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Search of human proteins with 239746542
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239746542 PREDICTED: hypothetical protein XP_002343773 [Homo
sapiens]
(302 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239746542 PREDICTED: hypothetical protein XP_002343773 [Homo ... 621 e-178
gi|239752057 PREDICTED: hypothetical protein XP_002348077 [Homo ... 545 e-155
gi|90903240 glutathione peroxidase 4 isoform C precursor [Homo s... 37 0.021
gi|242117971 RNA binding motif protein, X-linked-like 1 [Homo sa... 37 0.028
gi|21361809 RNA binding motif protein, X-linked-like 1 [Homo sap... 37 0.028
gi|116284396 myosin, heavy chain 14 isoform 1 [Homo sapiens] 37 0.028
gi|116284394 myosin, heavy chain 14 isoform 2 [Homo sapiens] 37 0.028
gi|224831241 myosin, heavy chain 14 isoform 3 [Homo sapiens] 37 0.028
gi|239754611 PREDICTED: hypothetical protein [Homo sapiens] 37 0.028
gi|239756433 PREDICTED: hypothetical protein [Homo sapiens] 36 0.048
gi|169204521 PREDICTED: hypothetical protein [Homo sapiens] 36 0.048
gi|239750970 PREDICTED: hypothetical protein XP_002347634 [Homo ... 36 0.048
gi|169205149 PREDICTED: hypothetical protein [Homo sapiens] 36 0.048
gi|239749157 PREDICTED: hypothetical protein XP_002346930 [Homo ... 36 0.048
gi|239745376 PREDICTED: hypothetical protein XP_002343484 [Homo ... 36 0.048
gi|169204400 PREDICTED: hypothetical protein [Homo sapiens] 36 0.048
gi|239743220 PREDICTED: hypothetical protein XP_002342806 [Homo ... 36 0.048
gi|239742514 PREDICTED: similar to Putative POM121-like protein ... 36 0.048
gi|239508892 PREDICTED: hypothetical protein [Homo sapiens] 36 0.048
gi|158854042 hypothetical protein LOC222183 [Homo sapiens] 35 0.062
gi|81295809 pericentrin [Homo sapiens] 35 0.081
gi|210032509 hypothetical protein LOC100130302 [Homo sapiens] 35 0.11
gi|239741968 PREDICTED: hypothetical protein [Homo sapiens] 34 0.14
gi|50409691 SRp25 nuclear protein isoform 4 [Homo sapiens] 34 0.14
gi|50409738 SRp25 nuclear protein isoform 3 [Homo sapiens] 34 0.14
gi|50409707 SRp25 nuclear protein isoform 2 [Homo sapiens] 34 0.14
gi|50409756 SRp25 nuclear protein isoform 1 [Homo sapiens] 34 0.14
gi|239747100 PREDICTED: hypothetical protein XP_002344493 [Homo ... 34 0.18
gi|239756311 PREDICTED: hypothetical protein [Homo sapiens] 33 0.24
gi|14110395 X-box binding protein 1 isoform XBP1(U) [Homo sapiens] 33 0.31
>gi|239746542 PREDICTED: hypothetical protein XP_002343773 [Homo
sapiens]
Length = 302
Score = 621 bits (1602), Expect = e-178
Identities = 302/302 (100%), Positives = 302/302 (100%)
Query: 1 MLLKRSSRRTRTAGLARASGAPSGPAAAAAAPAPSLAAPSLLEVDVAQAGRVGRQRGRAQ 60
MLLKRSSRRTRTAGLARASGAPSGPAAAAAAPAPSLAAPSLLEVDVAQAGRVGRQRGRAQ
Sbjct: 1 MLLKRSSRRTRTAGLARASGAPSGPAAAAAAPAPSLAAPSLLEVDVAQAGRVGRQRGRAQ 60
Query: 61 HGVHGRRAPLTARREAARACARARRRQQRRVEARLELAVSRRLHVRAEDVLQLRVLHLRH 120
HGVHGRRAPLTARREAARACARARRRQQRRVEARLELAVSRRLHVRAEDVLQLRVLHLRH
Sbjct: 61 HGVHGRRAPLTARREAARACARARRRQQRRVEARLELAVSRRLHVRAEDVLQLRVLHLRH 120
Query: 121 LHQAQVADPKFSEIQNFPGTLERTAERWDGFIVQDQLDVLRAWRSPLHEDLSPLAAQVTV 180
LHQAQVADPKFSEIQNFPGTLERTAERWDGFIVQDQLDVLRAWRSPLHEDLSPLAAQVTV
Sbjct: 121 LHQAQVADPKFSEIQNFPGTLERTAERWDGFIVQDQLDVLRAWRSPLHEDLSPLAAQVTV 180
Query: 181 WSCWRRLLRAVAAPPDTWPRGLHRSARERPTGVCSWLGCGPIRLFGSQALAHRRPEEARR 240
WSCWRRLLRAVAAPPDTWPRGLHRSARERPTGVCSWLGCGPIRLFGSQALAHRRPEEARR
Sbjct: 181 WSCWRRLLRAVAAPPDTWPRGLHRSARERPTGVCSWLGCGPIRLFGSQALAHRRPEEARR 240
Query: 241 PGASSPSLSLQPRCVQARGPPRLLHWHCWSWMVLGPHRERDSCPVTEGCGDPHPAGLTLG 300
PGASSPSLSLQPRCVQARGPPRLLHWHCWSWMVLGPHRERDSCPVTEGCGDPHPAGLTLG
Sbjct: 241 PGASSPSLSLQPRCVQARGPPRLLHWHCWSWMVLGPHRERDSCPVTEGCGDPHPAGLTLG 300
Query: 301 SA 302
SA
Sbjct: 301 SA 302
>gi|239752057 PREDICTED: hypothetical protein XP_002348077 [Homo
sapiens]
Length = 344
Score = 545 bits (1403), Expect = e-155
Identities = 276/311 (88%), Positives = 279/311 (89%), Gaps = 18/311 (5%)
Query: 1 MLLKRSSRRTRTAGLARASGAPSGPAAAAAAPAPSLAAPS-----------LLEVDVAQA 49
MLLKRSSRRTRTAGLARASGAPSGPAAAAAAPAPSLAAPS LLEVDVAQA
Sbjct: 1 MLLKRSSRRTRTAGLARASGAPSGPAAAAAAPAPSLAAPSARALAPSPPPDLLEVDVAQA 60
Query: 50 GRVGRQRGRAQHGVHGRRAPLTARREAARACARARRRQQRRVEARLELAVSRRLHVRAED 109
GRVGRQRGRAQHGVHGRRAPLTARREAARACARARRRQQRRVEARLELAVSRRLHVRAED
Sbjct: 61 GRVGRQRGRAQHGVHGRRAPLTARREAARACARARRRQQRRVEARLELAVSRRLHVRAED 120
Query: 110 VLQLRVLHLRHLHQAQVADPKFSEIQNFPGTLERTAERWDGFIVQDQLDVLRAWRSPLHE 169
VLQLRVLHLRHLHQAQVADPKFSEIQNFPGTLERTAERWDGFIVQDQLDVLRAWRSPLHE
Sbjct: 121 VLQLRVLHLRHLHQAQVADPKFSEIQNFPGTLERTAERWDGFIVQDQLDVLRAWRSPLHE 180
Query: 170 DLSPLAAQVTVWSCWRRLLRAVAAPPDTWPRGLHRSARERPTGVCSWLGCGPIRLFGSQA 229
DLSPLAAQVTVWSCWRRLLRAVAAPPDTWPRGLHRSARERPTGVCSWLGCGPIRLFGSQA
Sbjct: 181 DLSPLAAQVTVWSCWRRLLRAVAAPPDTWPRGLHRSARERPTGVCSWLGCGPIRLFGSQA 240
Query: 230 LAHRRPEEARRPGASSPSLSLQPRCVQARGPPRLLHWHCWSWMVLGPHRERDSC-PVTEG 288
LAHRRPEEARRPGASSPSLSLQPRCVQARGPPRLLHWHCW W + +C P +
Sbjct: 241 LAHRRPEEARRPGASSPSLSLQPRCVQARGPPRLLHWHCWVWAA------KPTCPPASSA 294
Query: 289 CGDPHPAGLTL 299
P G TL
Sbjct: 295 AARPAVGGCTL 305
>gi|90903240 glutathione peroxidase 4 isoform C precursor [Homo
sapiens]
Length = 234
Score = 37.0 bits (84), Expect = 0.021
Identities = 21/44 (47%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 47 AQAGRVGRQRGRAQHGVHGRRAPLTARREAARACARARRRQQRR 90
A AG GR+R R Q GRR P RR A AC R R R++R+
Sbjct: 4 AGAGSPGRRRQRCQS--RGRRRPRAPRRRKAPACRRRRARRRRK 45
>gi|242117971 RNA binding motif protein, X-linked-like 1 [Homo
sapiens]
Length = 390
Score = 36.6 bits (83), Expect = 0.028
Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 24 GPAAAAAAPAPSLAAPS-LLEVDVAQAGRVGRQRGRAQHGVHGRRAPLTARRE 75
GP + P+P +APS L+ GR RGR +G RR PL +RR+
Sbjct: 152 GPPPRSGGPSPKRSAPSGLVRSSSGMGGRAPLSRGRDSYGGPPRREPLPSRRD 204
>gi|21361809 RNA binding motif protein, X-linked-like 1 [Homo
sapiens]
Length = 390
Score = 36.6 bits (83), Expect = 0.028
Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 24 GPAAAAAAPAPSLAAPS-LLEVDVAQAGRVGRQRGRAQHGVHGRRAPLTARRE 75
GP + P+P +APS L+ GR RGR +G RR PL +RR+
Sbjct: 152 GPPPRSGGPSPKRSAPSGLVRSSSGMGGRAPLSRGRDSYGGPPRREPLPSRRD 204
>gi|116284396 myosin, heavy chain 14 isoform 1 [Homo sapiens]
Length = 2003
Score = 36.6 bits (83), Expect = 0.028
Identities = 33/121 (27%), Positives = 51/121 (42%), Gaps = 5/121 (4%)
Query: 42 LEVDVAQAGRVGRQRGRAQHGVHGRRAPLTARREAARACARARRRQQRRVEARLELAVSR 101
LE + A R GR+ AQ + R A A ARRR R EA +++
Sbjct: 1377 LEEEAAARERAGRELQTAQAQLSEWRRRQEEEAGALEAGEEARRRAAREAEA-----LTQ 1431
Query: 102 RLHVRAEDVLQLRVLHLRHLHQAQVADPKFSEIQNFPGTLERTAERWDGFIVQDQLDVLR 161
RL + E V +L R + A + + TLE+ ++D + +++ VLR
Sbjct: 1432 RLAEKTETVDRLERGRRRLQQELDDATMDLEQQRQLVSTLEKKQRKFDQLLAEEKAAVLR 1491
Query: 162 A 162
A
Sbjct: 1492 A 1492
>gi|116284394 myosin, heavy chain 14 isoform 2 [Homo sapiens]
Length = 1995
Score = 36.6 bits (83), Expect = 0.028
Identities = 33/121 (27%), Positives = 51/121 (42%), Gaps = 5/121 (4%)
Query: 42 LEVDVAQAGRVGRQRGRAQHGVHGRRAPLTARREAARACARARRRQQRRVEARLELAVSR 101
LE + A R GR+ AQ + R A A ARRR R EA +++
Sbjct: 1369 LEEEAAARERAGRELQTAQAQLSEWRRRQEEEAGALEAGEEARRRAAREAEA-----LTQ 1423
Query: 102 RLHVRAEDVLQLRVLHLRHLHQAQVADPKFSEIQNFPGTLERTAERWDGFIVQDQLDVLR 161
RL + E V +L R + A + + TLE+ ++D + +++ VLR
Sbjct: 1424 RLAEKTETVDRLERGRRRLQQELDDATMDLEQQRQLVSTLEKKQRKFDQLLAEEKAAVLR 1483
Query: 162 A 162
A
Sbjct: 1484 A 1484
>gi|224831241 myosin, heavy chain 14 isoform 3 [Homo sapiens]
Length = 2036
Score = 36.6 bits (83), Expect = 0.028
Identities = 33/121 (27%), Positives = 51/121 (42%), Gaps = 5/121 (4%)
Query: 42 LEVDVAQAGRVGRQRGRAQHGVHGRRAPLTARREAARACARARRRQQRRVEARLELAVSR 101
LE + A R GR+ AQ + R A A ARRR R EA +++
Sbjct: 1410 LEEEAAARERAGRELQTAQAQLSEWRRRQEEEAGALEAGEEARRRAAREAEA-----LTQ 1464
Query: 102 RLHVRAEDVLQLRVLHLRHLHQAQVADPKFSEIQNFPGTLERTAERWDGFIVQDQLDVLR 161
RL + E V +L R + A + + TLE+ ++D + +++ VLR
Sbjct: 1465 RLAEKTETVDRLERGRRRLQQELDDATMDLEQQRQLVSTLEKKQRKFDQLLAEEKAAVLR 1524
Query: 162 A 162
A
Sbjct: 1525 A 1525
>gi|239754611 PREDICTED: hypothetical protein [Homo sapiens]
Length = 178
Score = 36.6 bits (83), Expect = 0.028
Identities = 31/87 (35%), Positives = 40/87 (45%), Gaps = 10/87 (11%)
Query: 4 KRSSRRTRTAGLARAS-GAPSGPAAAAAAPAPSLAAPSLLEVDV-AQAGRVGR----QRG 57
+R+SRR R A +A AS G PAA P P+ A P + A +GR R QRG
Sbjct: 63 RRTSRRLRAAIVAAASPGLHGRPAACRGHPRPTPARPPTGAPEAPALSGRAARLHGAQRG 122
Query: 58 ----RAQHGVHGRRAPLTARREAARAC 80
+A+HG R P + E C
Sbjct: 123 APAGQARHGAGNRHPPRQGQEEDGGGC 149
>gi|239756433 PREDICTED: hypothetical protein [Homo sapiens]
Length = 513
Score = 35.8 bits (81), Expect = 0.048
Identities = 43/120 (35%), Positives = 50/120 (41%), Gaps = 31/120 (25%)
Query: 14 GLARASGAPSGPAAAAAAPAPSL-----AAPSLLEVDVAQAGRVGRQR----GRAQHG-- 62
G A A +GP AA A AP L A + + D AQA G QR GRA+HG
Sbjct: 178 GRAEDLQAGAGPRGAAEAQAPQLLGVGSAGLAAVVGDEAQALAAGSQRPQGLGRARHGGL 237
Query: 63 -------------VH---GRRAPLTARREAARACARARRRQQRRVEA----RLELAVSRR 102
VH R PL A+ AA A RR+ RR A R LA +RR
Sbjct: 238 PAPQHAVAVEQQRVHVGQQRLCPLGAQPHAAGVVATGLRRRHRRPPAAAARRPLLAAARR 297
>gi|169204521 PREDICTED: hypothetical protein [Homo sapiens]
Length = 430
Score = 35.8 bits (81), Expect = 0.048
Identities = 30/81 (37%), Positives = 38/81 (46%), Gaps = 10/81 (12%)
Query: 17 RASGAPSGPAAAAAAPAPSLAAPSLLEVDVAQAGRVGRQ-RGRAQHGVH---GRRAPLTA 72
R +G P GPAAA A + A + ++AG G + RG A HG H G R P
Sbjct: 277 RGTGGPLGPAAAGAGTEAAAA-----HEEGSKAGDSGAEPRGLAPHGPHPSCGERRP-GG 330
Query: 73 RREAARACARARRRQQRRVEA 93
R + R R R + RVEA
Sbjct: 331 RWQQRRRSHEGRARGRHRVEA 351
>gi|239750970 PREDICTED: hypothetical protein XP_002347634 [Homo
sapiens]
Length = 513
Score = 35.8 bits (81), Expect = 0.048
Identities = 43/120 (35%), Positives = 50/120 (41%), Gaps = 31/120 (25%)
Query: 14 GLARASGAPSGPAAAAAAPAPSL-----AAPSLLEVDVAQAGRVGRQR----GRAQHG-- 62
G A A +GP AA A AP L A + + D AQA G QR GRA+HG
Sbjct: 178 GRAEDLQAGAGPRGAAEAQAPQLLGVGSAGLAAVVGDEAQALAAGSQRPQGLGRARHGGL 237
Query: 63 -------------VH---GRRAPLTARREAARACARARRRQQRRVEA----RLELAVSRR 102
VH R PL A+ AA A RR+ RR A R LA +RR
Sbjct: 238 PAPQHAVAVEQQRVHVGQQRLCPLGAQPHAAGVVATGLRRRHRRPPAAAARRPLLAAARR 297
>gi|169205149 PREDICTED: hypothetical protein [Homo sapiens]
Length = 430
Score = 35.8 bits (81), Expect = 0.048
Identities = 30/81 (37%), Positives = 38/81 (46%), Gaps = 10/81 (12%)
Query: 17 RASGAPSGPAAAAAAPAPSLAAPSLLEVDVAQAGRVGRQ-RGRAQHGVH---GRRAPLTA 72
R +G P GPAAA A + A + ++AG G + RG A HG H G R P
Sbjct: 277 RGTGGPLGPAAAGAGTEAAAA-----HEEGSKAGDSGAEPRGLAPHGPHPSCGERRP-GG 330
Query: 73 RREAARACARARRRQQRRVEA 93
R + R R R + RVEA
Sbjct: 331 RWQQRRRSHEGRARGRHRVEA 351
>gi|239749157 PREDICTED: hypothetical protein XP_002346930 [Homo
sapiens]
Length = 178
Score = 35.8 bits (81), Expect = 0.048
Identities = 31/86 (36%), Positives = 39/86 (45%), Gaps = 10/86 (11%)
Query: 5 RSSRRTRTAGLARAS-GAPSGPAAAAAAPAPSLAAPSLLEVDV-AQAGRVGR----QRG- 57
R+SRR R A +A AS G PAA P P+ A P + A +GR R QRG
Sbjct: 64 RTSRRLRAAIVAAASPGLHGRPAACRGHPRPTPARPPTGAPEAPALSGRAARLHGAQRGA 123
Query: 58 ---RAQHGVHGRRAPLTARREAARAC 80
+A+HG R P + E C
Sbjct: 124 PAGQARHGAGNRHPPRQGQEEDGGGC 149
>gi|239745376 PREDICTED: hypothetical protein XP_002343484 [Homo
sapiens]
Length = 513
Score = 35.8 bits (81), Expect = 0.048
Identities = 43/120 (35%), Positives = 50/120 (41%), Gaps = 31/120 (25%)
Query: 14 GLARASGAPSGPAAAAAAPAPSL-----AAPSLLEVDVAQAGRVGRQR----GRAQHG-- 62
G A A +GP AA A AP L A + + D AQA G QR GRA+HG
Sbjct: 178 GRAEDLQAGAGPRGAAEAQAPQLLGVGSAGLAAVVGDEAQALAAGSQRPQGLGRARHGGL 237
Query: 63 -------------VH---GRRAPLTARREAARACARARRRQQRRVEA----RLELAVSRR 102
VH R PL A+ AA A RR+ RR A R LA +RR
Sbjct: 238 PAPQHAVAVEQQRVHVGQQRLCPLGAQPHAAGVVATGLRRRHRRPPAAAARRPLLAAARR 297
>gi|169204400 PREDICTED: hypothetical protein [Homo sapiens]
Length = 430
Score = 35.8 bits (81), Expect = 0.048
Identities = 30/81 (37%), Positives = 38/81 (46%), Gaps = 10/81 (12%)
Query: 17 RASGAPSGPAAAAAAPAPSLAAPSLLEVDVAQAGRVGRQ-RGRAQHGVH---GRRAPLTA 72
R +G P GPAAA A + A + ++AG G + RG A HG H G R P
Sbjct: 277 RGTGGPLGPAAAGAGTEAAAA-----HEEGSKAGDSGAEPRGLAPHGPHPSCGERRP-GG 330
Query: 73 RREAARACARARRRQQRRVEA 93
R + R R R + RVEA
Sbjct: 331 RWQQRRRSHEGRARGRHRVEA 351
>gi|239743220 PREDICTED: hypothetical protein XP_002342806 [Homo
sapiens]
Length = 178
Score = 35.8 bits (81), Expect = 0.048
Identities = 31/86 (36%), Positives = 39/86 (45%), Gaps = 10/86 (11%)
Query: 5 RSSRRTRTAGLARAS-GAPSGPAAAAAAPAPSLAAPSLLEVDV-AQAGRVGR----QRG- 57
R+SRR R A +A AS G PAA P P+ A P + A +GR R QRG
Sbjct: 64 RTSRRLRAAIVAAASPGLHGRPAACRGHPRPTPARPPTGAPEAPALSGRAARLHGAQRGA 123
Query: 58 ---RAQHGVHGRRAPLTARREAARAC 80
+A+HG R P + E C
Sbjct: 124 PAGQARHGAGNRHPPRQGQEEDGGGC 149
>gi|239742514 PREDICTED: similar to Putative POM121-like protein
1-like [Homo sapiens]
Length = 896
Score = 35.8 bits (81), Expect = 0.048
Identities = 32/106 (30%), Positives = 42/106 (39%), Gaps = 12/106 (11%)
Query: 10 TRTAGLARASGAPSGPAAAAAAPAPSLAAPSLLEVDVAQAGRVGRQRGRAQHGVHGRRAP 69
+R AG+ R S PAAAAAAP PS P+ G G A
Sbjct: 586 SRDAGMRRTRPGTSAPAAAAAAPPPSTLNPT-----------SGSLLNAVDEGPSHFLAS 634
Query: 70 LTARREAARACARARRRQQ-RRVEARLELAVSRRLHVRAEDVLQLR 114
TA A R+ R +R Q R + L+ S H E + +L+
Sbjct: 635 ATAAARARRSQVRYNQRSQTSRTRSCLKRNASSSSHSSTEGLQELK 680
Score = 30.0 bits (66), Expect = 2.6
Identities = 32/106 (30%), Positives = 42/106 (39%), Gaps = 15/106 (14%)
Query: 10 TRTAGLARASGAPSGPAAAAAAPAPSLAAPSLLEVDVAQAGRVGRQRGRAQHGVHGRRAP 69
+R AG+ R AP AAAAAAP PS P+ G G A
Sbjct: 316 SRDAGMRRTRSAP---AAAAAAPPPSTLNPT-----------SGSLLNAVDGGPSHFLAS 361
Query: 70 LTARREAARACARARRRQQ-RRVEARLELAVSRRLHVRAEDVLQLR 114
TA A R+ R +R Q R + L+ S H E + +L+
Sbjct: 362 ATAAARAQRSEVRYNQRSQISRTRSCLKRNASSSSHSSTEGLPELK 407
>gi|239508892 PREDICTED: hypothetical protein [Homo sapiens]
Length = 178
Score = 35.8 bits (81), Expect = 0.048
Identities = 31/86 (36%), Positives = 39/86 (45%), Gaps = 10/86 (11%)
Query: 5 RSSRRTRTAGLARAS-GAPSGPAAAAAAPAPSLAAPSLLEVDV-AQAGRVGR----QRG- 57
R+SRR R A +A AS G PAA P P+ A P + A +GR R QRG
Sbjct: 64 RTSRRLRAAIVAAASPGLHGRPAACRGHPRPTPARPPTGAPEAPALSGRAARLHGAQRGA 123
Query: 58 ---RAQHGVHGRRAPLTARREAARAC 80
+A+HG R P + E C
Sbjct: 124 PAGQARHGAGNRHPPRQGQEEDGGGC 149
>gi|158854042 hypothetical protein LOC222183 [Homo sapiens]
Length = 653
Score = 35.4 bits (80), Expect = 0.062
Identities = 28/73 (38%), Positives = 36/73 (49%), Gaps = 13/73 (17%)
Query: 18 ASGAPSGPAAAAAAPAPSLAAPSLLEVDVAQAGRVGRQRGRAQHGVHGRRAPLTARREAA 77
A+ AP+ PA +P+P +APS GR GR G A GRR RR +
Sbjct: 350 AAAAPTPPARGKESPSPR-SAPS-------SQGRGGRAAGGA-----GRRRRRRRRRRRS 396
Query: 78 RACARARRRQQRR 90
R+ A A RR+ RR
Sbjct: 397 RSSASAPRRRGRR 409
Score = 34.3 bits (77), Expect = 0.14
Identities = 29/94 (30%), Positives = 40/94 (42%), Gaps = 3/94 (3%)
Query: 11 RTAGLARASGAPSGPAAAAAAPAPSLAAPSLLEVDVAQAGRVGRQRGRAQHGVHGRRAPL 70
R G + SGA G +A +P ++PS D A A R + R AP
Sbjct: 313 RNGGSGQRSGAHGGRPGSAHSPPDKPSSPSPRVRDKAAAA-APTPPARGKESPSPRSAPS 371
Query: 71 TARR--EAARACARARRRQQRRVEARLELAVSRR 102
+ R AA R RRR++RR +R + RR
Sbjct: 372 SQGRGGRAAGGAGRRRRRRRRRRRSRSSASAPRR 405
>gi|81295809 pericentrin [Homo sapiens]
Length = 3336
Score = 35.0 bits (79), Expect = 0.081
Identities = 40/120 (33%), Positives = 55/120 (45%), Gaps = 21/120 (17%)
Query: 35 SLAAPSLLEVDVAQAG---------RVGRQRGRAQHGVHGRRAPLTARREAARACARARR 85
SL P + EV +QAG + G RG+A G L A EA A +R
Sbjct: 1754 SLMGPVVHEVSDSQAGSLQSELLCSQAGGPRGQALQG------ELEAALEAKEALSRLLA 1807
Query: 86 RQQRRVEARLELAVSRRLHVRAEDVLQLRVLHLRH---LHQAQVADPKFSEIQNFPGTLE 142
Q+RR LE A+ +RL AE+ +L++ L L +A+V D S IQ F L+
Sbjct: 1808 DQERRHSQALE-ALQQRLQ-GAEEAAELQLAELERNVALREAEVEDMA-SRIQEFEAALK 1864
>gi|210032509 hypothetical protein LOC100130302 [Homo sapiens]
Length = 887
Score = 34.7 bits (78), Expect = 0.11
Identities = 30/89 (33%), Positives = 37/89 (41%), Gaps = 3/89 (3%)
Query: 3 LKRSSRRTRTAGLARASGAPSGPAAAAAAPAPSLAAPSLLEVDVAQAGRVGRQRGRAQHG 62
LKR A A+ A + AAAAAAPAP+LAA + + A A + A
Sbjct: 489 LKRPFSAAAAIAAAAAAAAAAAAAAAAAAPAPALAAAAAPALAAAAAPALAAAAAPAPAP 548
Query: 63 VHGRRAPLTARREAARACARARRRQQRRV 91
AP A AA A A Q+ V
Sbjct: 549 A---AAPAVAAAPAAAASAAPSHSQKPSV 574
>gi|239741968 PREDICTED: hypothetical protein [Homo sapiens]
Length = 263
Score = 34.3 bits (77), Expect = 0.14
Identities = 40/104 (38%), Positives = 46/104 (44%), Gaps = 5/104 (4%)
Query: 2 LLKRSSRRTRTAGLARASGAPSGPAAAAAAPAPSLA--APSLLEVDVAQAGRVGRQRGRA 59
+L+R RRT AG A +GA S P A+ A A A L VA A + R RG A
Sbjct: 110 VLRRIWRRTGAAG-ASPAGARSHPGRASRRGASDRARCARGLGGPRVAAASELVR-RGLA 167
Query: 60 QHGVHGRRA-PLTARREAARACARARRRQQRRVEARLELAVSRR 102
R A P AR A A RR EAR E + SRR
Sbjct: 168 SGAARARPASPAPARLLPLAVGASAAAGDTRRTEARAEPSPSRR 211
>gi|50409691 SRp25 nuclear protein isoform 4 [Homo sapiens]
Length = 338
Score = 34.3 bits (77), Expect = 0.14
Identities = 30/87 (34%), Positives = 49/87 (56%), Gaps = 11/87 (12%)
Query: 9 RTRTAGLARASGAPSGPAAAAAAPAPSLAAPSLLEVDVAQAGRVGRQRGRAQHGVHGRRA 68
RT+ +G A PS PA+ AA P P ++P L ++ A+ G G Q GRA+ G A
Sbjct: 76 RTKGSGAA----LPSRPASRAA-PRPEASSPPL-PLEKARGGLSGPQGGRAR----GAMA 125
Query: 69 PLTAR-REAARACARARRRQQRRVEAR 94
+ +R R +R+ +R R ++R+ ++R
Sbjct: 126 HVGSRKRSRSRSRSRGRGSEKRKKKSR 152
>gi|50409738 SRp25 nuclear protein isoform 3 [Homo sapiens]
Length = 352
Score = 34.3 bits (77), Expect = 0.14
Identities = 30/87 (34%), Positives = 49/87 (56%), Gaps = 11/87 (12%)
Query: 9 RTRTAGLARASGAPSGPAAAAAAPAPSLAAPSLLEVDVAQAGRVGRQRGRAQHGVHGRRA 68
RT+ +G A PS PA+ AA P P ++P L ++ A+ G G Q GRA+ G A
Sbjct: 76 RTKGSGAA----LPSRPASRAA-PRPEASSPPL-PLEKARGGLSGPQGGRAR----GAMA 125
Query: 69 PLTAR-REAARACARARRRQQRRVEAR 94
+ +R R +R+ +R R ++R+ ++R
Sbjct: 126 HVGSRKRSRSRSRSRGRGSEKRKKKSR 152
>gi|50409707 SRp25 nuclear protein isoform 2 [Homo sapiens]
Length = 341
Score = 34.3 bits (77), Expect = 0.14
Identities = 30/87 (34%), Positives = 49/87 (56%), Gaps = 11/87 (12%)
Query: 9 RTRTAGLARASGAPSGPAAAAAAPAPSLAAPSLLEVDVAQAGRVGRQRGRAQHGVHGRRA 68
RT+ +G A PS PA+ AA P P ++P L ++ A+ G G Q GRA+ G A
Sbjct: 76 RTKGSGAA----LPSRPASRAA-PRPEASSPPL-PLEKARGGLSGPQGGRAR----GAMA 125
Query: 69 PLTAR-REAARACARARRRQQRRVEAR 94
+ +R R +R+ +R R ++R+ ++R
Sbjct: 126 HVGSRKRSRSRSRSRGRGSEKRKKKSR 152
>gi|50409756 SRp25 nuclear protein isoform 1 [Homo sapiens]
Length = 360
Score = 34.3 bits (77), Expect = 0.14
Identities = 30/87 (34%), Positives = 49/87 (56%), Gaps = 11/87 (12%)
Query: 9 RTRTAGLARASGAPSGPAAAAAAPAPSLAAPSLLEVDVAQAGRVGRQRGRAQHGVHGRRA 68
RT+ +G A PS PA+ AA P P ++P L ++ A+ G G Q GRA+ G A
Sbjct: 76 RTKGSGAA----LPSRPASRAA-PRPEASSPPL-PLEKARGGLSGPQGGRAR----GAMA 125
Query: 69 PLTAR-REAARACARARRRQQRRVEAR 94
+ +R R +R+ +R R ++R+ ++R
Sbjct: 126 HVGSRKRSRSRSRSRGRGSEKRKKKSR 152
>gi|239747100 PREDICTED: hypothetical protein XP_002344493 [Homo
sapiens]
Length = 300
Score = 33.9 bits (76), Expect = 0.18
Identities = 29/79 (36%), Positives = 36/79 (45%), Gaps = 15/79 (18%)
Query: 6 SSRRTRTAGLARA------SGAPSGPAAAAAAPAPSLAAPSLLEV---DVAQAGRVGRQR 56
+SR + +G +RA G + AAA A P LAA S + V D A G Q
Sbjct: 227 ASRTSSDSGPSRAPAARVVGGEAAATAAARARPRAPLAAGSPVPVRPQDAAARSAAGMQP 286
Query: 57 GRAQHGVHGRRAPLTARRE 75
G HGRR P+T R E
Sbjct: 287 G------HGRRPPVTCRGE 299
>gi|239756311 PREDICTED: hypothetical protein [Homo sapiens]
Length = 151
Score = 33.5 bits (75), Expect = 0.24
Identities = 32/97 (32%), Positives = 43/97 (44%), Gaps = 2/97 (2%)
Query: 31 APAPSLAAPSLLEVDVAQAGRVGRQRGRAQHGVHGRRAPLTARREAARACARARRRQQRR 90
AP+P AA L + GR GR R R G HG A L + +A A+A + +
Sbjct: 21 APSPGAAAGRRLALQQLAEGRGGRARARGLVGQHG-GAVLCPQGQARARGAQAAQAGRAH 79
Query: 91 VEARLELAVSRRLHVRAEDVLQLRVLHLRHLHQAQVA 127
V A + + +R VR Q V R + QAQ A
Sbjct: 80 VAAEVHVQCLQRAPVRRHG-SQRAVGDARAVLQAQCA 115
>gi|14110395 X-box binding protein 1 isoform XBP1(U) [Homo sapiens]
Length = 261
Score = 33.1 bits (74), Expect = 0.31
Identities = 58/237 (24%), Positives = 101/237 (42%), Gaps = 48/237 (20%)
Query: 16 ARASGAPSGPAAAAAAPAPSLAAPSLLEVDVAQAGRVGRQRGRAQH----------GVHG 65
A A+GAP+G A PA A+P + QA R+R R H +
Sbjct: 25 ASAAGAPAGQALPLMVPAQRGASPEAASGGLPQA----RKRQRLTHLSPEEKALRRKLKN 80
Query: 66 RRAPLTAR-REAARACARARR-------RQQRRVEARLELAVSRRLHVRAEDVLQLRVLH 117
R A TAR R+ AR ++ Q+ +E +L + L V +++ Q L
Sbjct: 81 RVAAQTARDRKKARMSELEQQVVDLEEENQKLLLENQLLREKTHGLVVENQELRQR--LG 138
Query: 118 LRHLHQAQVADPKFSEIQNFPGTLERTAERWDGFIVQDQLDVLRAWRSPLHEDLSP---- 173
+ L + A+ K +E++ G+ E A R ++ L ++A SPL +++SP
Sbjct: 139 MDALVAEEEAEAKGNEVRPVAGSAESAALR-----LRAPLQQVQAQLSPL-QNISPWILA 192
Query: 174 -----LAAQVTVWSCWRRLLRAVA--APPDTWP--RGLHRSARE-----RPTGVCSW 216
+ + ++ W+ W ++ + A P + P R RS ++ +P +C W
Sbjct: 193 VLTLQIQSLISCWAFWTTWTQSCSSNALPQSLPAWRSSQRSTQKDPVPYQPPFLCQW 249
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.322 0.134 0.434
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,645,115
Number of Sequences: 37866
Number of extensions: 726445
Number of successful extensions: 4755
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 177
Number of HSP's that attempted gapping in prelim test: 4450
Number of HSP's gapped (non-prelim): 427
length of query: 302
length of database: 18,247,518
effective HSP length: 102
effective length of query: 200
effective length of database: 14,385,186
effective search space: 2877037200
effective search space used: 2877037200
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.