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Search of human proteins with 239746684
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239746684 PREDICTED: hypothetical protein XP_002343812 [Homo
sapiens]
(396 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239746684 PREDICTED: hypothetical protein XP_002343812 [Homo ... 779 0.0
gi|239750574 PREDICTED: hypothetical protein [Homo sapiens] 44 3e-04
gi|169205732 PREDICTED: hypothetical protein [Homo sapiens] 44 3e-04
gi|126352608 elastin isoform e precursor [Homo sapiens] 42 0.001
gi|126352440 elastin isoform a precursor [Homo sapiens] 42 0.001
gi|39930511 collagen and calcium binding EGF domains 1 [Homo sap... 40 0.005
gi|239754887 PREDICTED: hypothetical protein XP_002346152 [Homo ... 39 0.006
gi|239749426 PREDICTED: hypothetical protein XP_002347042 [Homo ... 39 0.006
gi|239743560 PREDICTED: hypothetical protein XP_002342893 [Homo ... 39 0.006
gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens] 39 0.006
gi|47271406 bin3, bicoid-interacting 3 [Homo sapiens] 39 0.006
gi|156151396 heterogeneous nuclear ribonucleoprotein R isoform 3... 39 0.011
gi|156151394 heterogeneous nuclear ribonucleoprotein R isoform 1... 39 0.011
gi|156151392 heterogeneous nuclear ribonucleoprotein R isoform 4... 39 0.011
gi|5031755 heterogeneous nuclear ribonucleoprotein R isoform 2 [... 39 0.011
gi|5174633 receptor for egg jelly-like protein precursor [Homo s... 38 0.018
gi|87196339 collagen, type VI, alpha 1 precursor [Homo sapiens] 37 0.031
gi|145701009 acetylcholinesterase collagen-like tail subunit iso... 37 0.041
gi|18105018 acetylcholinesterase collagen-like tail subunit isof... 37 0.041
gi|18105016 acetylcholinesterase collagen-like tail subunit isof... 37 0.041
gi|150170699 kinesin family member 26A [Homo sapiens] 37 0.041
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 36 0.053
gi|187829730 BCL2 binding component 3 isoform 1 [Homo sapiens] 36 0.053
gi|49574532 glycogen synthase kinase 3 alpha [Homo sapiens] 36 0.053
gi|32964830 collagen, type VIII, alpha 2 [Homo sapiens] 36 0.053
gi|32140760 collagen, type XXVII, alpha 1 [Homo sapiens] 36 0.053
gi|239756833 PREDICTED: hypothetical protein [Homo sapiens] 36 0.069
gi|239751318 PREDICTED: hypothetical protein XP_002347804 [Homo ... 36 0.069
gi|239745817 PREDICTED: hypothetical protein XP_002343597 [Homo ... 36 0.069
gi|116256356 alpha 4 type IV collagen precursor [Homo sapiens] 36 0.069
>gi|239746684 PREDICTED: hypothetical protein XP_002343812 [Homo
sapiens]
Length = 396
Score = 779 bits (2011), Expect = 0.0
Identities = 396/396 (100%), Positives = 396/396 (100%)
Query: 1 MEGALAIVGPDLPGLADAHDGGLGHDNRAVPVPLMALRRGGTAAVEGLLRVLRGRAAFVP 60
MEGALAIVGPDLPGLADAHDGGLGHDNRAVPVPLMALRRGGTAAVEGLLRVLRGRAAFVP
Sbjct: 1 MEGALAIVGPDLPGLADAHDGGLGHDNRAVPVPLMALRRGGTAAVEGLLRVLRGRAAFVP 60
Query: 61 EHAVGGGAWGHAAGLARGEVLLAGGEVLIGAAVRGIAASAILKTPGGVGPAGPGKALLLL 120
EHAVGGGAWGHAAGLARGEVLLAGGEVLIGAAVRGIAASAILKTPGGVGPAGPGKALLLL
Sbjct: 61 EHAVGGGAWGHAAGLARGEVLLAGGEVLIGAAVRGIAASAILKTPGGVGPAGPGKALLLL 120
Query: 121 RGALAAQERALALPFHHAPDVDALVGLVLQGRPRGPATAIGVDQVVLQEAGVQLGVLVVA 180
RGALAAQERALALPFHHAPDVDALVGLVLQGRPRGPATAIGVDQVVLQEAGVQLGVLVVA
Sbjct: 121 RGALAAQERALALPFHHAPDVDALVGLVLQGRPRGPATAIGVDQVVLQEAGVQLGVLVVA 180
Query: 181 VDAAAALRGASPVRGPGCIPHARARAVLGLFALHLHGLAAQGADAVRHLFVVDLHQAALV 240
VDAAAALRGASPVRGPGCIPHARARAVLGLFALHLHGLAAQGADAVRHLFVVDLHQAALV
Sbjct: 181 VDAAAALRGASPVRGPGCIPHARARAVLGLFALHLHGLAAQGADAVRHLFVVDLHQAALV 240
Query: 241 VKLDVHVEGLLGVRPGLAMALADPLEVGPERRHAGGGSPVVPFPRRGCPGPAGGPGPGLT 300
VKLDVHVEGLLGVRPGLAMALADPLEVGPERRHAGGGSPVVPFPRRGCPGPAGGPGPGLT
Sbjct: 241 VKLDVHVEGLLGVRPGLAMALADPLEVGPERRHAGGGSPVVPFPRRGCPGPAGGPGPGLT 300
Query: 301 RRTLAVGPGLGLLGGRRVGSVGGRWLRARRGRSGLGGAVGGLRRAPEAPSLPVIALLFLG 360
RRTLAVGPGLGLLGGRRVGSVGGRWLRARRGRSGLGGAVGGLRRAPEAPSLPVIALLFLG
Sbjct: 301 RRTLAVGPGLGLLGGRRVGSVGGRWLRARRGRSGLGGAVGGLRRAPEAPSLPVIALLFLG 360
Query: 361 QQRLQVDHAEALLVHLLLQAPNGGLAALQLLLDVAH 396
QQRLQVDHAEALLVHLLLQAPNGGLAALQLLLDVAH
Sbjct: 361 QQRLQVDHAEALLVHLLLQAPNGGLAALQLLLDVAH 396
>gi|239750574 PREDICTED: hypothetical protein [Homo sapiens]
Length = 1297
Score = 43.9 bits (102), Expect = 3e-04
Identities = 102/363 (28%), Positives = 135/363 (37%), Gaps = 51/363 (14%)
Query: 37 LRRGG--TAAVEGLLRVL---RGRAAFVPEHAVGG--------GAWGHAAGLARGEVLLA 83
LRRGG T + G++ ++ RGRAA E G G GLA+ +V
Sbjct: 341 LRRGGGHTKSHLGVVTIVPGRRGRAAGGQERGGRGRRRQQGRRGRRQAGPGLAKVDV--- 397
Query: 84 GGEVLIGAAVRGIAASAILKTPGGVGPAGPGKALLLLRGALAAQE--RALALPFHHAPD- 140
+VL GA G+ +L G G G+A R A AQE RA A H
Sbjct: 398 --DVLAGAL--GLRWQWVLVHAGQAGQPLQGQARGPHRPAALAQEALRAAAARPHGRRHY 453
Query: 141 -VDALVGLVLQGRPR--GPATAIGVDQVVLQEA--------------GVQLGVLVVAVDA 183
V L G +G R GP + + ++LQ+A +G LV A
Sbjct: 454 RVRGLRGAGPEGAGRLAGPWRGLRLQTLLLQDAPHGGAHEHVLVAVPATGVGGLVGAGQG 513
Query: 184 AAALRGASPVRGPGCIPHARARAVLGLFALHLHGLAAQGADAVRHLFVVDLHQAALVVKL 243
A A G +P R P + G + G + + L + LH L
Sbjct: 514 AVAAAGNAPERLPAGVQGCGEEVGRGARGDRVAGGHVEVVPVGQQLAICMLH-GQLGTAP 572
Query: 244 DVHVEGLLG-VRPGLAMALADPLEVGPERRHAGGGSPVVPFPRRGCPGPAGGPGPGLTRR 302
HV +LG G A +A P R GG P P R G G GGPG +
Sbjct: 573 HAHVPTVLGGALGGRAGLVAAPARRECPARRRGGCWPRRPRRRHGGGGGGGGPG----LQ 628
Query: 303 TLAVGPGLGLLGGRRVGSVGGRWLRARRGRSGLGGAVGGL-----RRAPEAPSLPVIALL 357
L G G G V + AR GR+G G V + AP L V +L
Sbjct: 629 DLLGGGHAGGAHGHVVVAPAAAAPTAREGRAGRHGHVAVVCPQVAAGAPVGADLDVSVVL 688
Query: 358 FLG 360
++G
Sbjct: 689 WVG 691
Score = 32.3 bits (72), Expect = 0.77
Identities = 50/153 (32%), Positives = 61/153 (39%), Gaps = 24/153 (15%)
Query: 91 AAVRGI-AASAILKTPGGVGPAG----PGKALLLLRGALAAQERALALPFHHAPDVDALV 145
AA +G+ AA PG G PG RG + + A+AL P AL
Sbjct: 910 AAAQGVRAAQGRAHRPGAQGAPSHRHRPGA-----RGRRSRRRAAVALAGGAHPARAAL- 963
Query: 146 GLVLQGRPRGPATAIGVDQV-VLQEAGVQLGVLVVAVDAAAA--LRGASPVRGPGCIPHA 202
GR RG A+G + AG Q+ +VVA A A +RG P R
Sbjct: 964 -----GRRRGGGQAVGARAAHQARLAGGQVDQVVVAARAGDADGVRGRRPRRLA-----L 1013
Query: 203 RARAVLGLFALHLHGLAAQGADAVRHLFVVDLH 235
AR L LHGL D +RH VV LH
Sbjct: 1014 TARPELEELLERLHGLQDGLVDVLRHHRVVRLH 1046
>gi|169205732 PREDICTED: hypothetical protein [Homo sapiens]
Length = 1297
Score = 43.9 bits (102), Expect = 3e-04
Identities = 102/363 (28%), Positives = 135/363 (37%), Gaps = 51/363 (14%)
Query: 37 LRRGG--TAAVEGLLRVL---RGRAAFVPEHAVGG--------GAWGHAAGLARGEVLLA 83
LRRGG T + G++ ++ RGRAA E G G GLA+ +V
Sbjct: 341 LRRGGGHTKSHLGVVTIVPGRRGRAAGGQERGGRGRRRQQGRRGRRQAGPGLAKVDV--- 397
Query: 84 GGEVLIGAAVRGIAASAILKTPGGVGPAGPGKALLLLRGALAAQE--RALALPFHHAPD- 140
+VL GA G+ +L G G G+A R A AQE RA A H
Sbjct: 398 --DVLAGAL--GLRWQWVLVHAGQAGQPLQGQARGPHRPAALAQEALRAAAARPHGRRHY 453
Query: 141 -VDALVGLVLQGRPR--GPATAIGVDQVVLQEA--------------GVQLGVLVVAVDA 183
V L G +G R GP + + ++LQ+A +G LV A
Sbjct: 454 RVRGLRGAGPEGAGRLAGPWRGLRLQTLLLQDAPHGGAHEHVLVAVPATGVGGLVGAGQG 513
Query: 184 AAALRGASPVRGPGCIPHARARAVLGLFALHLHGLAAQGADAVRHLFVVDLHQAALVVKL 243
A A G +P R P + G + G + + L + LH L
Sbjct: 514 AVAAAGNAPERLPAGVQGCGEEVGRGARGDRVAGGHVEVVPVGQQLAICMLH-GQLGTAP 572
Query: 244 DVHVEGLLG-VRPGLAMALADPLEVGPERRHAGGGSPVVPFPRRGCPGPAGGPGPGLTRR 302
HV +LG G A +A P R GG P P R G G GGPG +
Sbjct: 573 HAHVPTVLGGALGGRAGLVAAPARRECPARRRGGCWPRRPRRRHGGGGGGGGPG----LQ 628
Query: 303 TLAVGPGLGLLGGRRVGSVGGRWLRARRGRSGLGGAVGGL-----RRAPEAPSLPVIALL 357
L G G G V + AR GR+G G V + AP L V +L
Sbjct: 629 DLLGGGHAGGAHGHVVVAPAAAAPTAREGRAGRHGHVAVVCPQVAAGAPVGADLDVSVVL 688
Query: 358 FLG 360
++G
Sbjct: 689 WVG 691
Score = 32.3 bits (72), Expect = 0.77
Identities = 50/153 (32%), Positives = 61/153 (39%), Gaps = 24/153 (15%)
Query: 91 AAVRGI-AASAILKTPGGVGPAG----PGKALLLLRGALAAQERALALPFHHAPDVDALV 145
AA +G+ AA PG G PG RG + + A+AL P AL
Sbjct: 910 AAAQGVRAAQGRAHRPGAQGAPSHRHRPGA-----RGRRSRRRAAVALAGGAHPARAAL- 963
Query: 146 GLVLQGRPRGPATAIGVDQV-VLQEAGVQLGVLVVAVDAAAA--LRGASPVRGPGCIPHA 202
GR RG A+G + AG Q+ +VVA A A +RG P R
Sbjct: 964 -----GRRRGGGQAVGARAAHQARLAGGQVDQVVVAARAGDADGVRGRRPRRLA-----L 1013
Query: 203 RARAVLGLFALHLHGLAAQGADAVRHLFVVDLH 235
AR L LHGL D +RH VV LH
Sbjct: 1014 TARPELEELLERLHGLQDGLVDVLRHHRVVRLH 1046
>gi|126352608 elastin isoform e precursor [Homo sapiens]
Length = 705
Score = 42.0 bits (97), Expect = 0.001
Identities = 105/370 (28%), Positives = 133/370 (35%), Gaps = 57/370 (15%)
Query: 9 GPDLPGLADAHDGGLGHDNRAVPVPLMALRRGGTAAVEGLLRVLRGRAAFVPEHAVGGGA 68
GP + G+ A G+G +PV A G AAV G++ A A
Sbjct: 330 GPGVVGVPGAGVPGVGVPGAGIPVVPGAGIPG--AAVPGVVSPEAAAKA-----AAKAAK 382
Query: 69 WGHAAGLARGEV----LLAGGEVLIGAAVRGIAASAILKTPGGVGPAG--PGKALLLLRG 122
+G G+ G + + AGG G V GI A + GGV G PG +
Sbjct: 383 YGARPGVGVGGIPTYGVGAGGFPGFGVGVGGIPGVAGVPGVGGVPGVGGVPGVGISPEAQ 442
Query: 123 ALAAQERALALPFHHAPDVDALVGLVLQGRPRGPATAIGVDQVVLQEAGVQLGVLVVAVD 182
A AA A A + P V G+ G A +GV V G+ GV V
Sbjct: 443 AAAA---AKAAKYGLVPGVGVAPGV-------GVAPGVGVAPGV----GLAPGVGVAPGV 488
Query: 183 AAAALRGASPVRGPGCIPHARARAVLGLFALHLHGLAAQGADAVR---HLFVVDLHQAAL 239
A G +P GPG + A A L A GA + V L A
Sbjct: 489 GVAPGVGVAPGIGPGGVAAAAKSAAKVAAKAQLRAAAGLGAGIPGLGVGVGVPGLGVGAG 548
Query: 240 VVKLDVH--VEGLLGVRPGLAMALADPLEVGPERRHAGGGSPVVPFPRRGCPGPAGGPGP 297
V L V V G G PG A+A A + G GG + G PG G GP
Sbjct: 549 VPGLGVGAGVPGF-GAVPG-ALAAAKAAKYGAAVPGVLGGLGALGGV--GIPGGVVGAGP 604
Query: 298 ----------------GLTRRTLAVGPGLGLLGGRRVGSVGG-----RWLRARRGRSGLG 336
GL G G+G LG VG +GG A+ G +GLG
Sbjct: 605 AAAAAAAKAAAKAAQFGLVGAAGLGGLGVGGLGVPGVGGLGGIPPAAAAKAAKYGAAGLG 664
Query: 337 GAVGGLRRAP 346
G +GG + P
Sbjct: 665 GVLGGAGQFP 674
>gi|126352440 elastin isoform a precursor [Homo sapiens]
Length = 724
Score = 41.6 bits (96), Expect = 0.001
Identities = 109/388 (28%), Positives = 134/388 (34%), Gaps = 70/388 (18%)
Query: 3 GALAIVGPDLPGLADAHDG-----GLGHDNRAVP---VPLMALRRGGTAA---------V 45
G + + G +PG+ G G G AVP P A + AA V
Sbjct: 332 GVVGVPGAGVPGVGVPGAGIPVVPGAGIPGAAVPGVVSPEAAAKAAAKAAKYGARPGVGV 391
Query: 46 EGLLRVLRGRAAFVPEHAVG-GGAWGHAAGLARGEVLLAGGEVLIGAAVRGIAASAILKT 104
G+ G F P VG GG G A G V GG +G + AA+A
Sbjct: 392 GGIPTYGVGAGGF-PGFGVGVGGIPGVAGVPGVGGVPGVGGVPGVGISPEAQAAAAAKAA 450
Query: 105 PGGVGPAGPGKALLLLRGALAAQERALALPFHHAPDVDALVGLVLQGRPRGPATAIGVDQ 164
GVG A AA+ A A F P V G+ G A +GV
Sbjct: 451 KYGVGTPA----------AAAAKAAAKAAQFGLVPGVGVAPGV-------GVAPGVGVAP 493
Query: 165 VVLQEAGVQLGVLVVAVDAAAALRGASPVRGPGCIPHARARAVLGLFALHLHGLAAQGAD 224
V G+ GV V A G +P GPG + A A L A GA
Sbjct: 494 GV----GLAPGVGVAPGVGVAPGVGVAPGIGPGGVAAAAKSAAKVAAKAQLRAAAGLGAG 549
Query: 225 AVR---HLFVVDLHQAALVVKLDVH--VEGLLGVRPGLAMALADPLEVGPERRHAGGGSP 279
+ V L A V L V V G G PG A+A A + G GG
Sbjct: 550 IPGLGVGVGVPGLGVGAGVPGLGVGAGVPGF-GAVPG-ALAAAKAAKYGAAVPGVLGGLG 607
Query: 280 VVPFPRRGCPGPAGGPGP----------------GLTRRTLAVGPGLGLLGGRRVGSVGG 323
+ G PG G GP GL G G+G LG VG +GG
Sbjct: 608 ALGGV--GIPGGVVGAGPAAAAAAAKAAAKAAQFGLVGAAGLGGLGVGGLGVPGVGGLGG 665
Query: 324 -----RWLRARRGRSGLGGAVGGLRRAP 346
A+ G +GLGG +GG + P
Sbjct: 666 IPPAAAAKAAKYGAAGLGGVLGGAGQFP 693
>gi|39930511 collagen and calcium binding EGF domains 1 [Homo
sapiens]
Length = 406
Score = 39.7 bits (91), Expect = 0.005
Identities = 37/109 (33%), Positives = 42/109 (38%), Gaps = 11/109 (10%)
Query: 255 PGLAMALADPLEVGPERRHAGGGSPVVPFPRRGCPGPAGGPGPGLTRRTLAVGPGLGLLG 314
PGL P GP+ GSP P G PGP G PGP + + P L +
Sbjct: 249 PGLPGGQGPPGSPGPK------GSPGFP----GMPGPPGQPGPRGSMGPMGPSPDLSHIK 298
Query: 315 GRRVGSVGGRWLRARRGRSGLGGAVGGLRRAPEAPSLPVIALLFLGQQR 363
R G VG R G G GA G R +P P LL L R
Sbjct: 299 QGRRGPVGPPGAPGRDGSKGERGAPGP-RGSPGPPGSFDFLLLMLADIR 346
>gi|239754887 PREDICTED: hypothetical protein XP_002346152 [Homo
sapiens]
Length = 517
Score = 39.3 bits (90), Expect = 0.006
Identities = 48/153 (31%), Positives = 63/153 (41%), Gaps = 5/153 (3%)
Query: 239 LVVKLDVHVEGLLGVRPGLAMALADPLEVGPERRHAGGGSPVVPFPRRGCPGPAGGPGPG 298
LV+ L +H+E RPG A ++ R+ A + G G G
Sbjct: 133 LVLVLRLHLEAAPAARPGRAHRAVVHVKGAGWRQEARNRGTRGLWAESGVHGTGGRLRGA 192
Query: 299 LTRRTL--AVGPGLGLLGGRRVGSVGGRWLRA-RRGRSGLGGAVGGLRRAPEAPSLPVIA 355
R L AVG G + G R G + A +RGR G G V RR + ++ V+A
Sbjct: 193 SVVRDLRVAVGAGRRAVPGHRGGEESRVGVHAVQRGRVGRGQRVAVERRRAQTLAVAVVA 252
Query: 356 LLFLGQQRLQVDHAEALLVHLLLQAPNGGLAAL 388
QQR EALL L QA +G AAL
Sbjct: 253 AHVRRQQRRA--GGEALLGELEAQAVHGHAAAL 283
>gi|239749426 PREDICTED: hypothetical protein XP_002347042 [Homo
sapiens]
Length = 517
Score = 39.3 bits (90), Expect = 0.006
Identities = 48/153 (31%), Positives = 63/153 (41%), Gaps = 5/153 (3%)
Query: 239 LVVKLDVHVEGLLGVRPGLAMALADPLEVGPERRHAGGGSPVVPFPRRGCPGPAGGPGPG 298
LV+ L +H+E RPG A ++ R+ A + G G G
Sbjct: 133 LVLVLRLHLEAAPAARPGRAHRAVVHVKGAGWRQEARNRGTRGLWAESGVHGTGGRLRGA 192
Query: 299 LTRRTL--AVGPGLGLLGGRRVGSVGGRWLRA-RRGRSGLGGAVGGLRRAPEAPSLPVIA 355
R L AVG G + G R G + A +RGR G G V RR + ++ V+A
Sbjct: 193 SVVRDLRVAVGAGRRAVPGHRGGEESRVGVHAVQRGRVGRGQRVAVERRRAQTLAVAVVA 252
Query: 356 LLFLGQQRLQVDHAEALLVHLLLQAPNGGLAAL 388
QQR EALL L QA +G AAL
Sbjct: 253 AHVRRQQRRA--GGEALLGELEAQAVHGHAAAL 283
>gi|239743560 PREDICTED: hypothetical protein XP_002342893 [Homo
sapiens]
Length = 517
Score = 39.3 bits (90), Expect = 0.006
Identities = 48/153 (31%), Positives = 63/153 (41%), Gaps = 5/153 (3%)
Query: 239 LVVKLDVHVEGLLGVRPGLAMALADPLEVGPERRHAGGGSPVVPFPRRGCPGPAGGPGPG 298
LV+ L +H+E RPG A ++ R+ A + G G G
Sbjct: 133 LVLVLRLHLEAAPAARPGRAHRAVVHVKGAGWRQEARNRGTRGLWAESGVHGTGGRLRGA 192
Query: 299 LTRRTL--AVGPGLGLLGGRRVGSVGGRWLRA-RRGRSGLGGAVGGLRRAPEAPSLPVIA 355
R L AVG G + G R G + A +RGR G G V RR + ++ V+A
Sbjct: 193 SVVRDLRVAVGAGRRAVPGHRGGEESRVGVHAVQRGRVGRGQRVAVERRRAQTLAVAVVA 252
Query: 356 LLFLGQQRLQVDHAEALLVHLLLQAPNGGLAAL 388
QQR EALL L QA +G AAL
Sbjct: 253 AHVRRQQRRA--GGEALLGELEAQAVHGHAAAL 283
>gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens]
Length = 2944
Score = 39.3 bits (90), Expect = 0.006
Identities = 44/117 (37%), Positives = 48/117 (41%), Gaps = 14/117 (11%)
Query: 249 GLLGVR--PGLAMALADPLEVGPERRHAGGGSPVVPFPRRGCPGPAGGPGPGLTRRTLAV 306
GL G R PG DP G AG P P +G PG G PG GLT T AV
Sbjct: 2168 GLQGPRGPPGPVGGHGDPGPPGAPGL-AGPAGPQGPSGLKGEPGETGPPGRGLTGPTGAV 2226
Query: 307 G-PG----LGLLGGR----RVGSVGGRWLRARRGRSGLGGAVG--GLRRAPEAPSLP 352
G PG GL+G + G VG GR G G G G P +P LP
Sbjct: 2227 GLPGPPGPSGLVGPQGSPGLPGQVGETGKPGAPGRDGASGKDGDRGSPGVPGSPGLP 2283
Score = 37.4 bits (85), Expect = 0.024
Identities = 44/114 (38%), Positives = 48/114 (42%), Gaps = 20/114 (17%)
Query: 249 GLLGVRPGLAMALADPLEVGPERRHA---------GGGSPVVPFPRRGCPGPAGGPGP-G 298
GL G PGL DP E GP GG P +P R+G PGP+G PGP G
Sbjct: 1323 GLKG-SPGLPGPRGDPGERGPRGPKGEPGAPGQVIGGEGPGLP-GRKGDPGPSGPPGPRG 1380
Query: 299 LTRRTLAVGPGLGLLGGRRVGSVGGRWLRARRGRSGLGGAVGGLRRAPEAPSLP 352
GP GL G G G R RG G G GG+ AP P LP
Sbjct: 1381 PLGDPGPRGPP-GLPGTAMKGDKGD---RGERGPPGPG--EGGI--APGEPGLP 1426
Score = 35.8 bits (81), Expect = 0.069
Identities = 40/117 (34%), Positives = 47/117 (40%), Gaps = 20/117 (17%)
Query: 241 VKLDVHVEGLLGVRPGLAMALADPLEVGPERRHAGGGSP------VVPFPRRGCPGPAGG 294
VK D+ + GL PG + P + GP R G P P R G PGP G
Sbjct: 2387 VKGDLGLPGL----PGAPGVVGFPGQTGP-RGEMGQPGPSGERGLAGPPGREGIPGPLGP 2441
Query: 295 PGPGLTRRTLAVGP--GLGLLGGRRVGSVGGRWLRARRGRSGLGGAVGGLRRAPEAP 349
PGP +VGP GL G + VG R RG G+ G G R E P
Sbjct: 2442 PGP-----PGSVGPPGASGLKGDKGDPGVGLPGPRGERGEPGIRGEDG--RPGQEGP 2491
Score = 34.7 bits (78), Expect = 0.15
Identities = 29/83 (34%), Positives = 36/83 (43%), Gaps = 7/83 (8%)
Query: 277 GSPVVPFPRR--GCPGPAGGPGPGLTRRTLAVGPGLGLLGGR-RVGSVGGRWLRARRGRS 333
G+P + P+ G PGP G PG G V G G G R GS G + L RG
Sbjct: 1878 GAPGILGPQGPPGLPGPVGPPGQGFP----GVPGGTGPKGDRGETGSKGEQGLPGERGLR 1933
Query: 334 GLGGAVGGLRRAPEAPSLPVIAL 356
G G+V + R E + AL
Sbjct: 1934 GEPGSVPNVDRLLETAGIKASAL 1956
Score = 33.9 bits (76), Expect = 0.26
Identities = 32/94 (34%), Positives = 39/94 (41%), Gaps = 10/94 (10%)
Query: 249 GLLGVRPGLAMALADPLEVGPERRHAGGGSPVVPFPR--RGCPGPAGGPGPGLTRRTLAV 306
GL G PG+ + + + G GSP P+ RG PGP G PG R +
Sbjct: 1658 GLRGA-PGVRGPVGEKGDQGDPGEDGRNGSPGSSGPKGDRGEPGPPGPPG-----RLVDT 1711
Query: 307 GPGLGLLGGRRVGSVGGRWLRARRGRSGLGGAVG 340
GPG G G G R +G GL GA G
Sbjct: 1712 GPGAREKG--EPGDRGQEGPRGPKGDPGLPGAPG 1743
Score = 33.5 bits (75), Expect = 0.34
Identities = 28/72 (38%), Positives = 31/72 (43%), Gaps = 9/72 (12%)
Query: 277 GSPVVPFP--RRGCPGPAGGPG------PGLTRRTLAVGPGLGLLGGRRVGSVGGRWLRA 328
GSP +P P +G PGP G PG PG A G G L G G+ G R L
Sbjct: 2278 GSPGLPGPVGPKGEPGPTGAPGQAVVGLPGAKGEKGAPGGLAGDLVG-EPGAKGDRGLPG 2336
Query: 329 RRGRSGLGGAVG 340
RG G G G
Sbjct: 2337 PRGEKGEAGRAG 2348
Score = 32.7 bits (73), Expect = 0.59
Identities = 33/97 (34%), Positives = 40/97 (41%), Gaps = 16/97 (16%)
Query: 266 EVGPERRHAGGGSPVVPFPRRGCPGPAGGPGPGLTRRTLAVGPGL-------GLLGGR-R 317
E G G P +P G PGP G PGP ++ GPGL GL G +
Sbjct: 2065 EKGERGEQGRDGPPGLP----GTPGPPGPPGPKVS--VDEPGPGLSGEQGPPGLKGAKGE 2118
Query: 318 VGSVGGRWLRARRGRSGLGGAVG--GLRRAPEAPSLP 352
GS G + + RG G+ G G G R P LP
Sbjct: 2119 PGSNGDQGPKGDRGVPGIKGDRGEPGPRGQDGNPGLP 2155
Score = 32.3 bits (72), Expect = 0.77
Identities = 66/226 (29%), Positives = 81/226 (35%), Gaps = 68/226 (30%)
Query: 175 GVLVVAVDAAAALRGASPVRGPGCIPHARARAV-LGLFALHLHGL-------AAQGADAV 226
GV+V+ VD P+RG P A+A L + L + G A G D+V
Sbjct: 1159 GVMVLLVD--------EPLRGDIFSPIREAQASGLNVVMLGMAGADPEQLRRLAPGMDSV 1210
Query: 227 RHLFVVDLHQAALVVKLDVHVEGLLGV----------RPGLAMALA------DPLEVGPE 270
+ F VD + LD V GL RP +P E+G
Sbjct: 1211 QTFFAVDDGPS-----LDQAVSGLATALCQASFTTQPRPEPCPVYCPKGQKGEPGEMGLR 1265
Query: 271 RRHAGGGSPVVPFPRRGCPGPAGGPG----------PGLTRRTLAVG----------PGL 310
+ G P +P R G PGP G PG PG R + G PGL
Sbjct: 1266 GQVGPPGDPGLP-GRTGAPGPQGPPGSATAKGERGFPGADGRPGSPGRAGNPGTPGAPGL 1324
Query: 311 ----GLLGGRRVGSVGGRWLRARRGRSGLGGAVGGLRRAPEAPSLP 352
GL G R G G R R +G G G V G E P LP
Sbjct: 1325 KGSPGLPGPR--GDPGERGPRGPKGEPGAPGQVIG----GEGPGLP 1364
Score = 29.6 bits (65), Expect = 5.0
Identities = 31/85 (36%), Positives = 31/85 (36%), Gaps = 20/85 (23%)
Query: 286 RGCPGPAGGPGPGLTRR------TLAVGPGL-------GLLGGRRVGSVGGRWLRARRGR 332
RG PGP G PG L R LA PG G GG VG G R RG
Sbjct: 2008 RGDPGPQGPPGLALGERGPPGPSGLAGEPGKPGIPGLPGRAGG--VGEAGRPGERGERGE 2065
Query: 333 SGLGGAVG-----GLRRAPEAPSLP 352
G G G GL P P P
Sbjct: 2066 KGERGEQGRDGPPGLPGTPGPPGPP 2090
Score = 29.6 bits (65), Expect = 5.0
Identities = 29/76 (38%), Positives = 33/76 (43%), Gaps = 16/76 (21%)
Query: 277 GSPVVPFPRRGCPGPAGGPG-------PGLTRRTLAVG-PG----LGLLGGRRVGSVGGR 324
G P V P G PGP G PG PGL VG PG G +G + G G R
Sbjct: 2369 GDPGVGVP--GSPGPPGPPGVKGDLGLPGLPGAPGVVGFPGQTGPRGEMG--QPGPSGER 2424
Query: 325 WLRARRGRSGLGGAVG 340
L GR G+ G +G
Sbjct: 2425 GLAGPPGREGIPGPLG 2440
>gi|47271406 bin3, bicoid-interacting 3 [Homo sapiens]
Length = 689
Score = 39.3 bits (90), Expect = 0.006
Identities = 46/135 (34%), Positives = 57/135 (42%), Gaps = 19/135 (14%)
Query: 183 AAAALRGASPVRGPG-CIPHARA-RAVLGLFALHLHGLAAQGADAVRHLFVVDLHQAALV 240
A+ LRG + RGPG C P A + A +G + ++ G A +H Q+
Sbjct: 39 ASGELRGGTE-RGPGRCAPSAGSPAAAVGRESPGAAATSSSGPQAQQHRGGGPQAQS--- 94
Query: 241 VKLDVHVEGLLGVRPGLAMALADPLEVGPERRHAGG---GSPVVPFPRRGC-PGPAGGPG 296
H E L PG A P +VG ERR GG G P P PR G P G G
Sbjct: 95 -----HGEARLSDPPGRAA----PPDVGEERRGGGGTELGPPAPPRPRNGYQPHRPPGGG 145
Query: 297 PGLTRRTLAVGPGLG 311
G R + VG G G
Sbjct: 146 GGKRRNSCNVGGGGG 160
>gi|156151396 heterogeneous nuclear ribonucleoprotein R isoform 3
[Homo sapiens]
Length = 535
Score = 38.5 bits (88), Expect = 0.011
Identities = 28/71 (39%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
Query: 276 GGSPVVPFPR-RGCPGPAGGPGPGLTRRTLAVGPGLGLLGGRRVGSVGGRWLRARRGRSG 334
GG P PR RG P P G G ++R +GP G GGR + R +R R
Sbjct: 409 GGRGAPPPPRGRGAPPPRGRAG--YSQRGAPLGPPRGSRGGRGGPAQQQRGRGSRGSRGN 466
Query: 335 LGGAVGGLRRA 345
GG VGG R+A
Sbjct: 467 RGGNVGGKRKA 477
>gi|156151394 heterogeneous nuclear ribonucleoprotein R isoform 1
[Homo sapiens]
Length = 636
Score = 38.5 bits (88), Expect = 0.011
Identities = 28/71 (39%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
Query: 276 GGSPVVPFPR-RGCPGPAGGPGPGLTRRTLAVGPGLGLLGGRRVGSVGGRWLRARRGRSG 334
GG P PR RG P P G G ++R +GP G GGR + R +R R
Sbjct: 510 GGRGAPPPPRGRGAPPPRGRAG--YSQRGAPLGPPRGSRGGRGGPAQQQRGRGSRGSRGN 567
Query: 335 LGGAVGGLRRA 345
GG VGG R+A
Sbjct: 568 RGGNVGGKRKA 578
>gi|156151392 heterogeneous nuclear ribonucleoprotein R isoform 4
[Homo sapiens]
Length = 532
Score = 38.5 bits (88), Expect = 0.011
Identities = 28/71 (39%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
Query: 276 GGSPVVPFPR-RGCPGPAGGPGPGLTRRTLAVGPGLGLLGGRRVGSVGGRWLRARRGRSG 334
GG P PR RG P P G G ++R +GP G GGR + R +R R
Sbjct: 406 GGRGAPPPPRGRGAPPPRGRAG--YSQRGAPLGPPRGSRGGRGGPAQQQRGRGSRGSRGN 463
Query: 335 LGGAVGGLRRA 345
GG VGG R+A
Sbjct: 464 RGGNVGGKRKA 474
>gi|5031755 heterogeneous nuclear ribonucleoprotein R isoform 2
[Homo sapiens]
Length = 633
Score = 38.5 bits (88), Expect = 0.011
Identities = 28/71 (39%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
Query: 276 GGSPVVPFPR-RGCPGPAGGPGPGLTRRTLAVGPGLGLLGGRRVGSVGGRWLRARRGRSG 334
GG P PR RG P P G G ++R +GP G GGR + R +R R
Sbjct: 507 GGRGAPPPPRGRGAPPPRGRAG--YSQRGAPLGPPRGSRGGRGGPAQQQRGRGSRGSRGN 564
Query: 335 LGGAVGGLRRA 345
GG VGG R+A
Sbjct: 565 RGGNVGGKRKA 575
>gi|5174633 receptor for egg jelly-like protein precursor [Homo
sapiens]
Length = 2253
Score = 37.7 bits (86), Expect = 0.018
Identities = 49/139 (35%), Positives = 61/139 (43%), Gaps = 19/139 (13%)
Query: 253 VRPGLAMALADPLEVGPERRHAGGGSPVVPFPRRGCPGPAGGPGPGLTRRTLAVGPGLGL 312
+RPG A+ L +G + G P+ P PR +G PG GL R PGLG+
Sbjct: 1 MRPGPALLL-----LGVGLSLSVGRLPLPPVPRGAQAAVSGAPG-GLLRGA----PGLGV 50
Query: 313 LGGRRVGSVGGRWLRA----RRGRSGLGGAVGGLRRAPEAPSLPVIALLFLGQQRLQVDH 368
GGR + S+ +RA GR L GG R L V+ L QRL
Sbjct: 51 RGGRALLSLRPSAVRAGGAVLSGRGSLCFPHGGTGRRWYCLDLRVL----LSAQRLPWPA 106
Query: 369 AEAL-LVHLLLQAPNGGLA 386
A AL LV L L A G L+
Sbjct: 107 APALALVDLQLSARGGRLS 125
>gi|87196339 collagen, type VI, alpha 1 precursor [Homo sapiens]
Length = 1028
Score = 37.0 bits (84), Expect = 0.031
Identities = 35/96 (36%), Positives = 39/96 (40%), Gaps = 14/96 (14%)
Query: 248 EGLLGVRPGLAMALADPLEVGP--ERRHAGGGSPVVPFPRRGCPGPAGGPG-PGLTRRTL 304
EG +GV PG DP E GP + + G P RG PGPAG PG PGL
Sbjct: 457 EGPVGV-PG------DPGEAGPIGPKGYRGDEGPPGSEGARGAPGPAGPPGDPGLMGERG 509
Query: 305 AVGPGLGLLGGRRVGSVGGRWLRARRGRSGLGGAVG 340
GP G G G RG G+ G G
Sbjct: 510 EDGPA----GNGTEGFPGFPGYPGNRGAPGINGTKG 541
>gi|145701009 acetylcholinesterase collagen-like tail subunit
isoform III precursor [Homo sapiens]
Length = 421
Score = 36.6 bits (83), Expect = 0.041
Identities = 30/88 (34%), Positives = 35/88 (39%), Gaps = 6/88 (6%)
Query: 255 PGLAMALADPLEVGPERRHAGGGSPVVPFPRRGCPGPAGGPGPGLTRRTLAVGPGLGLLG 314
PG + E+G R G P VP G PGP G PGP R +GL G
Sbjct: 79 PGKTGPKGEKGELGRPGRKGRPGPPGVP----GMPGPIGWPGPEGPRGEKGDLGMMGLPG 134
Query: 315 GRRVGSVGGRWLRARRGRSGLGGAVGGL 342
R G +G + RG G G G L
Sbjct: 135 SR--GPMGSKGYPGSRGEKGSRGEKGDL 160
>gi|18105018 acetylcholinesterase collagen-like tail subunit isoform
II [Homo sapiens]
Length = 445
Score = 36.6 bits (83), Expect = 0.041
Identities = 30/88 (34%), Positives = 35/88 (39%), Gaps = 6/88 (6%)
Query: 255 PGLAMALADPLEVGPERRHAGGGSPVVPFPRRGCPGPAGGPGPGLTRRTLAVGPGLGLLG 314
PG + E+G R G P VP G PGP G PGP R +GL G
Sbjct: 103 PGKTGPKGEKGELGRPGRKGRPGPPGVP----GMPGPIGWPGPEGPRGEKGDLGMMGLPG 158
Query: 315 GRRVGSVGGRWLRARRGRSGLGGAVGGL 342
R G +G + RG G G G L
Sbjct: 159 SR--GPMGSKGYPGSRGEKGSRGEKGDL 184
>gi|18105016 acetylcholinesterase collagen-like tail subunit isoform
I precursor [Homo sapiens]
Length = 455
Score = 36.6 bits (83), Expect = 0.041
Identities = 30/88 (34%), Positives = 35/88 (39%), Gaps = 6/88 (6%)
Query: 255 PGLAMALADPLEVGPERRHAGGGSPVVPFPRRGCPGPAGGPGPGLTRRTLAVGPGLGLLG 314
PG + E+G R G P VP G PGP G PGP R +GL G
Sbjct: 113 PGKTGPKGEKGELGRPGRKGRPGPPGVP----GMPGPIGWPGPEGPRGEKGDLGMMGLPG 168
Query: 315 GRRVGSVGGRWLRARRGRSGLGGAVGGL 342
R G +G + RG G G G L
Sbjct: 169 SR--GPMGSKGYPGSRGEKGSRGEKGDL 194
>gi|150170699 kinesin family member 26A [Homo sapiens]
Length = 1882
Score = 36.6 bits (83), Expect = 0.041
Identities = 50/176 (28%), Positives = 71/176 (40%), Gaps = 33/176 (18%)
Query: 14 GLADAHDGGL---GHDNRAVP---VPLMALRRGGTAAVEGLLRVLRGRAAFVPEHAVGGG 67
GLA + G G RAVP VP + G A R +A P+ VGGG
Sbjct: 1443 GLAHSSSKGREAPGRPPRAVPKLGVPPSSPTHGPAPAC----RSGAAKAVGAPKPPVGGG 1498
Query: 68 AWGHAAGLARGEVLLAGGEVLIGAAVRGIAASAILKTPGG--VGP-----AGPGKALLLL 120
+G L+AGG +G +V+ AS ++PGG GP AGP
Sbjct: 1499 ---------KGRGLVAGGSRALGPSVKLSTASVTGRSPGGPVAGPRAAPRAGPSVGAKAG 1549
Query: 121 RGALAAQERALALPFHHAPDVDALVGLVLQGRP-RGPATAIGVDQVVLQEAGVQLG 175
RG + ++AL ++ A G P RG ++ D ++GV +G
Sbjct: 1550 RGTVMGTKQALRAAHSRVHELSA------SGAPGRGGSSWGSADSDSGHDSGVNVG 1599
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 36.2 bits (82), Expect = 0.053
Identities = 20/46 (43%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Query: 255 PGLAMALADPLEVGPERRHAGGGS---PVVPFPRRGCPGPAGGPGP 297
PGL A L G + + GG S P+ P RG PGP G PGP
Sbjct: 153 PGLGGNFAPQLSYGYDEKSTGGISVPGPMGPSGPRGLPGPPGAPGP 198
Score = 32.3 bits (72), Expect = 0.77
Identities = 42/116 (36%), Positives = 47/116 (40%), Gaps = 34/116 (29%)
Query: 247 VEGLLGVR-----PGLAMALADPLEVGPERRHAGGGSPVVPFPRRGCPGPAGGPG----P 297
V GL G R PGL +P + GP A G RG PGP G PG P
Sbjct: 960 VVGLPGQRGERGFPGLPGPSGEPGKQGPSG--ASG--------ERGPPGPMGPPGLAGPP 1009
Query: 298 GLTRRTLAVG----PGLGLLGGRRVGSVGGRWLRARRGRSGLGGAVGGLRRAPEAP 349
G + R A G PG R GS G + R G +G GA G AP AP
Sbjct: 1010 GESGREGAPGAEGSPG-------RDGSPGAKGDRGETGPAGPPGAPG----APGAP 1054
Score = 32.3 bits (72), Expect = 0.77
Identities = 28/91 (30%), Positives = 32/91 (35%), Gaps = 19/91 (20%)
Query: 255 PGLAMALADPLEVGP-----ERRHAGGGSPVVPFPRRGCPGPAGGPGPGLTRRTLAVGPG 309
PG A P VGP +R G P P G GPAG GP +
Sbjct: 1045 PGAPGAPGAPGPVGPAGKSGDRGETGPAGPAGPVGPVGARGPAGPQGPRGDK-------- 1096
Query: 310 LGLLGGRRVGSVGGRWLRARRGRSGLGGAVG 340
G G R ++ RG SGL G G
Sbjct: 1097 ------GETGEQGDRGIKGHRGFSGLQGPPG 1121
Score = 30.0 bits (66), Expect = 3.8
Identities = 35/98 (35%), Positives = 38/98 (38%), Gaps = 11/98 (11%)
Query: 254 RPGLAMALADPLEVGP--ERRHAG-GGSPVVPFPRRGCPGPAGGPGPGLTRRTLAVGPGL 310
+ G A A P GP ER G GSP +G PGPAG PG V L
Sbjct: 612 KDGEAGAQGPPGPAGPAGERGEQGPAGSPGF----QGLPGPAGPPGEAGKPGEQGVPGDL 667
Query: 311 GLLGGRRVGSVGGRWLRARRGRSGLGGAVG--GLRRAP 346
G G G+ G R RG G G G G AP
Sbjct: 668 GAPGPS--GARGERGFPGERGVQGPPGPAGPRGANGAP 703
Score = 29.6 bits (65), Expect = 5.0
Identities = 39/114 (34%), Positives = 45/114 (39%), Gaps = 20/114 (17%)
Query: 247 VEGLLGV--RPGLAMALADPLEVGPERRHAGGGSPVVPFPRR--GCPGPAGGPG-PGLTR 301
V GL G PG A A D E GP G+ P R G PGPAG G PG
Sbjct: 762 VRGLTGPIGPPGPAGAPGDKGESGPSGPAGPTGARGAPGDRGEPGPPGPAGFAGPPGADG 821
Query: 302 RTLAVG-PG-LGLLGGR-------------RVGSVGGRWLRARRGRSGLGGAVG 340
+ A G PG G G +G+VG + RG +G GA G
Sbjct: 822 QPGAKGEPGDAGAKGDAGPPGPAGPAGPPGPIGNVGAPGAKGARGSAGPPGATG 875
Score = 29.3 bits (64), Expect = 6.5
Identities = 28/79 (35%), Positives = 30/79 (37%), Gaps = 20/79 (25%)
Query: 268 GPERRHAGGGSPVVPFPRRGCPGPAGGPGPGLTRRTLAVGPGLG------LLGGRRVGSV 321
GP R G P +P P PGP G PGP PGLG L G S
Sbjct: 127 GPPGRDGIPGQPGLPGP----PGPPGPPGP----------PGLGGNFAPQLSYGYDEKST 172
Query: 322 GGRWLRARRGRSGLGGAVG 340
GG + G SG G G
Sbjct: 173 GGISVPGPMGPSGPRGLPG 191
Score = 29.3 bits (64), Expect = 6.5
Identities = 26/83 (31%), Positives = 28/83 (33%), Gaps = 8/83 (9%)
Query: 275 GGGSPVVPFPRRGCPGPAGGPG-------PGLTRRTLAVGPGLGLLGGRRVGSVGGRWLR 327
G P P G PG G PG PG R A GP G+ G
Sbjct: 278 GDAGPAGPKGEPGSPGENGAPGQMGPRGLPGERGRPGAPGPAGARGNDGATGAAGPPGPT 337
Query: 328 ARRGRSGLGGAVGGLRRA-PEAP 349
G G GAVG A P+ P
Sbjct: 338 GPAGPPGFPGAVGAKGEAGPQGP 360
Score = 29.3 bits (64), Expect = 6.5
Identities = 33/96 (34%), Positives = 37/96 (38%), Gaps = 11/96 (11%)
Query: 255 PGLAMALADPLEVGPERRHAGGG--SPVVPFPRRGCPGPAGGPG-------PGLTRRTLA 305
PG + P GP + G G P R G GP G PG PG A
Sbjct: 886 PGPSGNAGPPGPPGPAGKEGGKGPRGETGPAGRPGEVGPPGPPGPAGEKGSPGADGPAGA 945
Query: 306 VG-PGLGLLGGRRVGSVGGRWLRARRGRSGLGGAVG 340
G PG + G+R G VG R RG GL G G
Sbjct: 946 PGTPGPQGIAGQR-GVVGLPGQRGERGFPGLPGPSG 980
>gi|187829730 BCL2 binding component 3 isoform 1 [Homo sapiens]
Length = 261
Score = 36.2 bits (82), Expect = 0.053
Identities = 31/82 (37%), Positives = 35/82 (42%), Gaps = 6/82 (7%)
Query: 269 PERRHAG-GGSPVVPFPRRGCPGPAGGPGPGLTRR-TLAVGPGLGLLGGRRVGSVGGRWL 326
P RRH GG P+ G P PA P PG + LA G G+ +R G GGR
Sbjct: 99 PTRRHRRPGGFPLA----WGSPQPAPRPAPGRSSALALAGGAAPGVARAQRPGGSGGRSH 154
Query: 327 RARRGRSGLGGAVGGLRRAPEA 348
G GG VG R P A
Sbjct: 155 PGGPGSPRGGGTVGPGDRGPAA 176
>gi|49574532 glycogen synthase kinase 3 alpha [Homo sapiens]
Length = 483
Score = 36.2 bits (82), Expect = 0.053
Identities = 21/59 (35%), Positives = 27/59 (45%)
Query: 56 AAFVPEHAVGGGAWGHAAGLARGEVLLAGGEVLIGAAVRGIAASAILKTPGGVGPAGPG 114
++F GGG G G A G GG+ +GA G+ AS+ PGG G G G
Sbjct: 20 SSFAEPGGGGGGGGGGPGGSASGPGGTGGGKASVGAMGGGVGASSSGGGPGGSGGGGSG 78
Score = 30.4 bits (67), Expect = 2.9
Identities = 31/84 (36%), Positives = 38/84 (45%), Gaps = 9/84 (10%)
Query: 268 GPERRHAGGG--SPVVPFPRRGCPGPAGGPGPGLTRRTLAVGPGLGLLGGRR-VGSVGGR 324
GP GG + F G G GG GPG + A GPG G GG+ VG++GG
Sbjct: 5 GPSGGGPGGSGRARTSSFAEPGGGGGGGGGGPGGS----ASGPG-GTGGGKASVGAMGG- 58
Query: 325 WLRARRGRSGLGGAVGGLRRAPEA 348
+ A G GG+ GG P A
Sbjct: 59 GVGASSSGGGPGGSGGGGSGGPGA 82
>gi|32964830 collagen, type VIII, alpha 2 [Homo sapiens]
Length = 703
Score = 36.2 bits (82), Expect = 0.053
Identities = 36/113 (31%), Positives = 43/113 (38%), Gaps = 27/113 (23%)
Query: 267 VGPERRHAGGGS-----PVVPFPRRGCPGPAGGPG-------------PGLTRRTLAVGP 308
VGP R G P++P +G PGP G PG PG+ + L P
Sbjct: 52 VGPPFREGKGQYLEMPLPLLPMDLKGEPGPPGKPGPRGPPGPPGFPGKPGMGKPGLHGQP 111
Query: 309 G-LGLLGGRRVGSVGGRWLRARRGRSGLGGAVG--------GLRRAPEAPSLP 352
G G G R+G G L + G G G G GLR P P LP
Sbjct: 112 GPAGPPGFSRMGKAGPPGLPGKVGPPGQPGLRGEPGIRGDQGLRGPPGPPGLP 164
Score = 33.9 bits (76), Expect = 0.26
Identities = 39/113 (34%), Positives = 44/113 (38%), Gaps = 31/113 (27%)
Query: 247 VEGLLGVRPGLAMALADPLEVGPERRHAGGGSPVVPFP-----RRGCPGPAGGPGPGLTR 301
V GLLG R G +P E GP+ GG P +P RRG PGP G GPG
Sbjct: 332 VPGLLGDR-GEPGEDGEPGEQGPQGL---GGPPGLPGSAGLPGRRGPPGPKGEAGPG--- 384
Query: 302 RTLAVGPGLGLLGGRRVGSVGGRWLRARRGRSGLGGAVG--GLRRAPEAPSLP 352
G G +R +G SGL G G G R P A P
Sbjct: 385 -----------------GPPGVPGIRGDQGPSGLAGKPGVPGERGLPGAHGPP 420
Score = 29.6 bits (65), Expect = 5.0
Identities = 34/102 (33%), Positives = 39/102 (38%), Gaps = 20/102 (19%)
Query: 261 LADPLEVGPERRHAGGGSPVVPFPRRGCPGPAGGPGPGLTRRTLAVGPGL-GLLGGR-RV 318
LA V ER G P P +G PG G PG GPG+ G LG + +
Sbjct: 401 LAGKPGVPGERGLPGAHGPPGPTGPKGEPGFTGRPG----------GPGVAGALGQKGDL 450
Query: 319 GSVGGRWLRARRGRSGLGGAVG--------GLRRAPEAPSLP 352
G G LR G GL G G GL+ P P P
Sbjct: 451 GLPGQPGLRGPSGIPGLQGPAGPIGPQGLPGLKGEPGLPGPP 492
Score = 29.3 bits (64), Expect = 6.5
Identities = 31/96 (32%), Positives = 37/96 (38%), Gaps = 12/96 (12%)
Query: 256 GLAMALADPLEVGPERRHAGGGSPVVPFPRR-------GCPGPAGGPGP----GLTRRTL 304
GL A D E GP G P P+ G PG AG PGP G
Sbjct: 243 GLPGAPGDKGESGPPGVPGPRGEPGAVGPKGPPGVDGVGVPGAAGLPGPQGPSGAKGEPG 302
Query: 305 AVGPGLGLLGGRRVGSVGGRWLRARRGRSGLGGAVG 340
GP GL+G G G + RG +G+ G +G
Sbjct: 303 TRGPP-GLIGPTGYGMPGLPGPKGDRGPAGVPGLLG 337
>gi|32140760 collagen, type XXVII, alpha 1 [Homo sapiens]
Length = 1860
Score = 36.2 bits (82), Expect = 0.053
Identities = 31/87 (35%), Positives = 41/87 (47%), Gaps = 8/87 (9%)
Query: 255 PGLAMALADPLEVGPERRHAGGGSPVVPFPRRGCPGPAGGPGPGLTRRTLAVGPGL-GLL 313
PG A + + GPE G P R+G PGP G PGP +R + + PGL GL
Sbjct: 714 PGPAGHPGEQGQPGPEGSPGAKGYP----GRQGLPGPVGDPGPKGSRGYIGL-PGLFGLP 768
Query: 314 GGRRVGSVGGRWLRARRGRSGLGGAVG 340
G G G + +RG+ G+ G G
Sbjct: 769 GSD--GERGLPGVPGKRGKMGMPGFPG 793
Score = 29.6 bits (65), Expect = 5.0
Identities = 23/67 (34%), Positives = 28/67 (41%), Gaps = 7/67 (10%)
Query: 286 RGCPGPAGGPGPGLTRRTLAVGPGLGLLGGRRVGSVGGRWLRARRGRSGLGGAVGGLRRA 345
RG GP G PGP + + G+G G G + RG G+ GA G RR
Sbjct: 1014 RGMMGPPGVPGPKGSMGHPGMPGGMG-----TPGEPGPQGPPGSRGPPGMRGAKG--RRG 1066
Query: 346 PEAPSLP 352
P P P
Sbjct: 1067 PRGPDGP 1073
Score = 29.6 bits (65), Expect = 5.0
Identities = 26/72 (36%), Positives = 32/72 (44%), Gaps = 10/72 (13%)
Query: 270 ERRHAGGGSPVVPFPRRGCPGPAGGPGPGLTRRTLAVGPGLGLLGGRRV-GSVGGRWLRA 328
E+ G P+ P +RG PG AG PG A GP G G + G +G R
Sbjct: 1458 EQGDDGDPGPMGPAGKRGNPGVAGLPG--------AQGPP-GFKGESGLPGQLGPPGKRG 1508
Query: 329 RRGRSGLGGAVG 340
GR+GL G G
Sbjct: 1509 TEGRTGLPGNQG 1520
Score = 29.3 bits (64), Expect = 6.5
Identities = 22/54 (40%), Positives = 28/54 (51%), Gaps = 5/54 (9%)
Query: 287 GCPGPAGGPGPGLTRRTLAVGPGLGLLGGRRVGSVGGRWLRARRGRSGLGGAVG 340
G PGP G PGP +R +L GP G G R+G+ G L G G+ G +G
Sbjct: 1273 GDPGPPGTPGPKGSRGSL--GP-TGAPG--RMGAQGEPGLAGYDGHKGIVGPLG 1321
Score = 28.9 bits (63), Expect = 8.5
Identities = 37/104 (35%), Positives = 42/104 (40%), Gaps = 10/104 (9%)
Query: 255 PGLAMALADPLEVGPERRHAGGGSPVVPFPR--RGCPGPAGGPG----PGLTRRTLAVG- 307
PGL+ A G G+P P + +G PGPAG PG PG A G
Sbjct: 678 PGLSPGKAHDGAKGDMGLPGLSGNPGPPGRKGHKGYPGPAGHPGEQGQPGPEGSPGAKGY 737
Query: 308 PGLGLLGGRRVGSVGGRWLRARRGRSGLGGAVG--GLRRAPEAP 349
PG L G VG G + R G GL G G G R P P
Sbjct: 738 PGRQGLPG-PVGDPGPKGSRGYIGLPGLFGLPGSDGERGLPGVP 780
>gi|239756833 PREDICTED: hypothetical protein [Homo sapiens]
Length = 281
Score = 35.8 bits (81), Expect = 0.069
Identities = 26/77 (33%), Positives = 30/77 (38%), Gaps = 8/77 (10%)
Query: 250 LLGVRPGLAMALADPLEVGPERRHAGGGSPVVPFPRRGCPGPAGGPGPGLTRRTLAVGPG 309
LL +RPG A P GSP + + RG G GPGPG R
Sbjct: 202 LLVLRPGAAQQQPQQPPRHPSHARRAAGSPELSWLPRGRKGT--GPGPGRAARP------ 253
Query: 310 LGLLGGRRVGSVGGRWL 326
LGL G GG W+
Sbjct: 254 LGLSAGHEAARWGGAWV 270
>gi|239751318 PREDICTED: hypothetical protein XP_002347804 [Homo
sapiens]
Length = 346
Score = 35.8 bits (81), Expect = 0.069
Identities = 26/77 (33%), Positives = 30/77 (38%), Gaps = 8/77 (10%)
Query: 250 LLGVRPGLAMALADPLEVGPERRHAGGGSPVVPFPRRGCPGPAGGPGPGLTRRTLAVGPG 309
LL +RPG A P GSP + + RG G GPGPG R
Sbjct: 267 LLVLRPGAAQQQPQQPPRHPSHARRAAGSPELSWLPRGRKGT--GPGPGRAARP------ 318
Query: 310 LGLLGGRRVGSVGGRWL 326
LGL G GG W+
Sbjct: 319 LGLSAGHEAARWGGAWV 335
>gi|239745817 PREDICTED: hypothetical protein XP_002343597 [Homo
sapiens]
Length = 346
Score = 35.8 bits (81), Expect = 0.069
Identities = 26/77 (33%), Positives = 30/77 (38%), Gaps = 8/77 (10%)
Query: 250 LLGVRPGLAMALADPLEVGPERRHAGGGSPVVPFPRRGCPGPAGGPGPGLTRRTLAVGPG 309
LL +RPG A P GSP + + RG G GPGPG R
Sbjct: 267 LLVLRPGAAQQQPQQPPRHPSHARRAAGSPELSWLPRGRKGT--GPGPGRAARP------ 318
Query: 310 LGLLGGRRVGSVGGRWL 326
LGL G GG W+
Sbjct: 319 LGLSAGHEAARWGGAWV 335
>gi|116256356 alpha 4 type IV collagen precursor [Homo sapiens]
Length = 1690
Score = 35.8 bits (81), Expect = 0.069
Identities = 34/95 (35%), Positives = 41/95 (43%), Gaps = 11/95 (11%)
Query: 264 PLEVG-PERRHAGGGSPVVPFPRRGCPGPAGGPG----PGLTRRTLAVG-PGLGLLGGRR 317
P E G P R + G P P G PG G PG PG + +VG PG + G+
Sbjct: 419 PGEAGIPGRPDSAPGKPGKP----GSPGLPGAPGLQGLPGSSVIYCSVGNPGPQGIKGK- 473
Query: 318 VGSVGGRWLRARRGRSGLGGAVGGLRRAPEAPSLP 352
VG GGR + +G GL G P P LP
Sbjct: 474 VGPPGGRGPKGEKGNEGLCACEPGPMGPPGPPGLP 508
Score = 35.4 bits (80), Expect = 0.091
Identities = 39/113 (34%), Positives = 46/113 (40%), Gaps = 15/113 (13%)
Query: 244 DVHVEGLLGVRPGLAMALADPLEVGPERRHAGGGSPVVPFPRRGCPGPAGGPGP----GL 299
DV G +G+ PGL DP + G SP P ++G PGP G GP G
Sbjct: 1196 DVGPPGPVGI-PGLKGERGDP--------GSPGISPPGPRGKKGPPGPPGSSGPPGPAGA 1246
Query: 300 TRRTLAVGPGLGLLGGRRVGSVGGRWLRARRGRSGLGGAVGGLRRAPEAPSLP 352
T R P G G + G G R G GL G+V LR P LP
Sbjct: 1247 TGRAPKDIPDPGPPGDQ--GPPGPDGPRGAPGPPGLPGSVDLLRGEPGDCGLP 1297
Score = 32.0 bits (71), Expect = 1.0
Identities = 38/109 (34%), Positives = 43/109 (39%), Gaps = 7/109 (6%)
Query: 249 GLLGVRPGLAMALADPLEVGPERRHAGGGSPVV--PFPRRGCPGPAGGPGP-GLTRRTLA 305
GL+G PGL L P R H G +V P P +G PG G PG G T
Sbjct: 329 GLVG-DPGL-FGLIGPKGDPGNRGHPGPPGVLVTPPLPLKGPPGDPGFPGRYGETGDVGP 386
Query: 306 VGPG--LGLLGGRRVGSVGGRWLRARRGRSGLGGAVGGLRRAPEAPSLP 352
GP LG G G +G + G GL G G R AP P
Sbjct: 387 PGPPGLLGRPGEACAGMIGPPGPQGFPGLPGLPGEAGIPGRPDSAPGKP 435
Score = 30.4 bits (67), Expect = 2.9
Identities = 31/88 (35%), Positives = 39/88 (44%), Gaps = 15/88 (17%)
Query: 255 PGLAMALADPLEVGPERRHAGGGSPVVPFPRRGCPGPAGGPGPGLTRRTLAVGPGLGLLG 314
PG + DP G E+ G SPV P PGP G PG ++ + P G LG
Sbjct: 721 PGFRGDMGDP-GFGGEK----GSSPVGP------PGPPGSPGVN-GQKGIPGDPAFGHLG 768
Query: 315 --GRRVGSVGGRWLRARRGRSGLGGAVG 340
G+R G G ++ RG G GA G
Sbjct: 769 PPGKR-GLSGVPGIKGPRGDPGCPGAEG 795
Score = 30.0 bits (66), Expect = 3.8
Identities = 33/104 (31%), Positives = 38/104 (36%), Gaps = 18/104 (17%)
Query: 255 PGLAMALADPLEVGPERRHAGGGSPVVPFPR-----RGCPGPAGGPGPGLTRRTLAVGPG 309
PG+ P GP G P P RG PG G PGP R L PG
Sbjct: 1108 PGIQGPRGSPGRPGPP---GSSGPPGCPGDHGMPGLRGQPGEMGDPGP----RGLQGDPG 1160
Query: 310 L----GLLGGRRVGSVGGRWLRARRGRSGLGGAVGGLRRAPEAP 349
+ G+ G GS G L +G+ G GA G P P
Sbjct: 1161 IPGPPGIKGPS--GSPGLNGLHGLKGQKGTKGASGLHDVGPPGP 1202
Score = 30.0 bits (66), Expect = 3.8
Identities = 28/77 (36%), Positives = 30/77 (38%), Gaps = 9/77 (11%)
Query: 268 GPERRHAGGGSPV---VPFPR-----RGCPGPAGGPGPGLTRRTLAVGPGLGLLGGRRVG 319
GP+ H G P +P P G PGP G PGP PGL G R G
Sbjct: 1331 GPQGPHGFPGPPGEKGLPGPPGRKGPTGLPGPRGEPGPPADVDDCPRIPGLPGAPGMR-G 1389
Query: 320 SVGGRWLRARRGRSGLG 336
G L RG SG G
Sbjct: 1390 PEGAMGLPGMRGPSGPG 1406
Score = 29.3 bits (64), Expect = 6.5
Identities = 34/102 (33%), Positives = 39/102 (38%), Gaps = 9/102 (8%)
Query: 255 PGLAMALADPLEVGPERRHAGGGSPVVPFP--RRGCPGPAGGPGPGLTRRTLAVGPGLGL 312
PG A P G H G P +P P G PGP G GP R L PG
Sbjct: 863 PGPAGMKGLPGLPGRPGAHGPPGLPGIPGPFGDDGLPGPPGPKGP----RGLPGFPGFPG 918
Query: 313 LGGRRVGSVGGRWLRARRGRSGLGGAVG--GLRRAPEAPSLP 352
G + G+ G + G G+ G G GLR A A P
Sbjct: 919 ERG-KPGAEGCPGAKGEPGEKGMSGLPGDRGLRGAKGAIGPP 959
Score = 28.9 bits (63), Expect = 8.5
Identities = 25/71 (35%), Positives = 30/71 (42%), Gaps = 12/71 (16%)
Query: 284 PRRGCPGPAGGPGPGLTRRTLAVGPGLGLLGG-RRVGSVGGRWLRARRGRSGLGGAVG-- 340
P +G GP G PGP GP +G LG +G G + +R RG G G G
Sbjct: 59 PEKGSRGPPGPPGP--------QGP-IGPLGAPGPIGLSGEKGMRGDRGPPGAAGDKGDK 109
Query: 341 GLRRAPEAPSL 351
G P P L
Sbjct: 110 GPTGVPGFPGL 120
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.322 0.143 0.433
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,415,161
Number of Sequences: 37866
Number of extensions: 1002693
Number of successful extensions: 6243
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 254
Number of HSP's that attempted gapping in prelim test: 4587
Number of HSP's gapped (non-prelim): 1619
length of query: 396
length of database: 18,247,518
effective HSP length: 104
effective length of query: 292
effective length of database: 14,309,454
effective search space: 4178360568
effective search space used: 4178360568
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.