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Search of human proteins with 239746480
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239746480 PREDICTED: hypothetical protein XP_002343771 [Homo
sapiens]
(130 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239746480 PREDICTED: hypothetical protein XP_002343771 [Homo ... 265 1e-71
gi|239753839 PREDICTED: hypothetical protein [Homo sapiens] 36 0.010
gi|222418647 mucin 7, secreted precursor [Homo sapiens] 35 0.017
gi|169207217 PREDICTED: zinc finger homeobox 2 [Homo sapiens] 35 0.017
gi|169207592 PREDICTED: zinc finger homeobox 2 [Homo sapiens] 35 0.017
gi|169207014 PREDICTED: zinc finger homeobox 2 [Homo sapiens] 35 0.017
gi|222418649 mucin 7, secreted precursor [Homo sapiens] 35 0.017
gi|222418645 mucin 7, secreted precursor [Homo sapiens] 35 0.017
gi|239742674 PREDICTED: hypothetical protein XP_002342580 [Homo ... 34 0.029
gi|11067749 bromodomain containing protein 3 [Homo sapiens] 34 0.037
gi|7524363 paired box 8 isoform PAX8C [Homo sapiens] 33 0.064
gi|161019170 mucin 5AC [Homo sapiens] 33 0.083
gi|153945878 mucin 5, subtype B, tracheobronchial [Homo sapiens] 33 0.083
gi|239745807 PREDICTED: keratin associated protein 4-9 [Homo sap... 32 0.14
gi|111120318 NK6 transcription factor related, locus 1 [Homo sap... 32 0.14
gi|24497589 aristaless related homeobox [Homo sapiens] 32 0.14
gi|210032509 hypothetical protein LOC100130302 [Homo sapiens] 32 0.14
gi|112734870 hypothetical protein LOC57648 [Homo sapiens] 32 0.14
gi|239754100 PREDICTED: hypothetical protein XP_002345880 [Homo ... 32 0.19
gi|239748649 PREDICTED: hypothetical protein [Homo sapiens] 32 0.19
gi|122937251 lysine (K)-specific demethylase 6B [Homo sapiens] 32 0.19
gi|4502739 cyclin-dependent kinase 5, regulatory subunit 2 [Homo... 32 0.19
gi|71044479 death inducer-obliterator 1 isoform c [Homo sapiens] 31 0.24
gi|71044477 death inducer-obliterator 1 isoform b [Homo sapiens] 31 0.24
gi|5453613 CD7 antigen precursor [Homo sapiens] 31 0.32
gi|87239981 tankyrase, TRF1-interacting ankyrin-related ADP-ribo... 31 0.32
gi|45592959 LIM domain binding 3 isoform 1 [Homo sapiens] 30 0.41
gi|19923597 Sin3A-associated protein, 130kDa isoform b [Homo sap... 30 0.41
gi|24308171 zinc finger protein 280C [Homo sapiens] 30 0.41
gi|154759273 testis specific, 10 interacting protein [Homo sapiens] 30 0.41
>gi|239746480 PREDICTED: hypothetical protein XP_002343771 [Homo
sapiens]
Length = 130
Score = 265 bits (676), Expect = 1e-71
Identities = 130/130 (100%), Positives = 130/130 (100%)
Query: 1 MKETVIFLPRMAVKSSRASAALPSSRFSSWHRACSASPAAATTAAPSAWGLSSNIPSGPA 60
MKETVIFLPRMAVKSSRASAALPSSRFSSWHRACSASPAAATTAAPSAWGLSSNIPSGPA
Sbjct: 1 MKETVIFLPRMAVKSSRASAALPSSRFSSWHRACSASPAAATTAAPSAWGLSSNIPSGPA 60
Query: 61 GCAPRPPTSFSLPGALPTTTCAKARENLQLRDVLSSTVCLRFSPQKKSVFPPELLAVPPR 120
GCAPRPPTSFSLPGALPTTTCAKARENLQLRDVLSSTVCLRFSPQKKSVFPPELLAVPPR
Sbjct: 61 GCAPRPPTSFSLPGALPTTTCAKARENLQLRDVLSSTVCLRFSPQKKSVFPPELLAVPPR 120
Query: 121 KCDKKMYLRF 130
KCDKKMYLRF
Sbjct: 121 KCDKKMYLRF 130
>gi|239753839 PREDICTED: hypothetical protein [Homo sapiens]
Length = 257
Score = 35.8 bits (81), Expect = 0.010
Identities = 26/79 (32%), Positives = 29/79 (36%), Gaps = 10/79 (12%)
Query: 19 SAALPSSRFSSWHRACSASPAAATTAAPSAWGLSSNI---PSGPAGCAPRPPTSFSLPG- 74
SAALP S SS A P A AP W + + P+ A AP PP P
Sbjct: 175 SAALPRSPSSSRRWAAMPGPGAPRPGAPGTWPVGFAVAAPPAAAASVAPPPPAVAGAPAA 234
Query: 75 ------ALPTTTCAKAREN 87
A P C EN
Sbjct: 235 AFRGWVAAPDPGCTPGTEN 253
>gi|222418647 mucin 7, secreted precursor [Homo sapiens]
Length = 377
Score = 35.0 bits (79), Expect = 0.017
Identities = 34/106 (32%), Positives = 42/106 (39%), Gaps = 18/106 (16%)
Query: 16 SRASAALPSSRFSSWHRACSASPAAATTAAP--SAWGLSSNIPSGPAGCAPRPPTSFSLP 73
S + A PSS A +P+A T A P SA ++ P P P PP+S
Sbjct: 173 SATTPAPPSSSAPPETTAAPPTPSATTQAPPSSSAPPETTAAPPTPPATTPAPPSS---- 228
Query: 74 GALPTTTCAKARENLQLRDVLSSTVCLRFSPQKKSVFPPELLAVPP 119
A P TT A + LSS+ PPE AVPP
Sbjct: 229 SAPPETTAAPPTPSATTPAPLSSSA------------PPETTAVPP 262
Score = 27.7 bits (60), Expect = 2.7
Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
Query: 19 SAALPSSRFSSWHRACSASPAAATTAAPSAWGLSSNIPSGPAGCAPRPPTS--FSLPGAL 76
+ A+P + ++ SAS TTAAP S+ P+ P+ AP+ T+ + P +
Sbjct: 257 TTAVPPTPSATTLDPSSASAPPETTAAPPT--PSATTPAPPSSPAPQETTAAPITTPNSS 314
Query: 77 PTTTCAKARE 86
PTT E
Sbjct: 315 PTTLAPDTSE 324
>gi|169207217 PREDICTED: zinc finger homeobox 2 [Homo sapiens]
Length = 2790
Score = 35.0 bits (79), Expect = 0.017
Identities = 23/81 (28%), Positives = 32/81 (39%), Gaps = 18/81 (22%)
Query: 56 PSGPAGCAPRPPTSFSL------------------PGALPTTTCAKARENLQLRDVLSST 97
P+GP G P PP L P P TC + + +D+L+S
Sbjct: 1946 PAGPEGPLPEPPDGEELSQAEATKAGGKEPEEKATPSPSPAHTCDQCAISFSSQDLLTSH 2005
Query: 98 VCLRFSPQKKSVFPPELLAVP 118
L F P + PP+LL +P
Sbjct: 2006 RRLHFLPSLQPSAPPQLLDLP 2026
>gi|169207592 PREDICTED: zinc finger homeobox 2 [Homo sapiens]
Length = 2706
Score = 35.0 bits (79), Expect = 0.017
Identities = 23/81 (28%), Positives = 32/81 (39%), Gaps = 18/81 (22%)
Query: 56 PSGPAGCAPRPPTSFSL------------------PGALPTTTCAKARENLQLRDVLSST 97
P+GP G P PP L P P TC + + +D+L+S
Sbjct: 1862 PAGPEGPLPEPPDGEELSQAEATKAGGKEPEEKATPSPSPAHTCDQCAISFSSQDLLTSH 1921
Query: 98 VCLRFSPQKKSVFPPELLAVP 118
L F P + PP+LL +P
Sbjct: 1922 RRLHFLPSLQPSAPPQLLDLP 1942
>gi|169207014 PREDICTED: zinc finger homeobox 2 [Homo sapiens]
Length = 2706
Score = 35.0 bits (79), Expect = 0.017
Identities = 23/81 (28%), Positives = 32/81 (39%), Gaps = 18/81 (22%)
Query: 56 PSGPAGCAPRPPTSFSL------------------PGALPTTTCAKARENLQLRDVLSST 97
P+GP G P PP L P P TC + + +D+L+S
Sbjct: 1862 PAGPEGPLPEPPDGEELSQAEATKAGGKEPEEKATPSPSPAHTCDQCAISFSSQDLLTSH 1921
Query: 98 VCLRFSPQKKSVFPPELLAVP 118
L F P + PP+LL +P
Sbjct: 1922 RRLHFLPSLQPSAPPQLLDLP 1942
>gi|222418649 mucin 7, secreted precursor [Homo sapiens]
Length = 377
Score = 35.0 bits (79), Expect = 0.017
Identities = 34/106 (32%), Positives = 42/106 (39%), Gaps = 18/106 (16%)
Query: 16 SRASAALPSSRFSSWHRACSASPAAATTAAP--SAWGLSSNIPSGPAGCAPRPPTSFSLP 73
S + A PSS A +P+A T A P SA ++ P P P PP+S
Sbjct: 173 SATTPAPPSSSAPPETTAAPPTPSATTQAPPSSSAPPETTAAPPTPPATTPAPPSS---- 228
Query: 74 GALPTTTCAKARENLQLRDVLSSTVCLRFSPQKKSVFPPELLAVPP 119
A P TT A + LSS+ PPE AVPP
Sbjct: 229 SAPPETTAAPPTPSATTPAPLSSSA------------PPETTAVPP 262
Score = 27.7 bits (60), Expect = 2.7
Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
Query: 19 SAALPSSRFSSWHRACSASPAAATTAAPSAWGLSSNIPSGPAGCAPRPPTS--FSLPGAL 76
+ A+P + ++ SAS TTAAP S+ P+ P+ AP+ T+ + P +
Sbjct: 257 TTAVPPTPSATTLDPSSASAPPETTAAPPT--PSATTPAPPSSPAPQETTAAPITTPNSS 314
Query: 77 PTTTCAKARE 86
PTT E
Sbjct: 315 PTTLAPDTSE 324
>gi|222418645 mucin 7, secreted precursor [Homo sapiens]
Length = 377
Score = 35.0 bits (79), Expect = 0.017
Identities = 34/106 (32%), Positives = 42/106 (39%), Gaps = 18/106 (16%)
Query: 16 SRASAALPSSRFSSWHRACSASPAAATTAAP--SAWGLSSNIPSGPAGCAPRPPTSFSLP 73
S + A PSS A +P+A T A P SA ++ P P P PP+S
Sbjct: 173 SATTPAPPSSSAPPETTAAPPTPSATTQAPPSSSAPPETTAAPPTPPATTPAPPSS---- 228
Query: 74 GALPTTTCAKARENLQLRDVLSSTVCLRFSPQKKSVFPPELLAVPP 119
A P TT A + LSS+ PPE AVPP
Sbjct: 229 SAPPETTAAPPTPSATTPAPLSSSA------------PPETTAVPP 262
Score = 27.7 bits (60), Expect = 2.7
Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
Query: 19 SAALPSSRFSSWHRACSASPAAATTAAPSAWGLSSNIPSGPAGCAPRPPTS--FSLPGAL 76
+ A+P + ++ SAS TTAAP S+ P+ P+ AP+ T+ + P +
Sbjct: 257 TTAVPPTPSATTLDPSSASAPPETTAAPPT--PSATTPAPPSSPAPQETTAAPITTPNSS 314
Query: 77 PTTTCAKARE 86
PTT E
Sbjct: 315 PTTLAPDTSE 324
>gi|239742674 PREDICTED: hypothetical protein XP_002342580 [Homo
sapiens]
Length = 125
Score = 34.3 bits (77), Expect = 0.029
Identities = 32/93 (34%), Positives = 42/93 (45%), Gaps = 10/93 (10%)
Query: 35 SASPAAATTAAPSAWGLSSNIPSGPAGCAPRPPTSFS---LPGALPTTTCAKARENL--- 88
S PA + P G S++ GP G P S S LPGA A+ARE L
Sbjct: 27 SRGPAQPSKGGPGVLGSKSSLGRGPTGTLVGLPCSRSRQTLPGAEWRCEAAEAREGLTRK 86
Query: 89 -QLRDVLSSTVCLRFSPQKKSVFPPELLAVPPR 120
+L V +T+ +R ++ F P LLA PR
Sbjct: 87 SRLPVVPYATLWVR---GVEAFFTPRLLASSPR 116
>gi|11067749 bromodomain containing protein 3 [Homo sapiens]
Length = 726
Score = 33.9 bits (76), Expect = 0.037
Identities = 26/96 (27%), Positives = 42/96 (43%), Gaps = 3/96 (3%)
Query: 19 SAALPSSRFSSWHRACSASPAAATTAAPSAWGLSSNIPSGPAGCAPRPPTSFSLPGALPT 78
S+ P++ F S S +P A T P+ +++P PA AP PP + +P PT
Sbjct: 175 SSVSPATPFQSVPPTVSQTPVIAATPVPTITANVTSVPVPPAA-APPPPATPIVPVVPPT 233
Query: 79 TTCAKARENLQLRDVLSSTVCLRFSPQKKSVFPPEL 114
K + + D + T + + +S PP L
Sbjct: 234 PPVVKKKGVKRKADTTTPTTSAITASRSES--PPPL 267
>gi|7524363 paired box 8 isoform PAX8C [Homo sapiens]
Length = 398
Score = 33.1 bits (74), Expect = 0.064
Identities = 25/73 (34%), Positives = 30/73 (41%), Gaps = 11/73 (15%)
Query: 18 ASAALPSSRFSSW--------HRACSASPAAATTAAPS-AWGLSSNIPSGPAGCAPRPPT 68
+S A PSS+ W H + AA PS AW N + P P PPT
Sbjct: 328 SSRARPSSQGERWWGPRCPDTHPTSPPADRAAMPPLPSQAWWQEVNTLAMPMATPPTPPT 387
Query: 69 SFSLPGALPTTTC 81
+ PGA PT C
Sbjct: 388 --ARPGASPTPAC 398
>gi|161019170 mucin 5AC [Homo sapiens]
Length = 6207
Score = 32.7 bits (73), Expect = 0.083
Identities = 28/85 (32%), Positives = 38/85 (44%), Gaps = 10/85 (11%)
Query: 18 ASAALPSSRFSSWHRACSASPAAATTAAPSAWGLSSNIPSGPAGCAPRPPTSFSLPGALP 77
+S A+PSS + + A TTA+ S+ PS G AP PP + P P
Sbjct: 4708 SSTAMPSSTPGTTWILTELTTTATTTASTG----STATPSSTPGTAP-PPKVLTSPATTP 4762
Query: 78 TTTCAKARENLQLR-----DVLSST 97
T T +KA + R VL+ST
Sbjct: 4763 TATSSKATSSSSPRTATTLPVLTST 4787
Score = 31.6 bits (70), Expect = 0.19
Identities = 29/85 (34%), Positives = 37/85 (43%), Gaps = 10/85 (11%)
Query: 18 ASAALPSSRFSSWHRACSASPAAATTAAPSAWGLSSNIPSGPAGCAPRPPTSFSLPGALP 77
+S A PSS + + AA TTA S+ IPS G AP PP + P
Sbjct: 3561 SSTATPSSTPGTTWILTEQTTAATTTATTG----STAIPSSTPGTAP-PPKVLTSTATTP 3615
Query: 78 TTTCAKARENLQLR-----DVLSST 97
T T +KA + R VL+ST
Sbjct: 3616 TATSSKATSSSSPRTATTLPVLTST 3640
Score = 26.6 bits (57), Expect = 6.0
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Query: 55 IPSGPA---GCAPRPPTSFSLPGALPTTTCAKARENLQL 90
+P GP+ G +P+P S S A+PT T A E L
Sbjct: 2123 VPCGPSPAPGTSPQPSLSASTEPAVPTPTQTTATEKTTL 2161
Score = 26.6 bits (57), Expect = 6.0
Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 8/71 (11%)
Query: 8 LPRMAVKSSRASAALPSSRFS--SWHRACSASPAAATTAAPSAWGLSSNIPSGPAGCAPR 65
+P +A + +ALP + S +W P+ T AP+ S P+G A A +
Sbjct: 2378 VPGVATSTLPTRSALPGTTGSLGTWR------PSQPPTLAPTTMATSRARPTGTASTASK 2431
Query: 66 PPTSFSLPGAL 76
P + SL L
Sbjct: 2432 EPLTTSLAPTL 2442
>gi|153945878 mucin 5, subtype B, tracheobronchial [Homo sapiens]
Length = 5765
Score = 32.7 bits (73), Expect = 0.083
Identities = 28/85 (32%), Positives = 38/85 (44%), Gaps = 10/85 (11%)
Query: 18 ASAALPSSRFSSWHRACSASPAAATTAAPSAWGLSSNIPSGPAGCAPRPPTSFSLPGALP 77
+S A+PSS + + A TTA+ S+ PS G AP PP + P P
Sbjct: 4238 SSTAMPSSTPGTTWILTELTTTATTTASTG----STATPSSTPGTAP-PPKVLTSPATTP 4292
Query: 78 TTTCAKARENLQLR-----DVLSST 97
T T +KA + R VL+ST
Sbjct: 4293 TATSSKATSSSSPRTATTLPVLTST 4317
Score = 31.6 bits (70), Expect = 0.19
Identities = 29/85 (34%), Positives = 37/85 (43%), Gaps = 10/85 (11%)
Query: 18 ASAALPSSRFSSWHRACSASPAAATTAAPSAWGLSSNIPSGPAGCAPRPPTSFSLPGALP 77
+S A PSS + + AA TTA S+ IPS G AP PP + P
Sbjct: 2981 SSTATPSSTPGTTWILTEQTTAATTTATTG----STAIPSSTPGTAP-PPKVLTSTATTP 3035
Query: 78 TTTCAKARENLQLR-----DVLSST 97
T T +KA + R VL+ST
Sbjct: 3036 TATSSKATSSSSPRTATTLPVLTST 3060
Score = 26.6 bits (57), Expect = 6.0
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Query: 55 IPSGPA---GCAPRPPTSFSLPGALPTTTCAKARENLQL 90
+P GP+ G +P+P S S A+PT T A E L
Sbjct: 1433 VPCGPSPAPGTSPQPSLSASTEPAVPTPTQTTATEKTTL 1471
Score = 26.6 bits (57), Expect = 6.0
Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 8/71 (11%)
Query: 8 LPRMAVKSSRASAALPSSRFS--SWHRACSASPAAATTAAPSAWGLSSNIPSGPAGCAPR 65
+P +A + +ALP + S +W P+ T AP+ S P+G A A +
Sbjct: 1688 VPGVATSTLPTRSALPGTTGSLGTWR------PSQPPTLAPTTMATSRARPTGTASTASK 1741
Query: 66 PPTSFSLPGAL 76
P + SL L
Sbjct: 1742 EPLTTSLAPTL 1752
>gi|239745807 PREDICTED: keratin associated protein 4-9 [Homo
sapiens]
Length = 254
Score = 32.0 bits (71), Expect = 0.14
Identities = 29/81 (35%), Positives = 36/81 (44%), Gaps = 4/81 (4%)
Query: 7 FLPRMAVKSS-RASAALPSSRFSSWHRACSASPAAATTAA--PSAWGLSSNIPSGPAGCA 63
F R A K+S R AA P++ +A+PA AA PSA L + P PA A
Sbjct: 4 FSTRAAAKTSVRRPAAAPAAVRPPAAGPPAAAPAVVYPAAAGPSAASLCAANPLVPAPAA 63
Query: 64 PRPPTSFSLPGALPTTTCAKA 84
RPP + P P C A
Sbjct: 64 VRPPVA-GPPATAPAVVCPAA 83
Score = 26.2 bits (56), Expect = 7.8
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 19 SAALPSSRFSSWHRACSASPAAATTAAPSAWGLSSNIPSGPAGCAP 64
+A P++ S C+ASP AA AA S ++ + PA AP
Sbjct: 122 AAVCPAAASPSAASLCAASPTAAAPAAASP-AAAAPLAVNPAAAAP 166
>gi|111120318 NK6 transcription factor related, locus 1 [Homo
sapiens]
Length = 367
Score = 32.0 bits (71), Expect = 0.14
Identities = 34/125 (27%), Positives = 51/125 (40%), Gaps = 22/125 (17%)
Query: 5 VIFLPRMAVKSSRA-SAALPSSRFSSWHRACSASPAAATTAAPSAWGLSSNIPSGPAGCA 63
++ P M V S A +A PS SS + SAS A+A AA +A +++ P+G
Sbjct: 101 ILSRPSMPVASGAALPSASPSGSSSSSSSSASASSASAAAAAAAAAAAAASSPAGLLAGL 160
Query: 64 PR---------PPTSFSLPGALPTTTCAKARENLQLRDVLSSTVCLRFSPQKKSVFPPEL 114
PR PP + P A A R L ++ P + +F P +
Sbjct: 161 PRFSSLSPPPPPPGLYFSPSA--AAVAAVGRYPKPLAEL----------PGRTPIFWPGV 208
Query: 115 LAVPP 119
+ PP
Sbjct: 209 MQSPP 213
>gi|24497589 aristaless related homeobox [Homo sapiens]
Length = 562
Score = 32.0 bits (71), Expect = 0.14
Identities = 18/46 (39%), Positives = 23/46 (50%)
Query: 39 AAATTAAPSAWGLSSNIPSGPAGCAPRPPTSFSLPGALPTTTCAKA 84
AAA AA +A ++ +GP G AP PP + PG P A A
Sbjct: 101 AAAAAAAAAAAAAAATATAGPRGEAPPPPPPTARPGERPDGAGAAA 146
>gi|210032509 hypothetical protein LOC100130302 [Homo sapiens]
Length = 887
Score = 32.0 bits (71), Expect = 0.14
Identities = 30/80 (37%), Positives = 39/80 (48%), Gaps = 10/80 (12%)
Query: 12 AVKSSRASAALPSSRFSSWHRACSASPAAATTAAPSAWGLSSNIPSGPAGCAPRPPTSFS 71
A + A+AA P+ ++ A +A+PAAA +AAPS S PS P A RP
Sbjct: 533 AAAPALAAAAAPAPAPAA-APAVAAAPAAAASAAPS----HSQKPSVPLIQASRP----- 582
Query: 72 LPGALPTTTCAKARENLQLR 91
P A P T K +QLR
Sbjct: 583 CPAAQPPTKFIKIAPAIQLR 602
Score = 26.2 bits (56), Expect = 7.8
Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 5/70 (7%)
Query: 15 SSRASAALPSSRFSSWHRACSASPAAATTAAPSAWGLSSNIPSGPAGCAPRPPTSFSLPG 74
++ A AA ++ ++ A +A+PA A AA + ++ P+ A AP P P
Sbjct: 495 AAAAIAAAAAAAAAAAAAAAAAAPAPALAAAAAPALAAAAAPALAAAAAPAP-----APA 549
Query: 75 ALPTTTCAKA 84
A P A A
Sbjct: 550 AAPAVAAAPA 559
>gi|112734870 hypothetical protein LOC57648 [Homo sapiens]
Length = 1094
Score = 32.0 bits (71), Expect = 0.14
Identities = 27/86 (31%), Positives = 37/86 (43%), Gaps = 10/86 (11%)
Query: 10 RMAVKSSRASAALPSSRFSSWHRACSASPAAATTAAPSAWGLSSNIPSGPAGCAPRPPTS 69
R A+ + PSS + R + S AA+ GLSS P+GP PRPP S
Sbjct: 913 RRALSGRASPVPAPSSGLHAAVRLKACSLAASE-------GLSSAQPNGPPEAEPRPPQS 965
Query: 70 FSLPGALPTTTCAKARENLQLRDVLS 95
P + + +K LQL +S
Sbjct: 966 ---PASTASFIFSKGSRKLQLERPVS 988
>gi|239754100 PREDICTED: hypothetical protein XP_002345880 [Homo
sapiens]
Length = 125
Score = 31.6 bits (70), Expect = 0.19
Identities = 29/90 (32%), Positives = 35/90 (38%), Gaps = 4/90 (4%)
Query: 35 SASPAAATTAAPSAWGLSSNIPSGPAGCAPRPPTSFS---LPGALPTTTCAKARENLQLR 91
S PA + P G S++ GP G P S S LPGA A+ARE L +
Sbjct: 27 SRGPAQPSKGGPGVLGSKSSLGRGPTGTLVGLPCSRSRQTLPGAEWRCEAAEAREGLTRK 86
Query: 92 DVLSSTVCLRFSPQKKSVF-PPELLAVPPR 120
L + F P LLA PR
Sbjct: 87 SRLPVVPYATLWVRGVEAFCTPRLLASSPR 116
>gi|239748649 PREDICTED: hypothetical protein [Homo sapiens]
Length = 125
Score = 31.6 bits (70), Expect = 0.19
Identities = 29/90 (32%), Positives = 35/90 (38%), Gaps = 4/90 (4%)
Query: 35 SASPAAATTAAPSAWGLSSNIPSGPAGCAPRPPTSFS---LPGALPTTTCAKARENLQLR 91
S PA + P G S++ GP G P S S LPGA A+ARE L +
Sbjct: 27 SRGPAQPSKGGPGVLGSKSSLGRGPTGTLVGLPCSRSRQTLPGAEWRCEAAEAREGLTRK 86
Query: 92 DVLSSTVCLRFSPQKKSVF-PPELLAVPPR 120
L + F P LLA PR
Sbjct: 87 SRLPVVPYATLWVRGVEAFCTPRLLASSPR 116
>gi|122937251 lysine (K)-specific demethylase 6B [Homo sapiens]
Length = 1682
Score = 31.6 bits (70), Expect = 0.19
Identities = 27/83 (32%), Positives = 37/83 (44%), Gaps = 13/83 (15%)
Query: 38 PAAATTAAPSAWGLSSNIPSGPAGCAPRPPTSFSLPGALPTT--TCAKARENLQLRDVLS 95
PA A TA P L +P+ P G PRPP + S G LP T + RE+ R +
Sbjct: 316 PAPAYTAHPPGHRL---VPAAPPGPGPRPPGAES-HGCLPATRPPGSDLRESRVQRSRMD 371
Query: 96 S-------TVCLRFSPQKKSVFP 111
S T C+ ++P + P
Sbjct: 372 SSVSPAATTACVPYAPSRPPGLP 394
>gi|4502739 cyclin-dependent kinase 5, regulatory subunit 2 [Homo
sapiens]
Length = 367
Score = 31.6 bits (70), Expect = 0.19
Identities = 27/84 (32%), Positives = 36/84 (42%), Gaps = 8/84 (9%)
Query: 38 PAAATTAAPSAWGLSSNIPSGPAGCAPRPP------TSFSLPGALPTTTCAKARENLQLR 91
PAAA T P + G ++ P G G P PP + +PG P +A LR
Sbjct: 129 PAAAATCEPPSGGSAAAQPPGSGGGKPPPPPPPAPQVAPPVPGGSPRRVIVQASTGELLR 188
Query: 92 DVLSSTVCLRFSPQKKSVFPPELL 115
L VC R + K + P EL+
Sbjct: 189 -CLGDFVCRR-CYRLKELSPGELV 210
>gi|71044479 death inducer-obliterator 1 isoform c [Homo sapiens]
Length = 2240
Score = 31.2 bits (69), Expect = 0.24
Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Query: 20 AALPSSRFSSWHRACSASPAAATTAAPSAWGLSSNIPSGPAGCAPRPPTSFSLPGALPTT 79
+A PSS S+ +A A PAAAT A+ G ++ + + P P + PG L
Sbjct: 601 SATPSSGASAARQAGPA-PAAATAASKKFPGSAALVGAVRKPVVPSVPMASPAPGRLGAM 659
Query: 80 TCAKARENLQLR 91
+ A ++ N Q+R
Sbjct: 660 SAAPSQPNSQIR 671
>gi|71044477 death inducer-obliterator 1 isoform b [Homo sapiens]
Length = 1189
Score = 31.2 bits (69), Expect = 0.24
Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Query: 20 AALPSSRFSSWHRACSASPAAATTAAPSAWGLSSNIPSGPAGCAPRPPTSFSLPGALPTT 79
+A PSS S+ +A A PAAAT A+ G ++ + + P P + PG L
Sbjct: 601 SATPSSGASAARQAGPA-PAAATAASKKFPGSAALVGAVRKPVVPSVPMASPAPGRLGAM 659
Query: 80 TCAKARENLQLR 91
+ A ++ N Q+R
Sbjct: 660 SAAPSQPNSQIR 671
>gi|5453613 CD7 antigen precursor [Homo sapiens]
Length = 240
Score = 30.8 bits (68), Expect = 0.32
Identities = 18/48 (37%), Positives = 22/48 (45%), Gaps = 4/48 (8%)
Query: 30 WHRACSASPAAATTAAPSAWGLSSNIPS-GPAGCAPRPPTSFSLPGAL 76
WHR A P A+ AP S +P A P PP + +LP AL
Sbjct: 139 WHRCSDAPPRASALPAPPT---GSALPDPQTASALPDPPAASALPAAL 183
>gi|87239981 tankyrase, TRF1-interacting ankyrin-related ADP-ribose
polymerase [Homo sapiens]
Length = 1327
Score = 30.8 bits (68), Expect = 0.32
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
Query: 15 SSRASAALPSSRFSSWHRACSASPAAATTAAPSAWGLSSNIPSGPAGCAP 64
+S +S++ P+S SS +SP ++ +P A G+SS P GP P
Sbjct: 127 NSPSSSSSPTSSSSS----SPSSPGSSLAESPEAAGVSSTAPLGPGAAGP 172
>gi|45592959 LIM domain binding 3 isoform 1 [Homo sapiens]
Length = 727
Score = 30.4 bits (67), Expect = 0.41
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Query: 12 AVKSSRASAALPSSRFSSWHRACSASPAAATTAAPSAWGLSSNIPSGPAGCAPRP 66
A+ S+ +A S S +A S SPA A ++AP+ ++ GPA AP+P
Sbjct: 344 AIASASTTAPASSPADSPRPQASSYSPAVAASSAPAT---HTSYSEGPAAPAPKP 395
>gi|19923597 Sin3A-associated protein, 130kDa isoform b [Homo
sapiens]
Length = 1048
Score = 30.4 bits (67), Expect = 0.41
Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 8/85 (9%)
Query: 35 SASPAAATTAAPSAWGLSSNIPSGPAGCAPRPPTSFSLPGALPTTTCAKARENLQLRDVL 94
SA+PAA T + S+N P+ G +PRP S+ P T AK + + +
Sbjct: 639 SAAPAATTVVQTHSQSASTNAPA--QGSSPRP----SILRKKPATDGAKPKSEIHVSMAT 692
Query: 95 SSTVCLRFSPQKKSVFPPELLAVPP 119
TV + + + P +AVPP
Sbjct: 693 PVTVSMETVSNQNNDQP--TIAVPP 715
Score = 27.3 bits (59), Expect = 3.5
Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 9/52 (17%)
Query: 33 ACSASPAAATTAAPSAW--GLSS-----NIPSGPAGCAPRPPTSFSLPGALP 77
A +A PA T A P ++ GL +PS P AP PP++ SLP +P
Sbjct: 120 AVTAPPAHLTPAVPLSFSEGLMKPPPKPTMPSRPI--APAPPSTLSLPPKVP 169
>gi|24308171 zinc finger protein 280C [Homo sapiens]
Length = 737
Score = 30.4 bits (67), Expect = 0.41
Identities = 20/66 (30%), Positives = 27/66 (40%), Gaps = 7/66 (10%)
Query: 38 PAAATTAAPSAWGLSSNIPSGPAGCAP-------RPPTSFSLPGALPTTTCAKARENLQL 90
P A T S L S +P+ P GCAP PPTS + P + A + +L
Sbjct: 506 PGAKVTIRASLGPLQSKLPTAPFGCAPGTSFLQVTPPTSQNTTARNPRKSNASRSKTSKL 565
Query: 91 RDVLSS 96
S+
Sbjct: 566 HATTST 571
>gi|154759273 testis specific, 10 interacting protein [Homo sapiens]
Length = 556
Score = 30.4 bits (67), Expect = 0.41
Identities = 22/81 (27%), Positives = 32/81 (39%), Gaps = 3/81 (3%)
Query: 8 LPRMAVKSSRASAALPSSRFSSWHRACSASPAAATTAAPS--AWGLSSNIPSGPAGCAPR 65
LP + S R S ++ H C + A A AWG +IP+G
Sbjct: 135 LPMPSSFSQRQSRRKSTANLPEAHGCCWKTEAQNLKARQQLGAWG-GVSIPTGKGELGSE 193
Query: 66 PPTSFSLPGALPTTTCAKARE 86
PP+ LPG P + A ++
Sbjct: 194 PPSGLQLPGRRPGSGSASDKQ 214
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.127 0.395
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,312,948
Number of Sequences: 37866
Number of extensions: 320859
Number of successful extensions: 2537
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 152
Number of HSP's that attempted gapping in prelim test: 2272
Number of HSP's gapped (non-prelim): 394
length of query: 130
length of database: 18,247,518
effective HSP length: 90
effective length of query: 40
effective length of database: 14,839,578
effective search space: 593583120
effective search space used: 593583120
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.