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Search of human proteins with 239746631
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239746631 PREDICTED: hypothetical protein XP_002344231 [Homo
sapiens]
(127 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239757631 PREDICTED: hypothetical protein XP_002345506 [Homo ... 268 8e-73
gi|239752121 PREDICTED: hypothetical protein XP_002348120 [Homo ... 268 8e-73
gi|239746631 PREDICTED: hypothetical protein XP_002344231 [Homo ... 268 8e-73
gi|170932471 hypothetical protein LOC79703 [Homo sapiens] 39 8e-04
gi|231571356 nitric oxide synthase 3 isoform 4 [Homo sapiens] 39 0.001
gi|66348062 fumarylacetoacetate hydrolase domain containing 1 is... 39 0.001
gi|122939204 parkin co-regulated gene protein isoform 1 [Homo sa... 38 0.002
gi|34147403 intraflagellar transport 81-like isoform 2 [Homo sap... 37 0.004
gi|148839316 NIMA-related kinase 4 [Homo sapiens] 37 0.005
gi|219881538 hypothetical protein LOC199870 isoform 2 [Homo sapi... 36 0.009
gi|219881536 hypothetical protein LOC199870 isoform 1 [Homo sapi... 36 0.009
gi|187608508 centromere protein L isoform 1 [Homo sapiens] 35 0.012
gi|61969666 arginine-fifty homeobox [Homo sapiens] 35 0.012
gi|78000165 sorbin and SH3 domain containing 1 isoform 4 [Homo s... 35 0.020
gi|58533176 zinc finger, matrin type 1 isoform 1 [Homo sapiens] 32 0.13
gi|222446642 solute carrier family 36, member 3 isoform 1 [Homo ... 32 0.17
gi|51243063 MAD2L1 binding protein isoform 1 [Homo sapiens] 31 0.22
gi|148236061 hypothetical protein LOC285501 [Homo sapiens] 31 0.22
gi|118442834 RPGRIP1-like isoform a [Homo sapiens] 30 0.38
gi|239744440 PREDICTED: hypothetical protein XP_002343124 [Homo ... 30 0.50
gi|210147507 lipopolysaccharide-induced TNF-alpha factor isoform... 30 0.50
gi|226342962 synaptotagmin XIV isoform 2 [Homo sapiens] 29 1.1
gi|226342955 synaptotagmin XIV isoform 1 [Homo sapiens] 29 1.1
gi|58294160 breast carcinoma amplified sequence 4 isoform a [Hom... 29 1.1
gi|194363758 signal recognition particle 9kDa isoform 1 [Homo sa... 29 1.1
gi|6005810 mitogen-activated protein kinase kinase kinase kinase... 28 1.5
gi|9910146 chromosome 21 open reading frame 7 [Homo sapiens] 28 1.9
gi|78482627 ring finger protein 30 isoform 1 [Homo sapiens] 28 1.9
gi|239735607 nucleoredoxin-like 2 isoform 2 [Homo sapiens] 27 3.2
gi|239755619 PREDICTED: hypothetical protein [Homo sapiens] 27 3.2
>gi|239757631 PREDICTED: hypothetical protein XP_002345506 [Homo
sapiens]
Length = 127
Score = 268 bits (685), Expect = 8e-73
Identities = 127/127 (100%), Positives = 127/127 (100%)
Query: 1 MISGRVLWPSGKLDSFLWFYCQSMIRKKQFAVGLFFPSTKCKKKKESKIPKLILKCMYRE 60
MISGRVLWPSGKLDSFLWFYCQSMIRKKQFAVGLFFPSTKCKKKKESKIPKLILKCMYRE
Sbjct: 1 MISGRVLWPSGKLDSFLWFYCQSMIRKKQFAVGLFFPSTKCKKKKESKIPKLILKCMYRE 60
Query: 61 RLGLTLSSRLECCGAITAQGSFDLMGSGNPFTSVDQIAEITNVGNHTLLISCIFCRVGVS 120
RLGLTLSSRLECCGAITAQGSFDLMGSGNPFTSVDQIAEITNVGNHTLLISCIFCRVGVS
Sbjct: 61 RLGLTLSSRLECCGAITAQGSFDLMGSGNPFTSVDQIAEITNVGNHTLLISCIFCRVGVS 120
Query: 121 PCCRGWS 127
PCCRGWS
Sbjct: 121 PCCRGWS 127
>gi|239752121 PREDICTED: hypothetical protein XP_002348120 [Homo
sapiens]
Length = 127
Score = 268 bits (685), Expect = 8e-73
Identities = 127/127 (100%), Positives = 127/127 (100%)
Query: 1 MISGRVLWPSGKLDSFLWFYCQSMIRKKQFAVGLFFPSTKCKKKKESKIPKLILKCMYRE 60
MISGRVLWPSGKLDSFLWFYCQSMIRKKQFAVGLFFPSTKCKKKKESKIPKLILKCMYRE
Sbjct: 1 MISGRVLWPSGKLDSFLWFYCQSMIRKKQFAVGLFFPSTKCKKKKESKIPKLILKCMYRE 60
Query: 61 RLGLTLSSRLECCGAITAQGSFDLMGSGNPFTSVDQIAEITNVGNHTLLISCIFCRVGVS 120
RLGLTLSSRLECCGAITAQGSFDLMGSGNPFTSVDQIAEITNVGNHTLLISCIFCRVGVS
Sbjct: 61 RLGLTLSSRLECCGAITAQGSFDLMGSGNPFTSVDQIAEITNVGNHTLLISCIFCRVGVS 120
Query: 121 PCCRGWS 127
PCCRGWS
Sbjct: 121 PCCRGWS 127
>gi|239746631 PREDICTED: hypothetical protein XP_002344231 [Homo
sapiens]
Length = 127
Score = 268 bits (685), Expect = 8e-73
Identities = 127/127 (100%), Positives = 127/127 (100%)
Query: 1 MISGRVLWPSGKLDSFLWFYCQSMIRKKQFAVGLFFPSTKCKKKKESKIPKLILKCMYRE 60
MISGRVLWPSGKLDSFLWFYCQSMIRKKQFAVGLFFPSTKCKKKKESKIPKLILKCMYRE
Sbjct: 1 MISGRVLWPSGKLDSFLWFYCQSMIRKKQFAVGLFFPSTKCKKKKESKIPKLILKCMYRE 60
Query: 61 RLGLTLSSRLECCGAITAQGSFDLMGSGNPFTSVDQIAEITNVGNHTLLISCIFCRVGVS 120
RLGLTLSSRLECCGAITAQGSFDLMGSGNPFTSVDQIAEITNVGNHTLLISCIFCRVGVS
Sbjct: 61 RLGLTLSSRLECCGAITAQGSFDLMGSGNPFTSVDQIAEITNVGNHTLLISCIFCRVGVS 120
Query: 121 PCCRGWS 127
PCCRGWS
Sbjct: 121 PCCRGWS 127
>gi|170932471 hypothetical protein LOC79703 [Homo sapiens]
Length = 677
Score = 39.3 bits (90), Expect = 8e-04
Identities = 21/50 (42%), Positives = 29/50 (58%)
Query: 61 RLGLTLSSRLECCGAITAQGSFDLMGSGNPFTSVDQIAEITNVGNHTLLI 110
R LTL R EC GA++A + L GS + SV ++A IT+ +H LI
Sbjct: 106 RWSLTLLPRPECSGAVSAHCNLHLPGSSDSHASVPRVAGITDAHHHAWLI 155
>gi|231571356 nitric oxide synthase 3 isoform 4 [Homo sapiens]
Length = 629
Score = 38.9 bits (89), Expect = 0.001
Identities = 20/39 (51%), Positives = 23/39 (58%)
Query: 63 GLTLSSRLECCGAITAQGSFDLMGSGNPFTSVDQIAEIT 101
GLTL RLEC ITA S +L+ S NP TS Q+ T
Sbjct: 585 GLTLWPRLECSSTITAHCSLNLLDSSNPPTSTSQVVGTT 623
>gi|66348062 fumarylacetoacetate hydrolase domain containing 1
isoform 1 [Homo sapiens]
Length = 248
Score = 38.9 bits (89), Expect = 0.001
Identities = 19/30 (63%), Positives = 21/30 (70%)
Query: 61 RLGLTLSSRLECCGAITAQGSFDLMGSGNP 90
R GLTLS +LEC AITA S +L GS NP
Sbjct: 213 RQGLTLSPKLECSSAITAHCSLELPGSSNP 242
>gi|122939204 parkin co-regulated gene protein isoform 1 [Homo
sapiens]
Length = 296
Score = 38.1 bits (87), Expect = 0.002
Identities = 18/32 (56%), Positives = 23/32 (71%)
Query: 69 RLECCGAITAQGSFDLMGSGNPFTSVDQIAEI 100
RLEC GAI A+ + D +GS +P TS Q+AEI
Sbjct: 211 RLECSGAIMARCNLDHLGSSDPPTSASQVAEI 242
>gi|34147403 intraflagellar transport 81-like isoform 2 [Homo
sapiens]
Length = 431
Score = 37.0 bits (84), Expect = 0.004
Identities = 20/34 (58%), Positives = 22/34 (64%)
Query: 60 ERLGLTLSSRLECCGAITAQGSFDLMGSGNPFTS 93
ER LTLS RLEC G I A S L+GS +P TS
Sbjct: 396 ERQDLTLSPRLECGGVIMAYCSLKLLGSSDPPTS 429
>gi|148839316 NIMA-related kinase 4 [Homo sapiens]
Length = 841
Score = 36.6 bits (83), Expect = 0.005
Identities = 18/43 (41%), Positives = 25/43 (58%)
Query: 64 LTLSSRLECCGAITAQGSFDLMGSGNPFTSVDQIAEITNVGNH 106
L LS +LEC G I A + L+GS + S ++A IT V +H
Sbjct: 458 LALSPKLECSGTILAHSNLRLLGSSDSPASASRVAGITGVCHH 500
>gi|219881538 hypothetical protein LOC199870 isoform 2 [Homo
sapiens]
Length = 312
Score = 35.8 bits (81), Expect = 0.009
Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
Query: 45 KESKIPKLILKCMYRERLGLTLSSRLECCGAITAQGSFDLMGSGNPFTSVDQIAEITNVG 104
KE +I ++KC Y RLEC G I+A + L GS + S ++A IT +
Sbjct: 27 KECRIAHPVVKCTYCRTE--YQQERLECNGTISAHCNLHLPGSSDSPASSSRVAGITGIK 84
Query: 105 NHTLLISC 112
+T+ C
Sbjct: 85 TNTICKKC 92
>gi|219881536 hypothetical protein LOC199870 isoform 1 [Homo
sapiens]
Length = 341
Score = 35.8 bits (81), Expect = 0.009
Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
Query: 45 KESKIPKLILKCMYRERLGLTLSSRLECCGAITAQGSFDLMGSGNPFTSVDQIAEITNVG 104
KE +I ++KC Y RLEC G I+A + L GS + S ++A IT +
Sbjct: 27 KECRIAHPVVKCTYCRTE--YQQERLECNGTISAHCNLHLPGSSDSPASSSRVAGITGIK 84
Query: 105 NHTLLISC 112
+T+ C
Sbjct: 85 TNTICKKC 92
>gi|187608508 centromere protein L isoform 1 [Homo sapiens]
Length = 390
Score = 35.4 bits (80), Expect = 0.012
Identities = 19/49 (38%), Positives = 26/49 (53%)
Query: 63 GLTLSSRLECCGAITAQGSFDLMGSGNPFTSVDQIAEITNVGNHTLLIS 111
GL LS RLE G I + L+GS +P T Q+A +HT ++S
Sbjct: 141 GLILSPRLEYSGTILVDCNLCLLGSSDPSTLAFQVAGTAGACHHTRIVS 189
>gi|61969666 arginine-fifty homeobox [Homo sapiens]
Length = 315
Score = 35.4 bits (80), Expect = 0.012
Identities = 17/39 (43%), Positives = 25/39 (64%)
Query: 65 TLSSRLECCGAITAQGSFDLMGSGNPFTSVDQIAEITNV 103
TL S+LEC G ++A S +L GS +P TS ++A T +
Sbjct: 37 TLLSKLECSGTVSAYCSLNLPGSTDPPTSASRVAATTAI 75
>gi|78000165 sorbin and SH3 domain containing 1 isoform 4 [Homo
sapiens]
Length = 1151
Score = 34.7 bits (78), Expect = 0.020
Identities = 16/33 (48%), Positives = 20/33 (60%)
Query: 66 LSSRLECCGAITAQGSFDLMGSGNPFTSVDQIA 98
+S RLEC G + A S L+ S NP TS Q+A
Sbjct: 440 MSPRLECSGTVIAHCSLKLLDSSNPPTSASQVA 472
>gi|58533176 zinc finger, matrin type 1 isoform 1 [Homo sapiens]
Length = 638
Score = 32.0 bits (71), Expect = 0.13
Identities = 22/54 (40%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
Query: 68 SRLECCGAITAQGSFDLMGSGNPFTSVDQIAEIT----NVGNHTLLISCIFCRV 117
+RLEC GAI+A S L GS + S QIA T N L + FC+V
Sbjct: 7 TRLECSGAISAHCSLHLPGSSDSPASASQIAGTTDAIWNEQEKAELFTDKFCQV 60
>gi|222446642 solute carrier family 36, member 3 isoform 1 [Homo
sapiens]
Length = 511
Score = 31.6 bits (70), Expect = 0.17
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Query: 61 RLGLTLSSRLECCGAITAQGSFDLMGSGNPFTSVDQIAEITNVGNHTLLISCIFCRVG 118
R L LS RLEC G I+A + L GS N S Q + + + +T+ + ++G
Sbjct: 135 RWNLALSPRLECSGKISAHCNPHLQGSSN---SPAQASRVAGIYRYTVSFLLVITQLG 189
>gi|51243063 MAD2L1 binding protein isoform 1 [Homo sapiens]
Length = 306
Score = 31.2 bits (69), Expect = 0.22
Identities = 22/49 (44%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Query: 57 MYRERLG--LTLSSRLECCGAITAQGSFDLMGSGNPFTSVDQIAEITNV 103
M R LG LTLS RLE G +A +F L GS + S Q+AEI ++
Sbjct: 1 MARVPLGRSLTLSPRLEHNGMTSAHHNFRLPGSRDSPASASQVAEIIDL 49
>gi|148236061 hypothetical protein LOC285501 [Homo sapiens]
Length = 109
Score = 31.2 bits (69), Expect = 0.22
Identities = 15/33 (45%), Positives = 20/33 (60%)
Query: 69 RLECCGAITAQGSFDLMGSGNPFTSVDQIAEIT 101
+LEC G I A + L+GS +P TS Q+A T
Sbjct: 21 KLECSGPILAHCNLCLLGSRHPSTSASQVAGTT 53
>gi|118442834 RPGRIP1-like isoform a [Homo sapiens]
Length = 1315
Score = 30.4 bits (67), Expect = 0.38
Identities = 18/44 (40%), Positives = 23/44 (52%)
Query: 64 LTLSSRLECCGAITAQGSFDLMGSGNPFTSVDQIAEITNVGNHT 107
L LS L C AI+A +F L GS + S Q+ IT +HT
Sbjct: 1100 LALSPGLGCSSAISAHCNFRLPGSSDFPASASQVDGITGACHHT 1143
>gi|239744440 PREDICTED: hypothetical protein XP_002343124 [Homo
sapiens]
Length = 261
Score = 30.0 bits (66), Expect = 0.50
Identities = 16/47 (34%), Positives = 27/47 (57%)
Query: 57 MYRERLGLTLSSRLECCGAITAQGSFDLMGSGNPFTSVDQIAEITNV 103
M ++ GL L RLE G I+A+ + L+GS + S Q+A + ++
Sbjct: 1 MCKDTEGLALYPRLEFSGTISARCNLRLLGSSDSPASASQVAGLQSM 47
>gi|210147507 lipopolysaccharide-induced TNF-alpha factor isoform 2
[Homo sapiens]
Length = 152
Score = 30.0 bits (66), Expect = 0.50
Identities = 14/23 (60%), Positives = 16/23 (69%)
Query: 71 ECCGAITAQGSFDLMGSGNPFTS 93
EC G I A SFDL+GS NP +S
Sbjct: 128 ECSGTIVALRSFDLLGSCNPPSS 150
>gi|226342962 synaptotagmin XIV isoform 2 [Homo sapiens]
Length = 600
Score = 28.9 bits (63), Expect = 1.1
Identities = 15/42 (35%), Positives = 22/42 (52%)
Query: 60 ERLGLTLSSRLECCGAITAQGSFDLMGSGNPFTSVDQIAEIT 101
E++G +RLE G I A +F L+GS + S Q+ T
Sbjct: 24 EKIGYFSVARLEYSGTILAHCNFRLLGSNDSSASASQVTGTT 65
>gi|226342955 synaptotagmin XIV isoform 1 [Homo sapiens]
Length = 619
Score = 28.9 bits (63), Expect = 1.1
Identities = 15/42 (35%), Positives = 22/42 (52%)
Query: 60 ERLGLTLSSRLECCGAITAQGSFDLMGSGNPFTSVDQIAEIT 101
E++G +RLE G I A +F L+GS + S Q+ T
Sbjct: 24 EKIGYFSVARLEYSGTILAHCNFRLLGSNDSSASASQVTGTT 65
>gi|58294160 breast carcinoma amplified sequence 4 isoform a [Homo
sapiens]
Length = 211
Score = 28.9 bits (63), Expect = 1.1
Identities = 16/41 (39%), Positives = 21/41 (51%)
Query: 63 GLTLSSRLECCGAITAQGSFDLMGSGNPFTSVDQIAEITNV 103
GL +EC G I A+ + L GS + S Q+A IT V
Sbjct: 157 GLPSFRNVECSGTIPARCNLRLPGSSDSPASASQVAGITEV 197
>gi|194363758 signal recognition particle 9kDa isoform 1 [Homo
sapiens]
Length = 82
Score = 28.9 bits (63), Expect = 1.1
Identities = 14/30 (46%), Positives = 16/30 (53%)
Query: 64 LTLSSRLECCGAITAQGSFDLMGSGNPFTS 93
L L RL+C G I A DL+GS P S
Sbjct: 51 LALLLRLQCSGMIIAHCILDLLGSSGPLAS 80
>gi|6005810 mitogen-activated protein kinase kinase kinase kinase 1
isoform 2 [Homo sapiens]
Length = 833
Score = 28.5 bits (62), Expect = 1.5
Identities = 15/37 (40%), Positives = 20/37 (54%)
Query: 67 SSRLECCGAITAQGSFDLMGSGNPFTSVDQIAEITNV 103
S RLEC G I+ + L GS N S ++A IT +
Sbjct: 797 SPRLECSGTISPHCNLLLPGSSNSPASASRVAGITGL 833
>gi|9910146 chromosome 21 open reading frame 7 [Homo sapiens]
Length = 242
Score = 28.1 bits (61), Expect = 1.9
Identities = 14/23 (60%), Positives = 15/23 (65%)
Query: 64 LTLSSRLECCGAITAQGSFDLMG 86
L LS RLEC G I A S DL+G
Sbjct: 21 LALSRRLECSGGIMAHYSPDLLG 43
>gi|78482627 ring finger protein 30 isoform 1 [Homo sapiens]
Length = 400
Score = 28.1 bits (61), Expect = 1.9
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 59 RERLGLTLSSRLECCGAITAQGSFDLMGSGNP 90
+++ LTL RLEC G T S DL S +P
Sbjct: 170 QKKQDLTLLPRLECSGTNTTYCSLDLPSSSDP 201
>gi|239735607 nucleoredoxin-like 2 isoform 2 [Homo sapiens]
Length = 135
Score = 27.3 bits (59), Expect = 3.2
Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 58 YRERLGLTLSSRLECCGAITAQGSFDLMGSGN 89
YR+R L L RLEC G I A + L+GS +
Sbjct: 99 YRQR-SLALLPRLECSGVILAHCNLCLLGSSD 129
>gi|239755619 PREDICTED: hypothetical protein [Homo sapiens]
Length = 261
Score = 27.3 bits (59), Expect = 3.2
Identities = 15/47 (31%), Positives = 26/47 (55%)
Query: 57 MYRERLGLTLSSRLECCGAITAQGSFDLMGSGNPFTSVDQIAEITNV 103
M ++ GL RLE G I+A+ + L+GS + S Q+A + ++
Sbjct: 1 MCKDTEGLAPYPRLEFSGTISARCNLRLLGSSDSPASASQVAGLQSM 47
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.327 0.139 0.461
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,830,876
Number of Sequences: 37866
Number of extensions: 187060
Number of successful extensions: 464
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 418
Number of HSP's gapped (non-prelim): 48
length of query: 127
length of database: 18,247,518
effective HSP length: 90
effective length of query: 37
effective length of database: 14,839,578
effective search space: 549064386
effective search space used: 549064386
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.