Guide to the Human Genome
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Search of human proteins with 239746759

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239746759 PREDICTED: hypothetical protein XP_002343836 [Homo
sapiens]
         (150 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239752239 PREDICTED: hypothetical protein XP_002348169 [Homo ...   323   3e-89
gi|239746759 PREDICTED: hypothetical protein XP_002343836 [Homo ...   323   3e-89
gi|239755701 PREDICTED: hypothetical protein [Homo sapiens]            35   0.031
gi|239750211 PREDICTED: hypothetical protein [Homo sapiens]            35   0.031
gi|239744518 PREDICTED: hypothetical protein isoform 2 [Homo sap...    35   0.031
gi|239758067 PREDICTED: similar to facioscapulohumeral muscular ...    33   0.069
gi|167614500 lymphocyte-activation protein 3 precursor [Homo sap...    33   0.090
gi|194363768 homeobox D9 [Homo sapiens]                                32   0.20 
gi|154146231 DMRT-like family A2 [Homo sapiens]                        32   0.20 
gi|155029552 hypothetical protein LOC388115 [Homo sapiens]             32   0.20 
gi|78499633 phospholipase C, eta 2 [Homo sapiens]                      32   0.26 
gi|19913385 G6B protein isoform G6b-G precursor [Homo sapiens]         32   0.26 
gi|168229174 RNA binding motif protein 27 [Homo sapiens]               32   0.26 
gi|53829370 neuralized homolog 4 isoform 1 [Homo sapiens]              31   0.34 
gi|53829368 neuralized homolog 4 isoform 2 [Homo sapiens]              31   0.34 
gi|239755909 PREDICTED: hypothetical protein [Homo sapiens]            31   0.45 
gi|239750423 PREDICTED: hypothetical protein XP_002347390 [Homo ...    31   0.45 
gi|90403598 mesoderm posterior 2 homolog [Homo sapiens]                31   0.45 
gi|15826852 acyl-Coenzyme A binding domain containing 3 [Homo sa...    31   0.45 
gi|226823326 methenyltetrahydrofolate synthetase domain containi...    30   0.59 
gi|226823324 methenyltetrahydrofolate synthetase domain containi...    30   0.59 
gi|226823322 methenyltetrahydrofolate synthetase domain containi...    30   0.59 
gi|226823319 methenyltetrahydrofolate synthetase domain containi...    30   0.59 
gi|116875838 methenyltetrahydrofolate synthetase domain containi...    30   0.59 
gi|85362735 nuclear receptor subfamily 1, group H, member 2 [Hom...    30   0.59 
gi|239743293 PREDICTED: mucin 12 [Homo sapiens]                        30   0.59 
gi|117414137 retinitis pigmentosa 1-like 1 [Homo sapiens]              30   0.59 
gi|51093859 calcium channel, voltage-dependent, T type, alpha 1I...    30   0.59 
gi|21361077 calcium channel, voltage-dependent, T type, alpha 1I...    30   0.59 
gi|116174748 developing brain homeobox 2 [Homo sapiens]                30   0.59 

>gi|239752239 PREDICTED: hypothetical protein XP_002348169 [Homo
           sapiens]
          Length = 150

 Score =  323 bits (828), Expect = 3e-89
 Identities = 150/150 (100%), Positives = 150/150 (100%)

Query: 1   MFMRWPTRVTPSSTKSSLVSAGRCAPSISWSSKRSRCSPRWMLSSQSPTSNLLQSCSGFC 60
           MFMRWPTRVTPSSTKSSLVSAGRCAPSISWSSKRSRCSPRWMLSSQSPTSNLLQSCSGFC
Sbjct: 1   MFMRWPTRVTPSSTKSSLVSAGRCAPSISWSSKRSRCSPRWMLSSQSPTSNLLQSCSGFC 60

Query: 61  WKGRRGPGAPGPGPDAGEGSGDGEGERLRALTLRTTKRTSLGSCGMERLDDLRMLLRWAT 120
           WKGRRGPGAPGPGPDAGEGSGDGEGERLRALTLRTTKRTSLGSCGMERLDDLRMLLRWAT
Sbjct: 61  WKGRRGPGAPGPGPDAGEGSGDGEGERLRALTLRTTKRTSLGSCGMERLDDLRMLLRWAT 120

Query: 121 SWQGPAGCPGHQLVPPPGNACPCSAAAGGS 150
           SWQGPAGCPGHQLVPPPGNACPCSAAAGGS
Sbjct: 121 SWQGPAGCPGHQLVPPPGNACPCSAAAGGS 150


>gi|239746759 PREDICTED: hypothetical protein XP_002343836 [Homo
           sapiens]
          Length = 150

 Score =  323 bits (828), Expect = 3e-89
 Identities = 150/150 (100%), Positives = 150/150 (100%)

Query: 1   MFMRWPTRVTPSSTKSSLVSAGRCAPSISWSSKRSRCSPRWMLSSQSPTSNLLQSCSGFC 60
           MFMRWPTRVTPSSTKSSLVSAGRCAPSISWSSKRSRCSPRWMLSSQSPTSNLLQSCSGFC
Sbjct: 1   MFMRWPTRVTPSSTKSSLVSAGRCAPSISWSSKRSRCSPRWMLSSQSPTSNLLQSCSGFC 60

Query: 61  WKGRRGPGAPGPGPDAGEGSGDGEGERLRALTLRTTKRTSLGSCGMERLDDLRMLLRWAT 120
           WKGRRGPGAPGPGPDAGEGSGDGEGERLRALTLRTTKRTSLGSCGMERLDDLRMLLRWAT
Sbjct: 61  WKGRRGPGAPGPGPDAGEGSGDGEGERLRALTLRTTKRTSLGSCGMERLDDLRMLLRWAT 120

Query: 121 SWQGPAGCPGHQLVPPPGNACPCSAAAGGS 150
           SWQGPAGCPGHQLVPPPGNACPCSAAAGGS
Sbjct: 121 SWQGPAGCPGHQLVPPPGNACPCSAAAGGS 150


>gi|239755701 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 155

 Score = 34.7 bits (78), Expect = 0.031
 Identities = 28/95 (29%), Positives = 42/95 (44%), Gaps = 3/95 (3%)

Query: 31  SSKRSRCSPRWMLSSQSPTSNLLQSCSGFCWKGRRGPGAPGPGPDAGEGSGDGEGERLRA 90
           SS R   +  +   ++ P + +L S +   + G R P +PGP P A  GSG G G R  A
Sbjct: 53  SSLRDTTTRHFQGRNRYPQTPILDSHN---FPGLRQPHSPGPPPRAPAGSGSGAGRREGA 109

Query: 91  LTLRTTKRTSLGSCGMERLDDLRMLLRWATSWQGP 125
              R+  +   G   +  L  L  +L   +S   P
Sbjct: 110 EFARSRGKEKRGVRALRSLRILPQILPQLSSLAEP 144


>gi|239750211 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 155

 Score = 34.7 bits (78), Expect = 0.031
 Identities = 28/95 (29%), Positives = 42/95 (44%), Gaps = 3/95 (3%)

Query: 31  SSKRSRCSPRWMLSSQSPTSNLLQSCSGFCWKGRRGPGAPGPGPDAGEGSGDGEGERLRA 90
           SS R   +  +   ++ P + +L S +   + G R P +PGP P A  GSG G G R  A
Sbjct: 53  SSLRDTTTRHFQGRNRYPQTPILDSHN---FPGLRQPHSPGPPPRAPAGSGSGAGRREGA 109

Query: 91  LTLRTTKRTSLGSCGMERLDDLRMLLRWATSWQGP 125
              R+  +   G   +  L  L  +L   +S   P
Sbjct: 110 EFARSRGKEKRGVRALRSLRILPQILPQLSSLAEP 144


>gi|239744518 PREDICTED: hypothetical protein isoform 2 [Homo
           sapiens]
          Length = 155

 Score = 34.7 bits (78), Expect = 0.031
 Identities = 28/95 (29%), Positives = 42/95 (44%), Gaps = 3/95 (3%)

Query: 31  SSKRSRCSPRWMLSSQSPTSNLLQSCSGFCWKGRRGPGAPGPGPDAGEGSGDGEGERLRA 90
           SS R   +  +   ++ P + +L S +   + G R P +PGP P A  GSG G G R  A
Sbjct: 53  SSLRDTTTRHFQGRNRYPQTPILDSHN---FPGLRQPHSPGPPPRAPAGSGSGAGRREGA 109

Query: 91  LTLRTTKRTSLGSCGMERLDDLRMLLRWATSWQGP 125
              R+  +   G   +  L  L  +L   +S   P
Sbjct: 110 EFARSRGKEKRGVRALRSLRILPQILPQLSSLAEP 144


>gi|239758067 PREDICTED: similar to facioscapulohumeral muscular
           dystrophy [Homo sapiens]
          Length = 468

 Score = 33.5 bits (75), Expect = 0.069
 Identities = 26/82 (31%), Positives = 35/82 (42%), Gaps = 21/82 (25%)

Query: 65  RGPGAPGPGPDAGEGSGDGEGERLRALTLRTTKRTSLGSCGMERLDDLRMLLRWATSWQG 124
           R PG PGP P+A     D  G+R+    L          C +  L+  + +       +G
Sbjct: 392 RRPGDPGPSPNA-----DSPGKRVGQAHL----------CPVALLERAQAV----PPRKG 432

Query: 125 PAGCPGHQLVPPPGNACPCSAA 146
           PAGC  H   P P   CPC+ A
Sbjct: 433 PAGC--HPAGPGPPGMCPCAEA 452


>gi|167614500 lymphocyte-activation protein 3 precursor [Homo
           sapiens]
          Length = 525

 Score = 33.1 bits (74), Expect = 0.090
 Identities = 18/42 (42%), Positives = 20/42 (47%), Gaps = 6/42 (14%)

Query: 109 LDDLRMLLRWATSWQG------PAGCPGHQLVPPPGNACPCS 144
           L DL +L R   +WQ       PA  PGH L P P  A P S
Sbjct: 50  LQDLSLLRRAGVTWQHQPDSGPPAAAPGHPLAPGPHPAAPSS 91


>gi|194363768 homeobox D9 [Homo sapiens]
          Length = 352

 Score = 32.0 bits (71), Expect = 0.20
 Identities = 26/80 (32%), Positives = 36/80 (45%), Gaps = 10/80 (12%)

Query: 6   PTRVTPSSTKSSLVSAGRCAPSISWSSKRSRCSPRWMLSSQSPTSNLLQSCSGFCWKGRR 65
           P   T +ST SS       + S+S SSKR+ CS   +      +S    SC+ F  + + 
Sbjct: 168 PAPATAASTTSS------SSTSLSSSSKRTECS---VARESQGSSGPEFSCNSFLQE-KA 217

Query: 66  GPGAPGPGPDAGEGSGDGEG 85
                G GP AG G+  G G
Sbjct: 218 AAATGGTGPGAGIGAATGTG 237


>gi|154146231 DMRT-like family A2 [Homo sapiens]
          Length = 542

 Score = 32.0 bits (71), Expect = 0.20
 Identities = 23/83 (27%), Positives = 30/83 (36%), Gaps = 18/83 (21%)

Query: 66  GPGAPGPGPDAGEGSGDGEGERLRALTLRTTKRTSLGSCGMERLDDLRMLLRWATSWQGP 125
           GPG   P    G GS +G+GE      L    + + GSC                   G 
Sbjct: 225 GPGTSSPEVRPGSGSENGDGESFSGSPLARASKEAGGSC------------------PGS 266

Query: 126 AGCPGHQLVPPPGNACPCSAAAG 148
           AG  G      PG+A P  + +G
Sbjct: 267 AGPGGGGEEDSPGSASPLGSESG 289


>gi|155029552 hypothetical protein LOC388115 [Homo sapiens]
          Length = 534

 Score = 32.0 bits (71), Expect = 0.20
 Identities = 22/68 (32%), Positives = 29/68 (42%), Gaps = 10/68 (14%)

Query: 60  CWKGRRGPGAPGPGPDAGEGSGDGEGERLRALTLRTTKRTSLGSCGMERLDDLRMLLRWA 119
           C + +RG G P PG D    SG  +G   R+   R   + S G+ G+ R           
Sbjct: 475 CPEPQRGAGLPEPGEDRSGKSGAQQGLAPRSRPTRGGSQRSRGTAGVRR----------R 524

Query: 120 TSWQGPAG 127
           T   GPAG
Sbjct: 525 TGRPGPAG 532


>gi|78499633 phospholipase C, eta 2 [Homo sapiens]
          Length = 1416

 Score = 31.6 bits (70), Expect = 0.26
 Identities = 28/84 (33%), Positives = 35/84 (41%), Gaps = 21/84 (25%)

Query: 67   PGAPGPGPD--AGEGSGDGEGERLRALTLRTTKRTSLGSCGMERLDDLRMLLRWATSWQG 124
            P  PGP P+  A EG G G     R L   +T+R     C +E            T  + 
Sbjct: 965  PPGPGPAPEAPAQEGPGSGSPRDTRPL---STQRPLPPLCSLE------------TIAEE 1009

Query: 125  PAGCPGHQLVPPPGNACPCSAAAG 148
            PA  PG    PPP  A P S++ G
Sbjct: 1010 PAPGPG----PPPPAAVPTSSSQG 1029


>gi|19913385 G6B protein isoform G6b-G precursor [Homo sapiens]
          Length = 222

 Score = 31.6 bits (70), Expect = 0.26
 Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 2/47 (4%)

Query: 39  PRWMLSSQSPTSNLLQSCSGFCWKGRRGPGAPGPGPDAGEGSGDGEG 85
           PR+ LS   P S+  ++ +    KG R   + GPGP  G+G G G G
Sbjct: 178 PRFALSP--PHSSTCENRAPEASKGGRAQDSRGPGPGTGKGMGMGRG 222


>gi|168229174 RNA binding motif protein 27 [Homo sapiens]
          Length = 1060

 Score = 31.6 bits (70), Expect = 0.26
 Identities = 14/24 (58%), Positives = 15/24 (62%), Gaps = 1/24 (4%)

Query: 66  GPGAPGPGPDAGEGSGDGEGERLR 89
           GPG PGPGP  G G G G G  +R
Sbjct: 340 GPG-PGPGPGPGPGPGPGPGHSMR 362



 Score = 30.0 bits (66), Expect = 0.76
 Identities = 14/23 (60%), Positives = 14/23 (60%), Gaps = 1/23 (4%)

Query: 66  GPGAPGPGPDAGEGSGDGEGERL 88
           GPG PGPGP  G G G G   RL
Sbjct: 342 GPG-PGPGPGPGPGPGPGHSMRL 363



 Score = 28.1 bits (61), Expect = 2.9
 Identities = 11/19 (57%), Positives = 11/19 (57%)

Query: 67  PGAPGPGPDAGEGSGDGEG 85
           P  PGPGP  G G G G G
Sbjct: 334 PPMPGPGPGPGPGPGPGPG 352



 Score = 26.9 bits (58), Expect = 6.5
 Identities = 12/19 (63%), Positives = 12/19 (63%), Gaps = 1/19 (5%)

Query: 67  PGAPGPGPDAGEGSGDGEG 85
           PG PGPGP  G G G G G
Sbjct: 337 PG-PGPGPGPGPGPGPGPG 354


>gi|53829370 neuralized homolog 4 isoform 1 [Homo sapiens]
          Length = 1562

 Score = 31.2 bits (69), Expect = 0.34
 Identities = 19/46 (41%), Positives = 23/46 (50%), Gaps = 3/46 (6%)

Query: 63  GRRGPGAPGPGPDAGEGSGDGEGERLRA---LTLRTTKRTSLGSCG 105
           G  GPG  G G  +G GSG G    L +   L  RT +  SL +CG
Sbjct: 13  GGPGPGPGGGGGPSGSGSGPGSNGGLGSGGELHPRTGRLVSLSACG 58


>gi|53829368 neuralized homolog 4 isoform 2 [Homo sapiens]
          Length = 1560

 Score = 31.2 bits (69), Expect = 0.34
 Identities = 19/46 (41%), Positives = 23/46 (50%), Gaps = 3/46 (6%)

Query: 63  GRRGPGAPGPGPDAGEGSGDGEGERLRA---LTLRTTKRTSLGSCG 105
           G  GPG  G G  +G GSG G    L +   L  RT +  SL +CG
Sbjct: 13  GGPGPGPGGGGGPSGSGSGPGSNGGLGSGGELHPRTGRLVSLSACG 58


>gi|239755909 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 212

 Score = 30.8 bits (68), Expect = 0.45
 Identities = 29/98 (29%), Positives = 37/98 (37%), Gaps = 23/98 (23%)

Query: 60  CWK-----GRRG-----------PGAPGPGPDAGEGSGDGEGERLRALTLRTTKRTSLGS 103
           CWK     GR G           PGA GPGP +G+ S    G   R ++  T+   S   
Sbjct: 92  CWKEQGPGGRGGASSSELRALGRPGAAGPGPGSGDASALAGGP--RPVSRDTSSARSGAC 149

Query: 104 CGMERLDDLRMLLRW-ATSWQGPAGCPGHQLVPPPGNA 140
           CG  R +       W A+S      C     + P G A
Sbjct: 150 CGCSRANS----QYWRASSRAAATACNSQNSLQPRGAA 183


>gi|239750423 PREDICTED: hypothetical protein XP_002347390 [Homo
           sapiens]
          Length = 212

 Score = 30.8 bits (68), Expect = 0.45
 Identities = 29/98 (29%), Positives = 37/98 (37%), Gaps = 23/98 (23%)

Query: 60  CWK-----GRRG-----------PGAPGPGPDAGEGSGDGEGERLRALTLRTTKRTSLGS 103
           CWK     GR G           PGA GPGP +G+ S    G   R ++  T+   S   
Sbjct: 92  CWKEQGPGGRGGASSSELRALGRPGAAGPGPGSGDASALAGGP--RPVSRDTSSARSGAC 149

Query: 104 CGMERLDDLRMLLRW-ATSWQGPAGCPGHQLVPPPGNA 140
           CG  R +       W A+S      C     + P G A
Sbjct: 150 CGCSRANS----QYWRASSRAAATACNSQNSLQPRGAA 183


>gi|90403598 mesoderm posterior 2 homolog [Homo sapiens]
          Length = 397

 Score = 30.8 bits (68), Expect = 0.45
 Identities = 23/76 (30%), Positives = 29/76 (38%), Gaps = 15/76 (19%)

Query: 65  RGPG-----APGPGPDAGEGSGDGEGERLRALTLRTTKRTSLGSCGMERLDDLRMLLRWA 119
           RGP      A G G   G+G G G+G+          +    G  G  R   L   +   
Sbjct: 168 RGPAEAQTQAEGQGQGQGQGQGQGQGQG---------QGQGQGQ-GQGRRPGLVSAVLAE 217

Query: 120 TSWQGPAGCPGHQLVP 135
            SW  P+ CPG Q  P
Sbjct: 218 ASWGSPSACPGAQAAP 233


>gi|15826852 acyl-Coenzyme A binding domain containing 3 [Homo
          sapiens]
          Length = 528

 Score = 30.8 bits (68), Expect = 0.45
 Identities = 14/30 (46%), Positives = 16/30 (53%)

Query: 65 RGPGAPGPGPDAGEGSGDGEGERLRALTLR 94
          RGPGA G  P+ GE +  G  E  R L  R
Sbjct: 49 RGPGASGEQPEPGEAAAGGAAEEARRLEQR 78


>gi|226823326 methenyltetrahydrofolate synthetase domain containing
           isoform 5 [Homo sapiens]
          Length = 363

 Score = 30.4 bits (67), Expect = 0.59
 Identities = 27/73 (36%), Positives = 32/73 (43%), Gaps = 17/73 (23%)

Query: 63  GRRGPGAPGP---GPDAGEGSGDGEGERLRALTLRTTKRTSLGSC-GMERLDDLRMLLRW 118
           GRR P  PGP     +A  GS  GEG  L A          +G+  G  R+ DL+  LR 
Sbjct: 256 GRRPPDTPGPETNSMEAAPGSPPGEGAPLAA-------DVYVGNLPGDARVSDLKRALRE 308

Query: 119 ATS------WQGP 125
             S      WQGP
Sbjct: 309 LGSVPLRLTWQGP 321


>gi|226823324 methenyltetrahydrofolate synthetase domain containing
           isoform 4 [Homo sapiens]
          Length = 382

 Score = 30.4 bits (67), Expect = 0.59
 Identities = 27/73 (36%), Positives = 32/73 (43%), Gaps = 17/73 (23%)

Query: 63  GRRGPGAPGP---GPDAGEGSGDGEGERLRALTLRTTKRTSLGSC-GMERLDDLRMLLRW 118
           GRR P  PGP     +A  GS  GEG  L A          +G+  G  R+ DL+  LR 
Sbjct: 275 GRRPPDTPGPETNSMEAAPGSPPGEGAPLAA-------DVYVGNLPGDARVSDLKRALRE 327

Query: 119 ATS------WQGP 125
             S      WQGP
Sbjct: 328 LGSVPLRLTWQGP 340


>gi|226823322 methenyltetrahydrofolate synthetase domain containing
           isoform 2 [Homo sapiens]
          Length = 383

 Score = 30.4 bits (67), Expect = 0.59
 Identities = 27/73 (36%), Positives = 32/73 (43%), Gaps = 17/73 (23%)

Query: 63  GRRGPGAPGP---GPDAGEGSGDGEGERLRALTLRTTKRTSLGSC-GMERLDDLRMLLRW 118
           GRR P  PGP     +A  GS  GEG  L A          +G+  G  R+ DL+  LR 
Sbjct: 276 GRRPPDTPGPETNSMEAAPGSPPGEGAPLAA-------DVYVGNLPGDARVSDLKRALRE 328

Query: 119 ATS------WQGP 125
             S      WQGP
Sbjct: 329 LGSVPLRLTWQGP 341


>gi|226823319 methenyltetrahydrofolate synthetase domain containing
           isoform 1 [Homo sapiens]
          Length = 383

 Score = 30.4 bits (67), Expect = 0.59
 Identities = 27/73 (36%), Positives = 32/73 (43%), Gaps = 17/73 (23%)

Query: 63  GRRGPGAPGP---GPDAGEGSGDGEGERLRALTLRTTKRTSLGSC-GMERLDDLRMLLRW 118
           GRR P  PGP     +A  GS  GEG  L A          +G+  G  R+ DL+  LR 
Sbjct: 276 GRRPPDTPGPETNSMEAAPGSPPGEGAPLAA-------DVYVGNLPGDARVSDLKRALRE 328

Query: 119 ATS------WQGP 125
             S      WQGP
Sbjct: 329 LGSVPLRLTWQGP 341


>gi|116875838 methenyltetrahydrofolate synthetase domain containing
           isoform 3 [Homo sapiens]
          Length = 382

 Score = 30.4 bits (67), Expect = 0.59
 Identities = 27/73 (36%), Positives = 32/73 (43%), Gaps = 17/73 (23%)

Query: 63  GRRGPGAPGP---GPDAGEGSGDGEGERLRALTLRTTKRTSLGSC-GMERLDDLRMLLRW 118
           GRR P  PGP     +A  GS  GEG  L A          +G+  G  R+ DL+  LR 
Sbjct: 275 GRRPPDTPGPETNSMEAAPGSPPGEGAPLAA-------DVYVGNLPGDARVSDLKRALRE 327

Query: 119 ATS------WQGP 125
             S      WQGP
Sbjct: 328 LGSVPLRLTWQGP 340


>gi|85362735 nuclear receptor subfamily 1, group H, member 2 [Homo
           sapiens]
          Length = 461

 Score = 30.4 bits (67), Expect = 0.59
 Identities = 21/47 (44%), Positives = 25/47 (53%), Gaps = 7/47 (14%)

Query: 45  SQSPTSNLLQSCSGFCWKGRRGPGAPGPGPDAG-EGSGDGEGERLRA 90
           SQSP      S S        GPGA   G +AG +GSG+GEG +L A
Sbjct: 182 SQSPVGPQGSSSSA------SGPGASPGGSEAGSQGSGEGEGVQLTA 222


>gi|239743293 PREDICTED: mucin 12 [Homo sapiens]
          Length = 5478

 Score = 30.4 bits (67), Expect = 0.59
 Identities = 28/108 (25%), Positives = 45/108 (41%), Gaps = 11/108 (10%)

Query: 6    PTRVTPSSTKSSLVSAGRCAPSISWSSKRSRCSPRWMLSSQSPTSNLLQSCSGFCWKGRR 65
            P+R++PSST+++ +      PS+S  S     SPR   ++ SP +      S        
Sbjct: 2971 PSRLSPSSTETTTLPGSPTTPSLSEKSTTFYTSPRSPDATLSPATTTSSGVSEESSTSHS 3030

Query: 66   GPGAPGPG--PDAGEGSG---------DGEGERLRALTLRTTKRTSLG 102
             PG+      PD+   SG           +G     L+  +T  +SLG
Sbjct: 3031 QPGSTHTTAFPDSTTTSGLSQEPTASHSSQGSTEATLSPGSTTASSLG 3078



 Score = 30.4 bits (67), Expect = 0.59
 Identities = 28/108 (25%), Positives = 45/108 (41%), Gaps = 11/108 (10%)

Query: 6    PTRVTPSSTKSSLVSAGRCAPSISWSSKRSRCSPRWMLSSQSPTSNLLQSCSGFCWKGRR 65
            P+R++PSST+++ +      PS+S  S     SPR   ++ SP +      S        
Sbjct: 4054 PSRLSPSSTETTTLPGSPTTPSLSEKSTTFYTSPRSPDATLSPATTTSSGVSEESSTSHS 4113

Query: 66   GPGAPGPG--PDAGEGSG---------DGEGERLRALTLRTTKRTSLG 102
             PG+      PD+   SG           +G     L+  +T  +SLG
Sbjct: 4114 QPGSTHTTAFPDSTTTSGLSQEPTTSHSSQGSTEATLSPGSTTASSLG 4161



 Score = 29.6 bits (65), Expect = 1.00
 Identities = 18/64 (28%), Positives = 30/64 (46%)

Query: 6    PTRVTPSSTKSSLVSAGRCAPSISWSSKRSRCSPRWMLSSQSPTSNLLQSCSGFCWKGRR 65
            P+R++PSST+++ +      PS+S  S     SPR   ++ SP +      S        
Sbjct: 1414 PSRLSPSSTETTTLPGSPTTPSLSEKSTTFYTSPRSPDATLSPATTTSSGVSEESSTSHS 1473

Query: 66   GPGA 69
             PG+
Sbjct: 1474 QPGS 1477



 Score = 29.6 bits (65), Expect = 1.00
 Identities = 18/64 (28%), Positives = 30/64 (46%)

Query: 6    PTRVTPSSTKSSLVSAGRCAPSISWSSKRSRCSPRWMLSSQSPTSNLLQSCSGFCWKGRR 65
            P+R++PSST+++ +      PS+S  S     SPR   ++ SP +      S        
Sbjct: 2497 PSRLSPSSTETTTLPGSPTTPSLSEKSTTFYTSPRSPDATLSPATTTSSGVSEESSTSHS 2556

Query: 66   GPGA 69
             PG+
Sbjct: 2557 QPGS 2560


>gi|117414137 retinitis pigmentosa 1-like 1 [Homo sapiens]
          Length = 2400

 Score = 30.4 bits (67), Expect = 0.59
 Identities = 29/97 (29%), Positives = 39/97 (40%), Gaps = 14/97 (14%)

Query: 25  APSISW-------SSKRSRCSPRWMLSSQSPTSNLLQSCS----GFCWKGRRGPG---AP 70
           +P  SW       +  R R  P+   SS   T +  QS +    G   +G R PG   +P
Sbjct: 842 SPEASWLCGRYCPTPPRGRPCPQRRSSSCGSTGSSHQSTARGPGGSPQEGTRQPGPTPSP 901

Query: 71  GPGPDAGEGSGDGEGERLRALTLRTTKRTSLGSCGME 107
           GP   A   S   +G   R L+   T R+  G  G E
Sbjct: 902 GPNSGASRRSSASQGAGSRGLSEEKTLRSGGGPQGQE 938


>gi|51093859 calcium channel, voltage-dependent, T type, alpha 1I
            subunit isoform b [Homo sapiens]
          Length = 2188

 Score = 30.4 bits (67), Expect = 0.59
 Identities = 23/70 (32%), Positives = 26/70 (37%), Gaps = 8/70 (11%)

Query: 67   PGAPGPGPDAGEGSGDGEGERLRALTLRTTKRTSLGSCGMERLDDLRMLLRWATSWQG-- 124
            PGAPG GP    G GD EG   R       +   L S  +   D L   L    +  G  
Sbjct: 1734 PGAPGRGPGGAGGGGDTEGGLCRRCYSPAQENLWLDSVSLIIKDSLEGELTIIDNLSGSI 1793

Query: 125  ------PAGC 128
                  PAGC
Sbjct: 1794 FHHYSSPAGC 1803



 Score = 28.9 bits (63), Expect = 1.7
 Identities = 26/86 (30%), Positives = 33/86 (38%), Gaps = 14/86 (16%)

Query: 66   GPGAPGPGPDAGEGSGDGEGERLRALTLRTTKRTSLGSCGMERLDDLRMLLRWATSWQGP 125
            GP AP PGP AG             L+    +R SL   G+  L  LR   R  +S    
Sbjct: 2012 GPPAPAPGPRAG-------------LSPAARRRLSLRGRGLFSLRGLRAHQRSHSSGGST 2058

Query: 126  A-GCPGHQLVPPPGNACPCSAAAGGS 150
            + GC  H  + P        A  GG+
Sbjct: 2059 SPGCTHHDSMDPSDEEGRGGAGGGGA 2084


>gi|21361077 calcium channel, voltage-dependent, T type, alpha 1I
            subunit isoform a [Homo sapiens]
          Length = 2223

 Score = 30.4 bits (67), Expect = 0.59
 Identities = 23/70 (32%), Positives = 26/70 (37%), Gaps = 8/70 (11%)

Query: 67   PGAPGPGPDAGEGSGDGEGERLRALTLRTTKRTSLGSCGMERLDDLRMLLRWATSWQG-- 124
            PGAPG GP    G GD EG   R       +   L S  +   D L   L    +  G  
Sbjct: 1769 PGAPGRGPGGAGGGGDTEGGLCRRCYSPAQENLWLDSVSLIIKDSLEGELTIIDNLSGSI 1828

Query: 125  ------PAGC 128
                  PAGC
Sbjct: 1829 FHHYSSPAGC 1838



 Score = 28.9 bits (63), Expect = 1.7
 Identities = 26/86 (30%), Positives = 33/86 (38%), Gaps = 14/86 (16%)

Query: 66   GPGAPGPGPDAGEGSGDGEGERLRALTLRTTKRTSLGSCGMERLDDLRMLLRWATSWQGP 125
            GP AP PGP AG             L+    +R SL   G+  L  LR   R  +S    
Sbjct: 2047 GPPAPAPGPRAG-------------LSPAARRRLSLRGRGLFSLRGLRAHQRSHSSGGST 2093

Query: 126  A-GCPGHQLVPPPGNACPCSAAAGGS 150
            + GC  H  + P        A  GG+
Sbjct: 2094 SPGCTHHDSMDPSDEEGRGGAGGGGA 2119


>gi|116174748 developing brain homeobox 2 [Homo sapiens]
          Length = 339

 Score = 30.4 bits (67), Expect = 0.59
 Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 2/45 (4%)

Query: 14  TKSSLVSAGRCAPSISWSSKRSRCSPRWMLSSQSPTSNLLQSCSG 58
           ++S+L     C PSI W   +   SPRW  +S  P+  L+Q  SG
Sbjct: 266 SRSALGFPSPC-PSI-WDVPQQHSSPRWRENSPEPSERLIQESSG 308


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.316    0.131    0.445 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,453,837
Number of Sequences: 37866
Number of extensions: 448518
Number of successful extensions: 3810
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 119
Number of HSP's that attempted gapping in prelim test: 3461
Number of HSP's gapped (non-prelim): 426
length of query: 150
length of database: 18,247,518
effective HSP length: 93
effective length of query: 57
effective length of database: 14,725,980
effective search space: 839380860
effective search space used: 839380860
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.6 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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