP 268

Query: 67  GRPFHSATGSPATASTGASGGLYSPPQQKLGSGNLSHSAFGSRQ 110
             P  +   S    S GA GG  S P QKLG      +  GS Q
Sbjct: 269 VTPKFTPVASKF--SPGAPGGSGSQPNQKLGHPEALSAGTGSPQ 310


>gi|150418009 transforming, acidic coiled-coil containing protein 2
           isoform a [Homo sapiens]
          Length = 2948

 Score = 33.9 bits (76), Expect = 0.10
 Identities = 41/144 (28%), Positives = 60/144 (41%), Gaps = 32/144 (22%)

Query: 27  HSHRTHDVRGPQHAAPP----QANEGSLSRFPPPRGPSPARSSSGRP-------FHSATG 75
           ++ ++H+V+ P    PP    Q++E      PPP   +P+ S+ G P        H  + 
Sbjct: 502 NTEQSHEVQ-PGVPPPPLPKEQSHEVQPGAPPPPLPKAPSESARGPPGPTDGAKVHEDST 560

Query: 76  SPATASTG------ASGGLYSPPQQKLGS--GNL---SHSAFGSRQRQVLDRSTLSGSVY 124
           SPA A  G      + GG    P+   G   GNL      AF S++   + +  LS    
Sbjct: 561 SPAVAKEGSRSPGDSPGGKEEAPEPPDGGDPGNLQGEDSQAFSSKRDPEVGKDELSKPSS 620

Query: 125 FASTSD--------PPRPGAAPGH 140
            A + D        PPR G A GH
Sbjct: 621 DAESRDHPSSHSAQPPRKGGA-GH 643


>gi|239752594 PREDICTED: hypothetical protein, partial [Homo
           sapiens]
          Length = 673

 Score = 33.5 bits (75), Expect = 0.13
 Identities = 32/96 (33%), Positives = 41/96 (42%), Gaps = 7/96 (7%)

Query: 3   PPRLAFFLTPEPVT------RATITLHLSPHSHRTHDVRGPQHAAPPQANE-GSLSRFPP 55
           PPR +   TP   +      RA+ T  LS  S    D        PP+A+  G+  R  P
Sbjct: 389 PPRASPTGTPSTASLTRKPPRASPTGMLSRTSITKMDSTASPTRTPPRASPTGTPPRASP 448

Query: 56  PRGPSPARSSSGRPFHSATGSPATASTGASGGLYSP 91
              PS A  +  +   S TGSP+TAS   S    SP
Sbjct: 449 TGTPSRASPTGTQSTASPTGSPSTASPTGSPSTASP 484



 Score = 32.3 bits (72), Expect = 0.29
 Identities = 44/153 (28%), Positives = 62/153 (40%), Gaps = 20/153 (13%)

Query: 3   PPRLAFFLTPEPVT------RATITLHLSPHSHRTHDVRGPQHAAPPQANEGSLSRFPP- 55
           P R +  +TP   +      RA+ T  LS  S    D        PP+A   S++R P  
Sbjct: 290 PSRASLSMTPSTASLMRMLPRASPTGMLSRTSLTKMDSTASISRTPPRA---SITRTPSR 346

Query: 56  --PRGPSPARSSSGRPFH-SATGSPATASTGASGGLYSP---PQQKLGSGNLSHSAFGSR 109
             P G     S +G P   S TGSP+TAS        SP   P +   +G  S ++   +
Sbjct: 347 ASPTGKPSTASPTGTPSRASPTGSPSTASLTGLSSTASPTGTPPRASPTGTPSTASLTRK 406

Query: 110 QRQVLDRSTLSGS--VYFASTSDPPR--PGAAP 138
             +      LS +      ST+ P R  P A+P
Sbjct: 407 PPRASPTGMLSRTSITKMDSTASPTRTPPRASP 439



 Score = 29.3 bits (64), Expect = 2.5
 Identities = 23/72 (31%), Positives = 30/72 (41%), Gaps = 1/72 (1%)

Query: 15  VTRATITLHLSPHSHRTHDVRGPQHAAPPQANEGSLSRFPPPRGPSPARSSSGRPFH-SA 73
           ++R +IT   S  S      R      PP+A+         P G     S +G P   S 
Sbjct: 416 LSRTSITKMDSTASPTRTPPRASPTGTPPRASPTGTPSRASPTGTQSTASPTGSPSTASP 475

Query: 74  TGSPATASTGAS 85
           TGSP+TAS   S
Sbjct: 476 TGSPSTASPTGS 487


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.314    0.129    0.377 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,191,694
Number of Sequences: 37866
Number of extensions: 577302
Number of successful extensions: 4094
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 377
Number of HSP's that attempted gapping in prelim test: 3497
Number of HSP's gapped (non-prelim): 951
length of query: 206
length of database: 18,247,518
effective HSP length: 97
effective length of query: 109
effective length of database: 14,574,516
effective search space: 1588622244
effective search space used: 1588622244
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.