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Search of human proteins with 239747074
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239747074 PREDICTED: hypothetical protein XP_002343911 [Homo
sapiens]
(402 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239747074 PREDICTED: hypothetical protein XP_002343911 [Homo ... 853 0.0
gi|169216761 PREDICTED: hCG_1742852 [Homo sapiens] 853 0.0
gi|169216486 PREDICTED: hCG_1742852 [Homo sapiens] 848 0.0
gi|169216528 PREDICTED: hCG_1742852 [Homo sapiens] 845 0.0
gi|33188429 tetratricopeptide repeat protein isoform 1 [Homo sap... 110 2e-24
gi|169213867 PREDICTED: hypothetical protein LOC100128682 [Homo ... 103 4e-22
gi|169214305 PREDICTED: hypothetical protein LOC100128682 [Homo ... 103 4e-22
gi|169213267 PREDICTED: hypothetical protein LOC100128682 [Homo ... 103 4e-22
gi|148664240 hypothetical protein LOC146556 isoform 1 [Homo sapi... 103 4e-22
gi|62243734 signal transducing adaptor family member 2 isoform 1... 59 8e-09
gi|121583542 mitogen-activated protein kinase kinase kinase 15 [... 56 5e-08
gi|237858668 hypothetical protein LOC123207 isoform d [Homo sapi... 55 1e-07
gi|228480284 Sep (O-phosphoserine) tRNA:Sec (selenocysteine) tRN... 54 2e-07
gi|217035093 cyclic nucleotide gated channel alpha 1 isoform 1 [... 54 3e-07
gi|54112407 protein kinase CHK2 isoform c [Homo sapiens] 54 3e-07
gi|4506473 v-rel reticuloendotheliosis viral oncogene homolog [H... 54 3e-07
gi|66277202 podocalyxin-like isoform 1 precursor [Homo sapiens] 54 3e-07
gi|169213800 PREDICTED: hypothetical protein [Homo sapiens] 51 2e-06
gi|169214229 PREDICTED: hypothetical protein [Homo sapiens] 51 2e-06
gi|169213573 PREDICTED: hypothetical protein [Homo sapiens] 51 2e-06
gi|28212280 hypothetical protein LOC283579 [Homo sapiens] 51 2e-06
gi|14277126 peptidylprolyl isomerase-like 3 isoform PPIL3a [Homo... 49 1e-05
gi|194473995 zinc finger protein 195 isoform 2 [Homo sapiens] 48 1e-05
gi|194473688 zinc finger protein 195 isoform 1 [Homo sapiens] 48 1e-05
gi|149588643 zinc finger protein 283 [Homo sapiens] 48 1e-05
gi|63999355 chromosome 9 open reading frame 37 [Homo sapiens] 47 2e-05
gi|19743817 integrin beta 1 isoform 1C-1 precursor [Homo sapiens] 45 9e-05
gi|19743821 integrin beta 1 isoform 1C-2 precursor [Homo sapiens] 44 3e-04
gi|239751420 PREDICTED: similar to hCG2039376 [Homo sapiens] 44 3e-04
gi|195963398 suppressor of G2 allele of SKP1 isoform a [Homo sap... 44 3e-04
>gi|239747074 PREDICTED: hypothetical protein XP_002343911 [Homo
sapiens]
Length = 402
Score = 853 bits (2204), Expect = 0.0
Identities = 402/402 (100%), Positives = 402/402 (100%)
Query: 1 MAAARGRMAPGNSGRRARTASHPHSGSHFAATMRTELPLPRTRMGETAASRHLGTPGDTW 60
MAAARGRMAPGNSGRRARTASHPHSGSHFAATMRTELPLPRTRMGETAASRHLGTPGDTW
Sbjct: 1 MAAARGRMAPGNSGRRARTASHPHSGSHFAATMRTELPLPRTRMGETAASRHLGTPGDTW 60
Query: 61 GGVRGEDWETLLHLRDTTWGRGQGEEKASRPRCECGGASAAAFPVVHFVAGPHFVGDSPS 120
GGVRGEDWETLLHLRDTTWGRGQGEEKASRPRCECGGASAAAFPVVHFVAGPHFVGDSPS
Sbjct: 61 GGVRGEDWETLLHLRDTTWGRGQGEEKASRPRCECGGASAAAFPVVHFVAGPHFVGDSPS 120
Query: 121 WRLGRVTPSSGQDAGYGCEFLSGKRPWYRERRKNAETLSGDQPEAEETGPWDQCWMFVFD 180
WRLGRVTPSSGQDAGYGCEFLSGKRPWYRERRKNAETLSGDQPEAEETGPWDQCWMFVFD
Sbjct: 121 WRLGRVTPSSGQDAGYGCEFLSGKRPWYRERRKNAETLSGDQPEAEETGPWDQCWMFVFD 180
Query: 181 FGARPNPERHSRTASDPYSGIPGCEDCEDGVFSPQDPPRRGHGFETPEETWGHVRDEDIS 240
FGARPNPERHSRTASDPYSGIPGCEDCEDGVFSPQDPPRRGHGFETPEETWGHVRDEDIS
Sbjct: 181 FGARPNPERHSRTASDPYSGIPGCEDCEDGVFSPQDPPRRGHGFETPEETWGHVRDEDIS 240
Query: 241 GTPGAASPGHLGLTLVRGKEEEHRDALVRSGTSRHRSLRPMKQAPLDECSVFVLFCFLLR 300
GTPGAASPGHLGLTLVRGKEEEHRDALVRSGTSRHRSLRPMKQAPLDECSVFVLFCFLLR
Sbjct: 241 GTPGAASPGHLGLTLVRGKEEEHRDALVRSGTSRHRSLRPMKQAPLDECSVFVLFCFLLR 300
Query: 301 RSFALAPQAGVRCRDLDSLQPLPPGFKRFSCLSLPSSWGYSHAPSRPANFVVLVETVFLH 360
RSFALAPQAGVRCRDLDSLQPLPPGFKRFSCLSLPSSWGYSHAPSRPANFVVLVETVFLH
Sbjct: 301 RSFALAPQAGVRCRDLDSLQPLPPGFKRFSCLSLPSSWGYSHAPSRPANFVVLVETVFLH 360
Query: 361 VDQAGLELLISGDPPTSASQSAGITGVTHWARPVLCVLRLFC 402
VDQAGLELLISGDPPTSASQSAGITGVTHWARPVLCVLRLFC
Sbjct: 361 VDQAGLELLISGDPPTSASQSAGITGVTHWARPVLCVLRLFC 402
>gi|169216761 PREDICTED: hCG_1742852 [Homo sapiens]
Length = 402
Score = 853 bits (2204), Expect = 0.0
Identities = 402/402 (100%), Positives = 402/402 (100%)
Query: 1 MAAARGRMAPGNSGRRARTASHPHSGSHFAATMRTELPLPRTRMGETAASRHLGTPGDTW 60
MAAARGRMAPGNSGRRARTASHPHSGSHFAATMRTELPLPRTRMGETAASRHLGTPGDTW
Sbjct: 1 MAAARGRMAPGNSGRRARTASHPHSGSHFAATMRTELPLPRTRMGETAASRHLGTPGDTW 60
Query: 61 GGVRGEDWETLLHLRDTTWGRGQGEEKASRPRCECGGASAAAFPVVHFVAGPHFVGDSPS 120
GGVRGEDWETLLHLRDTTWGRGQGEEKASRPRCECGGASAAAFPVVHFVAGPHFVGDSPS
Sbjct: 61 GGVRGEDWETLLHLRDTTWGRGQGEEKASRPRCECGGASAAAFPVVHFVAGPHFVGDSPS 120
Query: 121 WRLGRVTPSSGQDAGYGCEFLSGKRPWYRERRKNAETLSGDQPEAEETGPWDQCWMFVFD 180
WRLGRVTPSSGQDAGYGCEFLSGKRPWYRERRKNAETLSGDQPEAEETGPWDQCWMFVFD
Sbjct: 121 WRLGRVTPSSGQDAGYGCEFLSGKRPWYRERRKNAETLSGDQPEAEETGPWDQCWMFVFD 180
Query: 181 FGARPNPERHSRTASDPYSGIPGCEDCEDGVFSPQDPPRRGHGFETPEETWGHVRDEDIS 240
FGARPNPERHSRTASDPYSGIPGCEDCEDGVFSPQDPPRRGHGFETPEETWGHVRDEDIS
Sbjct: 181 FGARPNPERHSRTASDPYSGIPGCEDCEDGVFSPQDPPRRGHGFETPEETWGHVRDEDIS 240
Query: 241 GTPGAASPGHLGLTLVRGKEEEHRDALVRSGTSRHRSLRPMKQAPLDECSVFVLFCFLLR 300
GTPGAASPGHLGLTLVRGKEEEHRDALVRSGTSRHRSLRPMKQAPLDECSVFVLFCFLLR
Sbjct: 241 GTPGAASPGHLGLTLVRGKEEEHRDALVRSGTSRHRSLRPMKQAPLDECSVFVLFCFLLR 300
Query: 301 RSFALAPQAGVRCRDLDSLQPLPPGFKRFSCLSLPSSWGYSHAPSRPANFVVLVETVFLH 360
RSFALAPQAGVRCRDLDSLQPLPPGFKRFSCLSLPSSWGYSHAPSRPANFVVLVETVFLH
Sbjct: 301 RSFALAPQAGVRCRDLDSLQPLPPGFKRFSCLSLPSSWGYSHAPSRPANFVVLVETVFLH 360
Query: 361 VDQAGLELLISGDPPTSASQSAGITGVTHWARPVLCVLRLFC 402
VDQAGLELLISGDPPTSASQSAGITGVTHWARPVLCVLRLFC
Sbjct: 361 VDQAGLELLISGDPPTSASQSAGITGVTHWARPVLCVLRLFC 402
>gi|169216486 PREDICTED: hCG_1742852 [Homo sapiens]
Length = 402
Score = 848 bits (2190), Expect = 0.0
Identities = 399/402 (99%), Positives = 401/402 (99%)
Query: 1 MAAARGRMAPGNSGRRARTASHPHSGSHFAATMRTELPLPRTRMGETAASRHLGTPGDTW 60
MAAARGRMAPGNSGRRARTASHPHSGSHFAATMRTELPLPRTRMGETAASRHLGTPGDTW
Sbjct: 1 MAAARGRMAPGNSGRRARTASHPHSGSHFAATMRTELPLPRTRMGETAASRHLGTPGDTW 60
Query: 61 GGVRGEDWETLLHLRDTTWGRGQGEEKASRPRCECGGASAAAFPVVHFVAGPHFVGDSPS 120
GGVRGEDWETLLHLRDTTWGRGQGEEKASRPRCECGGASAAAFPVVHFVAGPHFVGDSPS
Sbjct: 61 GGVRGEDWETLLHLRDTTWGRGQGEEKASRPRCECGGASAAAFPVVHFVAGPHFVGDSPS 120
Query: 121 WRLGRVTPSSGQDAGYGCEFLSGKRPWYRERRKNAETLSGDQPEAEETGPWDQCWMFVFD 180
WRLGRVTPS+GQDAGYGCEFLSGKRPWYRERRKNAETLSGDQPEAEETGPWDQCWMFVFD
Sbjct: 121 WRLGRVTPSAGQDAGYGCEFLSGKRPWYRERRKNAETLSGDQPEAEETGPWDQCWMFVFD 180
Query: 181 FGARPNPERHSRTASDPYSGIPGCEDCEDGVFSPQDPPRRGHGFETPEETWGHVRDEDIS 240
FGARPNPERHSRTASDPYSGIPGCEDCEDGVFSPQDPPRRGHGFETPEETWGHVRDEDIS
Sbjct: 181 FGARPNPERHSRTASDPYSGIPGCEDCEDGVFSPQDPPRRGHGFETPEETWGHVRDEDIS 240
Query: 241 GTPGAASPGHLGLTLVRGKEEEHRDALVRSGTSRHRSLRPMKQAPLDECSVFVLFCFLLR 300
GTPGAASPGHLGLTLVRGKEEEHRDALVRSGTSRHRSLRPMKQAPLDECSVFVLFCFLLR
Sbjct: 241 GTPGAASPGHLGLTLVRGKEEEHRDALVRSGTSRHRSLRPMKQAPLDECSVFVLFCFLLR 300
Query: 301 RSFALAPQAGVRCRDLDSLQPLPPGFKRFSCLSLPSSWGYSHAPSRPANFVVLVETVFLH 360
RSFALAPQAGVRCRDLDSLQPLPPGFKRFSCLSLPSSW YSHAPSRPANFVVLVETVFLH
Sbjct: 301 RSFALAPQAGVRCRDLDSLQPLPPGFKRFSCLSLPSSWDYSHAPSRPANFVVLVETVFLH 360
Query: 361 VDQAGLELLISGDPPTSASQSAGITGVTHWARPVLCVLRLFC 402
VDQAGLELLISGDPPTSASQSAGITGV+HWARPVLCVLRLFC
Sbjct: 361 VDQAGLELLISGDPPTSASQSAGITGVSHWARPVLCVLRLFC 402
>gi|169216528 PREDICTED: hCG_1742852 [Homo sapiens]
Length = 402
Score = 845 bits (2182), Expect = 0.0
Identities = 397/402 (98%), Positives = 400/402 (99%)
Query: 1 MAAARGRMAPGNSGRRARTASHPHSGSHFAATMRTELPLPRTRMGETAASRHLGTPGDTW 60
MAAARGRMAPGNSGRRARTASHPHSGSHFAATMRTELPLPRTRMGETAASRHLGTPGDTW
Sbjct: 1 MAAARGRMAPGNSGRRARTASHPHSGSHFAATMRTELPLPRTRMGETAASRHLGTPGDTW 60
Query: 61 GGVRGEDWETLLHLRDTTWGRGQGEEKASRPRCECGGASAAAFPVVHFVAGPHFVGDSPS 120
GGVRGEDWETLLHLRDTTWGRGQGEEKASRPRCECGGASAAAFPVVHFVAGPHFVGDSPS
Sbjct: 61 GGVRGEDWETLLHLRDTTWGRGQGEEKASRPRCECGGASAAAFPVVHFVAGPHFVGDSPS 120
Query: 121 WRLGRVTPSSGQDAGYGCEFLSGKRPWYRERRKNAETLSGDQPEAEETGPWDQCWMFVFD 180
WRLGRVTPS+GQDAGYGCEFLSGKRPWYRERRKNAETLSGDQPEAEETGPWDQCWMFVFD
Sbjct: 121 WRLGRVTPSAGQDAGYGCEFLSGKRPWYRERRKNAETLSGDQPEAEETGPWDQCWMFVFD 180
Query: 181 FGARPNPERHSRTASDPYSGIPGCEDCEDGVFSPQDPPRRGHGFETPEETWGHVRDEDIS 240
FGARPNPERHSRTASDPYSGIPGCEDCEDGVFSPQDPPRRGHGFETPE+TWGHVRDEDIS
Sbjct: 181 FGARPNPERHSRTASDPYSGIPGCEDCEDGVFSPQDPPRRGHGFETPEDTWGHVRDEDIS 240
Query: 241 GTPGAASPGHLGLTLVRGKEEEHRDALVRSGTSRHRSLRPMKQAPLDECSVFVLFCFLLR 300
GTPGAASPGHLGLTLVRGKEEEHRDALVRSGTSRH SLRPMKQAPLDECSVFVLFCFLLR
Sbjct: 241 GTPGAASPGHLGLTLVRGKEEEHRDALVRSGTSRHHSLRPMKQAPLDECSVFVLFCFLLR 300
Query: 301 RSFALAPQAGVRCRDLDSLQPLPPGFKRFSCLSLPSSWGYSHAPSRPANFVVLVETVFLH 360
RSFALAPQAGVRCRDLDSLQPLPPGFKRFSCLSLPSSW YSHAPSRPANFVVLVETVFLH
Sbjct: 301 RSFALAPQAGVRCRDLDSLQPLPPGFKRFSCLSLPSSWDYSHAPSRPANFVVLVETVFLH 360
Query: 361 VDQAGLELLISGDPPTSASQSAGITGVTHWARPVLCVLRLFC 402
VDQAGLELLISGDPPTSASQSAGITGV+HWARPVLCVLRLFC
Sbjct: 361 VDQAGLELLISGDPPTSASQSAGITGVSHWARPVLCVLRLFC 402
>gi|33188429 tetratricopeptide repeat protein isoform 1 [Homo sapiens]
Length = 1079
Score = 110 bits (275), Expect = 2e-24
Identities = 59/91 (64%), Positives = 66/91 (72%)
Query: 302 SFALAPQAGVRCRDLDSLQPLPPGFKRFSCLSLPSSWGYSHAPSRPANFVVLVETVFLHV 361
SF + +AG++ DL SLQP PPGFKRFS LSLP+SW Y H PS P NF + VET F HV
Sbjct: 989 SFQESLRAGMQWCDLSSLQPPPPGFKRFSHLSLPNSWNYRHLPSCPTNFCIFVETGFHHV 1048
Query: 362 DQAGLELLISGDPPTSASQSAGITGVTHWAR 392
QA LELL SG SASQSAGITGV+H AR
Sbjct: 1049 GQACLELLTSGGLLASASQSAGITGVSHHAR 1079
>gi|169213867 PREDICTED: hypothetical protein LOC100128682 [Homo
sapiens]
Length = 299
Score = 103 bits (256), Expect = 4e-22
Identities = 55/104 (52%), Positives = 64/104 (61%), Gaps = 4/104 (3%)
Query: 291 VFVLFCFLLRRSFALAPQAGVR-CRDLDSLQPLPPGFKRFSCLSLPSSWGYSHAPSRPAN 349
VF+LFCF+ QAGV+ C DL SLQP PPGF SCLSLP SW Y H P PAN
Sbjct: 117 VFILFCFVFEMESCSVTQAGVQWCDDLGSLQPPPPGF---SCLSLPGSWDYRHPPPHPAN 173
Query: 350 FVVLVETVFLHVDQAGLELLISGDPPTSASQSAGITGVTHWARP 393
F + QAG++LL + D PT ASQS ITGV+H A+P
Sbjct: 174 FCIFSRDEVSTPTQAGVKLLTASDLPTLASQSVAITGVSHHAQP 217
>gi|169214305 PREDICTED: hypothetical protein LOC100128682 [Homo
sapiens]
Length = 299
Score = 103 bits (256), Expect = 4e-22
Identities = 55/104 (52%), Positives = 64/104 (61%), Gaps = 4/104 (3%)
Query: 291 VFVLFCFLLRRSFALAPQAGVR-CRDLDSLQPLPPGFKRFSCLSLPSSWGYSHAPSRPAN 349
VF+LFCF+ QAGV+ C DL SLQP PPGF SCLSLP SW Y H P PAN
Sbjct: 117 VFILFCFVFEMESCSVTQAGVQWCDDLGSLQPPPPGF---SCLSLPGSWDYRHPPPHPAN 173
Query: 350 FVVLVETVFLHVDQAGLELLISGDPPTSASQSAGITGVTHWARP 393
F + QAG++LL + D PT ASQS ITGV+H A+P
Sbjct: 174 FCIFSRDEVSTPTQAGVKLLTASDLPTLASQSVAITGVSHHAQP 217
>gi|169213267 PREDICTED: hypothetical protein LOC100128682 [Homo
sapiens]
Length = 299
Score = 103 bits (256), Expect = 4e-22
Identities = 55/104 (52%), Positives = 64/104 (61%), Gaps = 4/104 (3%)
Query: 291 VFVLFCFLLRRSFALAPQAGVR-CRDLDSLQPLPPGFKRFSCLSLPSSWGYSHAPSRPAN 349
VF+LFCF+ QAGV+ C DL SLQP PPGF SCLSLP SW Y H P PAN
Sbjct: 117 VFILFCFVFEMESCSVTQAGVQWCDDLGSLQPPPPGF---SCLSLPGSWDYRHPPPHPAN 173
Query: 350 FVVLVETVFLHVDQAGLELLISGDPPTSASQSAGITGVTHWARP 393
F + QAG++LL + D PT ASQS ITGV+H A+P
Sbjct: 174 FCIFSRDEVSTPTQAGVKLLTASDLPTLASQSVAITGVSHHAQP 217
>gi|148664240 hypothetical protein LOC146556 isoform 1 [Homo
sapiens]
Length = 440
Score = 103 bits (256), Expect = 4e-22
Identities = 54/78 (69%), Positives = 59/78 (75%), Gaps = 1/78 (1%)
Query: 308 QAGVRCRDLDSLQPLPPGFKRFSCLSLPSSWGYSHAPSRPANF-VVLVETVFLHVDQAGL 366
QAGV+ R+L SLQPLPPGFK+FSCL LPSSW Y P ANF + LVET F HV AGL
Sbjct: 363 QAGVQWRNLGSLQPLPPGFKQFSCLILPSSWDYRSVPPYLANFYIFLVETGFHHVAHAGL 422
Query: 367 ELLISGDPPTSASQSAGI 384
ELLIS DPPTS SQS G+
Sbjct: 423 ELLISRDPPTSGSQSVGL 440
>gi|62243734 signal transducing adaptor family member 2 isoform 1
[Homo sapiens]
Length = 449
Score = 58.9 bits (141), Expect = 8e-09
Identities = 32/45 (71%), Positives = 33/45 (73%)
Query: 354 VETVFLHVDQAGLELLISGDPPTSASQSAGITGVTHWARPVLCVL 398
VE F HV QAGLELL S DPPTSASQSAGITGV+H P L L
Sbjct: 358 VEKGFHHVAQAGLELLTSSDPPTSASQSAGITGVSHHTWPHLSSL 402
>gi|121583542 mitogen-activated protein kinase kinase kinase 15
[Homo sapiens]
Length = 788
Score = 56.2 bits (134), Expect = 5e-08
Identities = 26/34 (76%), Positives = 28/34 (82%)
Query: 308 QAGVRCRDLDSLQPLPPGFKRFSCLSLPSSWGYS 341
+AGV+ DL SLQPLPP FKRFSCLSL SSW YS
Sbjct: 25 KAGVQWHDLGSLQPLPPRFKRFSCLSLQSSWDYS 58
>gi|237858668 hypothetical protein LOC123207 isoform d [Homo
sapiens]
Length = 167
Score = 55.1 bits (131), Expect = 1e-07
Identities = 29/50 (58%), Positives = 36/50 (72%)
Query: 351 VVLVETVFLHVDQAGLELLISGDPPTSASQSAGITGVTHWARPVLCVLRL 400
VVL +T ++ QAGLELL S D P SASQSAGITGV+H +P L ++ L
Sbjct: 118 VVLDKTGSCYIAQAGLELLASSDLPASASQSAGITGVSHHTQPALLLISL 167
>gi|228480284 Sep (O-phosphoserine) tRNA:Sec (selenocysteine) tRNA
synthase isoform 3 [Homo sapiens]
Length = 500
Score = 54.3 bits (129), Expect = 2e-07
Identities = 23/37 (62%), Positives = 26/37 (70%)
Query: 311 VRCRDLDSLQPLPPGFKRFSCLSLPSSWGYSHAPSRP 347
++C DL SLQP PPGF F+CLSLPSSW Y P P
Sbjct: 1 MQCDDLGSLQPPPPGFTPFACLSLPSSWDYRRPPPHP 37
>gi|217035093 cyclic nucleotide gated channel alpha 1 isoform 1
[Homo sapiens]
Length = 759
Score = 53.5 bits (127), Expect = 3e-07
Identities = 29/36 (80%), Positives = 29/36 (80%)
Query: 350 FVVLVETVFLHVDQAGLELLISGDPPTSASQSAGIT 385
FV LVE F HV QAGLELLIS D PTSASQSAGIT
Sbjct: 33 FVFLVEMGFHHVGQAGLELLISSDLPTSASQSAGIT 68
>gi|54112407 protein kinase CHK2 isoform c [Homo sapiens]
Length = 586
Score = 53.5 bits (127), Expect = 3e-07
Identities = 29/46 (63%), Positives = 33/46 (71%), Gaps = 1/46 (2%)
Query: 354 VETVFLHVDQAGLELLISGDPPTSASQSAGITGVTHWARPVLCVLR 399
+ET HV Q+ LELL+S DPP SASQSAGI GV H RPV C L+
Sbjct: 106 LETESGHVTQSDLELLLSSDPPASASQSAGIRGVRHHPRPV-CSLK 150
>gi|4506473 v-rel reticuloendotheliosis viral oncogene homolog [Homo
sapiens]
Length = 619
Score = 53.5 bits (127), Expect = 3e-07
Identities = 27/32 (84%), Positives = 27/32 (84%)
Query: 354 VETVFLHVDQAGLELLISGDPPTSASQSAGIT 385
VET F HVDQ GLELL SGDPPT ASQSAGIT
Sbjct: 308 VETGFRHVDQDGLELLTSGDPPTLASQSAGIT 339
>gi|66277202 podocalyxin-like isoform 1 precursor [Homo sapiens]
Length = 558
Score = 53.5 bits (127), Expect = 3e-07
Identities = 28/39 (71%), Positives = 29/39 (74%)
Query: 347 PANFVVLVETVFLHVDQAGLELLISGDPPTSASQSAGIT 385
P L+ETVF HV QAGLELL SGD PT ASQSAGIT
Sbjct: 229 PGMTTTLLETVFHHVSQAGLELLTSGDLPTLASQSAGIT 267
>gi|169213800 PREDICTED: hypothetical protein [Homo sapiens]
Length = 142
Score = 51.2 bits (121), Expect = 2e-06
Identities = 25/33 (75%), Positives = 28/33 (84%)
Query: 360 HVDQAGLELLISGDPPTSASQSAGITGVTHWAR 392
HV QAGLELL S DPPTSASQ+A ITGV+H A+
Sbjct: 5 HVGQAGLELLTSSDPPTSASQNAEITGVSHRAQ 37
>gi|169214229 PREDICTED: hypothetical protein [Homo sapiens]
Length = 142
Score = 51.2 bits (121), Expect = 2e-06
Identities = 25/33 (75%), Positives = 28/33 (84%)
Query: 360 HVDQAGLELLISGDPPTSASQSAGITGVTHWAR 392
HV QAGLELL S DPPTSASQ+A ITGV+H A+
Sbjct: 5 HVGQAGLELLTSSDPPTSASQNAEITGVSHRAQ 37
>gi|169213573 PREDICTED: hypothetical protein [Homo sapiens]
Length = 142
Score = 51.2 bits (121), Expect = 2e-06
Identities = 25/33 (75%), Positives = 28/33 (84%)
Query: 360 HVDQAGLELLISGDPPTSASQSAGITGVTHWAR 392
HV QAGLELL S DPPTSASQ+A ITGV+H A+
Sbjct: 5 HVGQAGLELLTSSDPPTSASQNAEITGVSHRAQ 37
>gi|28212280 hypothetical protein LOC283579 [Homo sapiens]
Length = 122
Score = 50.8 bits (120), Expect = 2e-06
Identities = 25/31 (80%), Positives = 27/31 (87%)
Query: 363 QAGLELLISGDPPTSASQSAGITGVTHWARP 393
QAGLELL S +PP SASQSAGITGV+H ARP
Sbjct: 38 QAGLELLGSSNPPASASQSAGITGVSHCARP 68
>gi|14277126 peptidylprolyl isomerase-like 3 isoform PPIL3a [Homo
sapiens]
Length = 165
Score = 48.5 bits (114), Expect = 1e-05
Identities = 25/40 (62%), Positives = 27/40 (67%), Gaps = 7/40 (17%)
Query: 307 PQAGVRCRDLDSLQPLPPGFKRFSCLSLP-------SSWG 339
PQAGV+ RDL SLQP PPGFK+ CLSLP S WG
Sbjct: 33 PQAGVQWRDLGSLQPPPPGFKQVFCLSLPRTGRGGNSIWG 72
>gi|194473995 zinc finger protein 195 isoform 2 [Homo sapiens]
Length = 606
Score = 48.1 bits (113), Expect = 1e-05
Identities = 28/43 (65%), Positives = 29/43 (67%)
Query: 355 ETVFLHVDQAGLELLISGDPPTSASQSAGITGVTHWARPVLCV 397
E F H QA LELL S D P SASQSAGITGV H A+P L V
Sbjct: 76 EMGFHHATQACLELLGSSDLPASASQSAGITGVNHRAQPGLNV 118
>gi|194473688 zinc finger protein 195 isoform 1 [Homo sapiens]
Length = 629
Score = 48.1 bits (113), Expect = 1e-05
Identities = 28/43 (65%), Positives = 29/43 (67%)
Query: 355 ETVFLHVDQAGLELLISGDPPTSASQSAGITGVTHWARPVLCV 397
E F H QA LELL S D P SASQSAGITGV H A+P L V
Sbjct: 76 EMGFHHATQACLELLGSSDLPASASQSAGITGVNHRAQPGLNV 118
>gi|149588643 zinc finger protein 283 [Homo sapiens]
Length = 679
Score = 48.1 bits (113), Expect = 1e-05
Identities = 24/34 (70%), Positives = 25/34 (73%)
Query: 308 QAGVRCRDLDSLQPLPPGFKRFSCLSLPSSWGYS 341
QAGV+ DL SLQ PPGF FSCLSL SSW YS
Sbjct: 8 QAGVQWCDLGSLQAPPPGFTLFSCLSLLSSWDYS 41
>gi|63999355 chromosome 9 open reading frame 37 [Homo sapiens]
Length = 176
Score = 47.4 bits (111), Expect = 2e-05
Identities = 24/36 (66%), Positives = 27/36 (75%)
Query: 358 FLHVDQAGLELLISGDPPTSASQSAGITGVTHWARP 393
F +V QA LELL S +PP SASQS GITG +H ARP
Sbjct: 3 FHYVAQADLELLTSSNPPASASQSTGITGGSHRARP 38
>gi|19743817 integrin beta 1 isoform 1C-1 precursor [Homo sapiens]
Length = 825
Score = 45.4 bits (106), Expect = 9e-05
Identities = 20/33 (60%), Positives = 25/33 (75%)
Query: 308 QAGVRCRDLDSLQPLPPGFKRFSCLSLPSSWGY 340
Q GV+ D+ SLQPL F++FSCLSLPS+W Y
Sbjct: 783 QPGVQWCDISSLQPLTSRFQQFSCLSLPSTWDY 815
>gi|19743821 integrin beta 1 isoform 1C-2 precursor [Homo sapiens]
Length = 819
Score = 43.9 bits (102), Expect = 3e-04
Identities = 19/31 (61%), Positives = 24/31 (77%)
Query: 310 GVRCRDLDSLQPLPPGFKRFSCLSLPSSWGY 340
GV+ D+ SLQPL F++FSCLSLPS+W Y
Sbjct: 779 GVQWCDISSLQPLTSRFQQFSCLSLPSTWDY 809
>gi|239751420 PREDICTED: similar to hCG2039376 [Homo sapiens]
Length = 858
Score = 43.9 bits (102), Expect = 3e-04
Identities = 32/74 (43%), Positives = 39/74 (52%), Gaps = 10/74 (13%)
Query: 334 LPSSWGYSHAPSRPANFVV----LVETVFLHVDQAGLELLISGDPPTSASQSAGITGVTH 389
+P+ W SR F +V+ V QAGLELL+S P ASQSAGITG++H
Sbjct: 670 IPALWKAEAGRSRGQEFETSLANIVKPQSCCVAQAGLELLVSSSPSALASQSAGITGMSH 729
Query: 390 --WARPVLCVLRLF 401
W L VL LF
Sbjct: 730 CTW----LVVLFLF 739
>gi|195963398 suppressor of G2 allele of SKP1 isoform a [Homo
sapiens]
Length = 365
Score = 43.9 bits (102), Expect = 3e-04
Identities = 22/33 (66%), Positives = 24/33 (72%)
Query: 354 VETVFLHVDQAGLELLISGDPPTSASQSAGITG 386
+ET F V QAGL+LL S DPP SQSAGITG
Sbjct: 110 IETGFHRVGQAGLQLLTSSDPPALDSQSAGITG 142
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.136 0.448
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,849,964
Number of Sequences: 37866
Number of extensions: 1093115
Number of successful extensions: 2811
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 51
Number of HSP's that attempted gapping in prelim test: 2654
Number of HSP's gapped (non-prelim): 171
length of query: 402
length of database: 18,247,518
effective HSP length: 105
effective length of query: 297
effective length of database: 14,271,588
effective search space: 4238661636
effective search space used: 4238661636
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.