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Search of human proteins with 239746361
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239746361 PREDICTED: hypothetical protein XP_002343736 [Homo
sapiens]
(508 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239746361 PREDICTED: hypothetical protein XP_002343736 [Homo ... 1042 0.0
gi|239751870 PREDICTED: hypothetical protein XP_002348033 [Homo ... 1039 0.0
gi|239757343 PREDICTED: hypothetical protein XP_002345253 [Homo ... 937 0.0
gi|169234787 hypothetical protein LOC55683 isoform a [Homo sapiens] 40 0.007
gi|21361734 hypothetical protein LOC55683 isoform b [Homo sapiens] 40 0.007
gi|239758067 PREDICTED: similar to facioscapulohumeral muscular ... 39 0.015
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 37 0.032
gi|239756307 PREDICTED: similar to ubiquitin-associated protein ... 37 0.032
gi|239750857 PREDICTED: similar to ubiquitin-associated protein ... 37 0.032
gi|239745220 PREDICTED: hypothetical protein [Homo sapiens] 37 0.032
gi|13540521 basic helix-loop-helix domain containing, class B, 3... 37 0.032
gi|161019170 mucin 5AC [Homo sapiens] 36 0.095
gi|48375167 microtubule-associated protein 6 isoform 2 [Homo sap... 36 0.095
gi|48375173 microtubule-associated protein 6 isoform 1 [Homo sap... 36 0.095
gi|5031587 adenomatosis polyposis coli 2 [Homo sapiens] 36 0.095
gi|8400715 microtubule-associated protein tau isoform 4 [Homo sa... 35 0.12
gi|7656967 cadherin EGF LAG seven-pass G-type receptor 1 [Homo s... 35 0.12
gi|146219843 Snf2-related CBP activator protein [Homo sapiens] 35 0.12
gi|30039694 zinc finger protein 598 [Homo sapiens] 35 0.12
gi|6754638 microtubule-associated protein tau isoform 2 [Homo sa... 35 0.16
gi|8400711 microtubule-associated protein tau isoform 3 [Homo sa... 35 0.16
gi|82534351 microtubule-associated protein tau isoform 1 [Homo s... 35 0.16
gi|178557736 microtubule-associated protein tau isoform 5 [Homo ... 35 0.16
gi|190014636 hypothetical protein LOC286262 isoform 2 [Homo sapi... 35 0.21
gi|190014638 hypothetical protein LOC286262 isoform 1 [Homo sapi... 35 0.21
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 35 0.21
gi|169211815 PREDICTED: keratin associated protein 4.6 [Homo sap... 34 0.28
gi|239754940 PREDICTED: hypothetical protein [Homo sapiens] 34 0.36
gi|19924099 synapsin I isoform Ia [Homo sapiens] 34 0.36
gi|19924097 synapsin I isoform Ib [Homo sapiens] 34 0.36
>gi|239746361 PREDICTED: hypothetical protein XP_002343736 [Homo
sapiens]
Length = 508
Score = 1042 bits (2694), Expect = 0.0
Identities = 508/508 (100%), Positives = 508/508 (100%)
Query: 1 MMKTCSSPYWAVISVLGEARPDSSKASSLGSPSNGASGRAGSPCQNPILALQKDWTSVSL 60
MMKTCSSPYWAVISVLGEARPDSSKASSLGSPSNGASGRAGSPCQNPILALQKDWTSVSL
Sbjct: 1 MMKTCSSPYWAVISVLGEARPDSSKASSLGSPSNGASGRAGSPCQNPILALQKDWTSVSL 60
Query: 61 QWEATLDTRSHSGGHKATLLALDLEELSHAGEILLVGLSHLLLCRLWVHNLQALGSGVKA 120
QWEATLDTRSHSGGHKATLLALDLEELSHAGEILLVGLSHLLLCRLWVHNLQALGSGVKA
Sbjct: 61 QWEATLDTRSHSGGHKATLLALDLEELSHAGEILLVGLSHLLLCRLWVHNLQALGSGVKA 120
Query: 121 TLEAVPEERSRMVDFPPYTTLCFCRRLGDPGLGGLVYLCLPHTPTARLAQVAQAESQVLL 180
TLEAVPEERSRMVDFPPYTTLCFCRRLGDPGLGGLVYLCLPHTPTARLAQVAQAESQVLL
Sbjct: 121 TLEAVPEERSRMVDFPPYTTLCFCRRLGDPGLGGLVYLCLPHTPTARLAQVAQAESQVLL 180
Query: 181 VGVLLDLGGRGGALQFSDQALPSSHRGTPSTSRKPSGHQPAGPTGTCSGTHSARLRPGGP 240
VGVLLDLGGRGGALQFSDQALPSSHRGTPSTSRKPSGHQPAGPTGTCSGTHSARLRPGGP
Sbjct: 181 VGVLLDLGGRGGALQFSDQALPSSHRGTPSTSRKPSGHQPAGPTGTCSGTHSARLRPGGP 240
Query: 241 HTRGMPGSLRGARSQHCSLIRLACFRISVSPSRSFILRYLGTGPLTCGRLASSAVHPGAQ 300
HTRGMPGSLRGARSQHCSLIRLACFRISVSPSRSFILRYLGTGPLTCGRLASSAVHPGAQ
Sbjct: 241 HTRGMPGSLRGARSQHCSLIRLACFRISVSPSRSFILRYLGTGPLTCGRLASSAVHPGAQ 300
Query: 301 AAASPASQAAAPATCRICARSHPSVRSPPGEGEGEVLQLLADTPGPEEKTPGRPSPFPPH 360
AAASPASQAAAPATCRICARSHPSVRSPPGEGEGEVLQLLADTPGPEEKTPGRPSPFPPH
Sbjct: 301 AAASPASQAAAPATCRICARSHPSVRSPPGEGEGEVLQLLADTPGPEEKTPGRPSPFPPH 360
Query: 361 LPFCALVETVHTGCQCALGGHQPGRFPPQILEQRKTGVESVSYFTGRGDEGRAQSHVPAD 420
LPFCALVETVHTGCQCALGGHQPGRFPPQILEQRKTGVESVSYFTGRGDEGRAQSHVPAD
Sbjct: 361 LPFCALVETVHTGCQCALGGHQPGRFPPQILEQRKTGVESVSYFTGRGDEGRAQSHVPAD 420
Query: 421 KWPSAPECYRQLGQMPVWGSTEVDEKPDSVLRWAPSSMMLQAGILERLVRPPATPAPGDS 480
KWPSAPECYRQLGQMPVWGSTEVDEKPDSVLRWAPSSMMLQAGILERLVRPPATPAPGDS
Sbjct: 421 KWPSAPECYRQLGQMPVWGSTEVDEKPDSVLRWAPSSMMLQAGILERLVRPPATPAPGDS 480
Query: 481 PMILAAVDAPIMMDRLGAMKDIRDSTYS 508
PMILAAVDAPIMMDRLGAMKDIRDSTYS
Sbjct: 481 PMILAAVDAPIMMDRLGAMKDIRDSTYS 508
>gi|239751870 PREDICTED: hypothetical protein XP_002348033 [Homo
sapiens]
Length = 508
Score = 1039 bits (2687), Expect = 0.0
Identities = 507/508 (99%), Positives = 507/508 (99%)
Query: 1 MMKTCSSPYWAVISVLGEARPDSSKASSLGSPSNGASGRAGSPCQNPILALQKDWTSVSL 60
MMKTCSSPYWAVISVLGEARPDSSKASSLGSPSNGASGRAGSPCQNPILALQKDWTSVSL
Sbjct: 1 MMKTCSSPYWAVISVLGEARPDSSKASSLGSPSNGASGRAGSPCQNPILALQKDWTSVSL 60
Query: 61 QWEATLDTRSHSGGHKATLLALDLEELSHAGEILLVGLSHLLLCRLWVHNLQALGSGVKA 120
QWEATLDTRSHSGGHKATLLALDLEELSHAGEILLVGLSHLLLCRLWVHNLQALGSGVKA
Sbjct: 61 QWEATLDTRSHSGGHKATLLALDLEELSHAGEILLVGLSHLLLCRLWVHNLQALGSGVKA 120
Query: 121 TLEAVPEERSRMVDFPPYTTLCFCRRLGDPGLGGLVYLCLPHTPTARLAQVAQAESQVLL 180
TLEAVPEERSRMVDFPPYTTLCFCRRLGDPGLGGLVYLCLPHTPTARLAQVAQAESQVLL
Sbjct: 121 TLEAVPEERSRMVDFPPYTTLCFCRRLGDPGLGGLVYLCLPHTPTARLAQVAQAESQVLL 180
Query: 181 VGVLLDLGGRGGALQFSDQALPSSHRGTPSTSRKPSGHQPAGPTGTCSGTHSARLRPGGP 240
VGVLLDLGGRGGALQFSDQALPSSHRGTPSTS KPSGHQPAGPTGTCSGTHSARLRPGGP
Sbjct: 181 VGVLLDLGGRGGALQFSDQALPSSHRGTPSTSPKPSGHQPAGPTGTCSGTHSARLRPGGP 240
Query: 241 HTRGMPGSLRGARSQHCSLIRLACFRISVSPSRSFILRYLGTGPLTCGRLASSAVHPGAQ 300
HTRGMPGSLRGARSQHCSLIRLACFRISVSPSRSFILRYLGTGPLTCGRLASSAVHPGAQ
Sbjct: 241 HTRGMPGSLRGARSQHCSLIRLACFRISVSPSRSFILRYLGTGPLTCGRLASSAVHPGAQ 300
Query: 301 AAASPASQAAAPATCRICARSHPSVRSPPGEGEGEVLQLLADTPGPEEKTPGRPSPFPPH 360
AAASPASQAAAPATCRICARSHPSVRSPPGEGEGEVLQLLADTPGPEEKTPGRPSPFPPH
Sbjct: 301 AAASPASQAAAPATCRICARSHPSVRSPPGEGEGEVLQLLADTPGPEEKTPGRPSPFPPH 360
Query: 361 LPFCALVETVHTGCQCALGGHQPGRFPPQILEQRKTGVESVSYFTGRGDEGRAQSHVPAD 420
LPFCALVETVHTGCQCALGGHQPGRFPPQILEQRKTGVESVSYFTGRGDEGRAQSHVPAD
Sbjct: 361 LPFCALVETVHTGCQCALGGHQPGRFPPQILEQRKTGVESVSYFTGRGDEGRAQSHVPAD 420
Query: 421 KWPSAPECYRQLGQMPVWGSTEVDEKPDSVLRWAPSSMMLQAGILERLVRPPATPAPGDS 480
KWPSAPECYRQLGQMPVWGSTEVDEKPDSVLRWAPSSMMLQAGILERLVRPPATPAPGDS
Sbjct: 421 KWPSAPECYRQLGQMPVWGSTEVDEKPDSVLRWAPSSMMLQAGILERLVRPPATPAPGDS 480
Query: 481 PMILAAVDAPIMMDRLGAMKDIRDSTYS 508
PMILAAVDAPIMMDRLGAMKDIRDSTYS
Sbjct: 481 PMILAAVDAPIMMDRLGAMKDIRDSTYS 508
>gi|239757343 PREDICTED: hypothetical protein XP_002345253 [Homo
sapiens]
Length = 521
Score = 937 bits (2423), Expect = 0.0
Identities = 473/521 (90%), Positives = 479/521 (91%), Gaps = 13/521 (2%)
Query: 1 MMKTCSSPYWAVISVLGEARPDSSKASSLGSPSNGASGRAGSPCQNPILALQKDWTSVSL 60
MMKTCSSPYWAVISVLGEARPDSSKASSLGSPSNGASGRAGSPCQNPILALQKDWTSVSL
Sbjct: 1 MMKTCSSPYWAVISVLGEARPDSSKASSLGSPSNGASGRAGSPCQNPILALQKDWTSVSL 60
Query: 61 QWEATLDTRSHSGGHKATLLALDLEELSHAGEILLVGLSHLLLCRLWVHNLQALGSGVKA 120
QWEATLDTRSHSGGHKATLLALDLEELSHAGEILLVGLSHLLLCRLWVHNLQALGSGVKA
Sbjct: 61 QWEATLDTRSHSGGHKATLLALDLEELSHAGEILLVGLSHLLLCRLWVHNLQALGSGVKA 120
Query: 121 TLEAVPEERSRMVDFPPYTTLCFCRRLGDPGLGGLVYLCLPHTPTARLAQVAQAESQVLL 180
TLEAVPEERSRMVDFPPYTTLCFCRRLGDPGLGGLVYLCLPHTPTARLAQVAQAESQVLL
Sbjct: 121 TLEAVPEERSRMVDFPPYTTLCFCRRLGDPGLGGLVYLCLPHTPTARLAQVAQAESQVLL 180
Query: 181 VGVLLDLGGRGGALQFSDQALPSSHRGTPSTSRKPSGHQPAGPTGTCSGTHSARLRPGGP 240
VGVLLDLGGRGGALQFSDQALPSSHRGTPSTS KPSGHQPAGPTGTCSGTHSARLRPGGP
Sbjct: 181 VGVLLDLGGRGGALQFSDQALPSSHRGTPSTSPKPSGHQPAGPTGTCSGTHSARLRPGGP 240
Query: 241 HTRGMPGSLRGARSQHCSLIRLACFRISVSPSRSFILRYLGTGPLTCGRLASSAVHPGAQ 300
HTRGM GSLRGARSQHCSLIRLACFRISVSPSRSFILRYLGTGPLTCGRLASSAVHPGAQ
Sbjct: 241 HTRGMLGSLRGARSQHCSLIRLACFRISVSPSRSFILRYLGTGPLTCGRLASSAVHPGAQ 300
Query: 301 AAASPASQAAAPATCRICARSHPSVRSPPGEGEGEVLQLLADTPGPEEKTPGRPSPFPPH 360
AAASPASQAAAPATCRICARSHPSVRSPPGEGEGEVLQLLADTPGPEEKTPGRPSPFPPH
Sbjct: 301 AAASPASQAAAPATCRICARSHPSVRSPPGEGEGEVLQLLADTPGPEEKTPGRPSPFPPH 360
Query: 361 LPFCALVETVHTGCQCALGGHQPGRFPPQILEQRKTGVESVSYFTGRGDEGRAQSHVPAD 420
LPFCALVETVHTGCQCALGGHQPGRFPPQILEQRKTGVESVSYFTGRGDEGRAQSHVPAD
Sbjct: 361 LPFCALVETVHTGCQCALGGHQPGRFPPQILEQRKTGVESVSYFTGRGDEGRAQSHVPAD 420
Query: 421 KWPSAPECYRQLGQMP-----VWGSTEVDEKPD--SVLRWAPSSMMLQAGIL-----ERL 468
KWPSAPECYRQLGQM G+ E ++ +WA L + +
Sbjct: 421 KWPSAPECYRQLGQMVGGCSGCLGTAEGSRGAGGGAMTQWAHRWQGLHDVTVVDVAGHSV 480
Query: 469 VRPPATPA-PGDSPMILAAVDAPIMMDRLGAMKDIRDSTYS 508
RPP PGDSPMILAAVDAPIMMDRLGAMKDIRDSTYS
Sbjct: 481 SRPPLHGTQPGDSPMILAAVDAPIMMDRLGAMKDIRDSTYS 521
>gi|169234787 hypothetical protein LOC55683 isoform a [Homo sapiens]
Length = 878
Score = 39.7 bits (91), Expect = 0.007
Identities = 58/252 (23%), Positives = 88/252 (34%), Gaps = 19/252 (7%)
Query: 266 RISVSPSRSFILRYLGTGPLTCGRLASSAVHPGAQAAASPASQAAAPATCRICA------ 319
++ SPS S L + + P + + + V +++ +SQ R A
Sbjct: 519 KLPASPSGSEDLSSVSSSPTSSPKTKVTTVTSAQKSSQIGSSQLLKRHVQRTEAVLTHKQ 578
Query: 320 RSHPSVRSPPGEGEGEVLQLLADTPGPEEKTPGRPSPFPPHLPFCALVETVHTGCQCALG 379
P PP EGE E L++ P PG + P + + + G CA
Sbjct: 579 AQVPISSEPPEEGEKEDLRVQLKRHHPSSPLPGSKTSKRPKIKVSLISQGDTAGGPCAPS 638
Query: 380 -GHQP----GRFPPQILEQRKTGVESVSYFTGRGDEGRAQSHVPADKWPSAPECYRQLGQ 434
G P G+ L Q G + ++ ++ V A PS
Sbjct: 639 QGSAPEAAGGKPITMTLGQASAGAKELTGLLTTAKSSSSEGGVSASPVPSVVSSSTAPSA 698
Query: 435 MPVWGSTEVDEKPDSVLRWAPSSMMLQAG-------ILERLVRPPATPAPGDSPMILAAV 487
+ S V P S L A S+ L G I + PA P+PG +P +V
Sbjct: 699 LHTLQSRLVATSPGSSLPGATSASSLLQGLSFSLQDISSKTSGLPANPSPGPAPQ-ATSV 757
Query: 488 DAPIMMDRLGAM 499
P M LGA+
Sbjct: 758 KLPTPMQSLGAI 769
>gi|21361734 hypothetical protein LOC55683 isoform b [Homo sapiens]
Length = 791
Score = 39.7 bits (91), Expect = 0.007
Identities = 58/252 (23%), Positives = 88/252 (34%), Gaps = 19/252 (7%)
Query: 266 RISVSPSRSFILRYLGTGPLTCGRLASSAVHPGAQAAASPASQAAAPATCRICA------ 319
++ SPS S L + + P + + + V +++ +SQ R A
Sbjct: 432 KLPASPSGSEDLSSVSSSPTSSPKTKVTTVTSAQKSSQIGSSQLLKRHVQRTEAVLTHKQ 491
Query: 320 RSHPSVRSPPGEGEGEVLQLLADTPGPEEKTPGRPSPFPPHLPFCALVETVHTGCQCALG 379
P PP EGE E L++ P PG + P + + + G CA
Sbjct: 492 AQVPISSEPPEEGEKEDLRVQLKRHHPSSPLPGSKTSKRPKIKVSLISQGDTAGGPCAPS 551
Query: 380 -GHQP----GRFPPQILEQRKTGVESVSYFTGRGDEGRAQSHVPADKWPSAPECYRQLGQ 434
G P G+ L Q G + ++ ++ V A PS
Sbjct: 552 QGSAPEAAGGKPITMTLGQASAGAKELTGLLTTAKSSSSEGGVSASPVPSVVSSSTAPSA 611
Query: 435 MPVWGSTEVDEKPDSVLRWAPSSMMLQAG-------ILERLVRPPATPAPGDSPMILAAV 487
+ S V P S L A S+ L G I + PA P+PG +P +V
Sbjct: 612 LHTLQSRLVATSPGSSLPGATSASSLLQGLSFSLQDISSKTSGLPANPSPGPAPQ-ATSV 670
Query: 488 DAPIMMDRLGAM 499
P M LGA+
Sbjct: 671 KLPTPMQSLGAI 682
>gi|239758067 PREDICTED: similar to facioscapulohumeral muscular
dystrophy [Homo sapiens]
Length = 468
Score = 38.5 bits (88), Expect = 0.015
Identities = 49/166 (29%), Positives = 63/166 (37%), Gaps = 19/166 (11%)
Query: 205 HRGTPSTSRKPSGHQPAGPTGTCSGTHS--ARLRPGGPHTR-GMPGSLRGARSQHCSLIR 261
H G + +G TG C S A G TR G +R ++ SL+R
Sbjct: 243 HPGQAGRAPTKAGSLCNAATGECHPDPSWVAFAHIGAWGTRCGGGKEFSSSRKRYSSLLR 302
Query: 262 -----LACFRISVSPSRSFILRYLGTGPLTCGRLASSAVHPGAQAAASPASQAAAPATCR 316
A S SP F+ + + S HP A A S A AT R
Sbjct: 303 GASREAASSNASSSPGTPFLGKVVPAAETP----GSPGAHPAAGRRAVQTSAPAPGATGR 358
Query: 317 I--CARSHPSVRSPPG--EGEGEVLQLLADTPGPEEKTPGRPSPFP 358
C S P++R P G GE E+ +LL TP + PG P P P
Sbjct: 359 APGCLASAPAMRRPLGAQAGEVELPRLLVPTP---PRRPGDPGPSP 401
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 37.4 bits (85), Expect = 0.032
Identities = 36/124 (29%), Positives = 44/124 (35%), Gaps = 18/124 (14%)
Query: 207 GTPSTSRKPSGHQPAGPTGTCSGTHSARLRPGGPHTRGMPGSLRGARSQHCSLIRLACFR 266
G P + P G PAGP G G R PGGP G PG+ RG S
Sbjct: 837 GPPGVAGPPGGSGPAGPPGP-QGVKGERGSPGGPGAAGFPGA-RGLPGPPGSNGNPGPPG 894
Query: 267 ISVSPSRSFILRYLGTGPLTCGRLASSAVHPGAQAAASPASQAAAPATCRICARSHPSVR 326
S SP + GP A + PG+ + P A P + P +
Sbjct: 895 PSGSPGKDG-----PPGP------AGNTGAPGSPGVSGPKGDAGQPG-----EKGSPGAQ 938
Query: 327 SPPG 330
PPG
Sbjct: 939 GPPG 942
Score = 35.8 bits (81), Expect = 0.095
Identities = 25/66 (37%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
Query: 189 GRGGALQFSDQALPSSHRGTPSTSRKPSGHQPAGPTGTCSGTHSARLRPGGPHTRGMPGS 248
G GA F A P+ G + + PAGP G +G PGGP RGMPGS
Sbjct: 483 GERGAPGFRGPAGPNGIPGEKGPAGERGAPGPAGPRGA-AGEPGRDGVPGGPGMRGMPGS 541
Query: 249 LRGARS 254
G S
Sbjct: 542 PGGPGS 547
Score = 31.2 bits (69), Expect = 2.3
Identities = 35/123 (28%), Positives = 43/123 (34%), Gaps = 32/123 (26%)
Query: 148 GDPGLGGLVYLCLPHTPTARLAQVAQAESQVLLVGVLLDLGGRGGALQFSDQALPSSHRG 207
G PG G+ C PT Q +S + GV + GG + A P G
Sbjct: 133 GSPGPPGICESC----PTGPQNYSPQYDSYDVKSGVAV-----GGLAGYPGPAGPPGPPG 183
Query: 208 TPSTSRKPS-----GHQ-------------PAGPTGTC-----SGTHSARLRPGGPHTRG 244
P TS P G+Q P GP G +G RPG P RG
Sbjct: 184 PPGTSGHPGSPGSPGYQGPPGEPGQAGPSGPPGPPGAIGPSGPAGKDGESGRPGRPGERG 243
Query: 245 MPG 247
+PG
Sbjct: 244 LPG 246
Score = 30.0 bits (66), Expect = 5.2
Identities = 35/133 (26%), Positives = 46/133 (34%), Gaps = 9/133 (6%)
Query: 202 PSSHRGTPSTSRKPSGHQPAGPTGTCSGTHSARLRPGGPHTRGMPGSLRGARSQHCSLIR 261
PS G TS P P GP G G + PG P G PG GA C +
Sbjct: 1144 PSGPPGKDGTSGHPGPIGPPGPRGN-RGERGSEGSPGHPGQPGPPGP-PGAPGPCCGGVG 1201
Query: 262 LACFRISVSPSRSFILRYLGTGP----LTCGRLASS--AVHPGAQAAASPASQAAAPA-T 314
A Y G P + + +S +V+ ++ SP PA
Sbjct: 1202 AAAIAGIGGEKAGGFAPYYGDEPMDFKINTDEIMTSLKSVNGQIESLISPDGSRKNPARN 1261
Query: 315 CRICARSHPSVRS 327
CR HP ++S
Sbjct: 1262 CRDLKFCHPELKS 1274
>gi|239756307 PREDICTED: similar to ubiquitin-associated protein 1
(predicted) [Homo sapiens]
Length = 290
Score = 37.4 bits (85), Expect = 0.032
Identities = 59/238 (24%), Positives = 83/238 (34%), Gaps = 38/238 (15%)
Query: 281 GTGPLTCGRLASSAVHPGAQAAASPA-SQAAAPATCRICARSHPSVRSPPGEGEGEVLQL 339
G P CG +++ P SP A AP T R H GE E E
Sbjct: 59 GPSPYQCGDPGTASAPPAWLLLVSPEHGLAPAPTTIRDPEAGHQERPEEEGEDEAEASSG 118
Query: 340 LADTPGPEEKTPGRPSPFPPHLPFCALVETVHTGCQCALGGHQ----PGRF--PPQILEQ 393
+ P P PG P+ P C+L V G + L G + G+ P+ L
Sbjct: 119 SEEEPAPSSLQPGSPASPGPGRRLCSL--DVLRGVRLELAGARRRLSEGKLVSRPRALLH 176
Query: 394 RKTGVESVSYFTGRGDEGRAQSHV-PADKWPSAPECYRQ---LGQMPVWGSTEVDEKPDS 449
G ++S R+ S PA + P+AP + G +P S KP
Sbjct: 177 GLRGHRALSLCPSPAQSPRSASPPGPAPQHPAAPASPPRPSTAGAIPPLRS----HKPTV 232
Query: 450 VLRWAPSSMMLQAGILERLVRPP----------ATPAPGDSPMILAAVDAPIMMDRLG 497
+R IL RPP ++PA P++ A + P+ LG
Sbjct: 233 AVR-----------ILPAPPRPPISSPGPIIWVSSPARSLGPLLHALLHPPLTCSHLG 279
>gi|239750857 PREDICTED: similar to ubiquitin-associated protein 1
(predicted) [Homo sapiens]
Length = 290
Score = 37.4 bits (85), Expect = 0.032
Identities = 59/238 (24%), Positives = 83/238 (34%), Gaps = 38/238 (15%)
Query: 281 GTGPLTCGRLASSAVHPGAQAAASPA-SQAAAPATCRICARSHPSVRSPPGEGEGEVLQL 339
G P CG +++ P SP A AP T R H GE E E
Sbjct: 59 GPSPYQCGDPGTASAPPAWLLLVSPEHGLAPAPTTIRDPEAGHQERPEEEGEDEAEASSG 118
Query: 340 LADTPGPEEKTPGRPSPFPPHLPFCALVETVHTGCQCALGGHQ----PGRF--PPQILEQ 393
+ P P PG P+ P C+L V G + L G + G+ P+ L
Sbjct: 119 SEEEPAPSSLQPGSPASPGPGRRLCSL--DVLRGVRLELAGARRRLSEGKLVSRPRALLH 176
Query: 394 RKTGVESVSYFTGRGDEGRAQSHV-PADKWPSAPECYRQ---LGQMPVWGSTEVDEKPDS 449
G ++S R+ S PA + P+AP + G +P S KP
Sbjct: 177 GLRGHRALSLCPSPAQSPRSASPPGPAPQHPAAPASPPRPSTAGAIPPLRS----HKPTV 232
Query: 450 VLRWAPSSMMLQAGILERLVRPP----------ATPAPGDSPMILAAVDAPIMMDRLG 497
+R IL RPP ++PA P++ A + P+ LG
Sbjct: 233 AVR-----------ILPAPPRPPISSPGPIIWVSSPARSLGPLLHALLHPPLTCSHLG 279
>gi|239745220 PREDICTED: hypothetical protein [Homo sapiens]
Length = 290
Score = 37.4 bits (85), Expect = 0.032
Identities = 59/238 (24%), Positives = 83/238 (34%), Gaps = 38/238 (15%)
Query: 281 GTGPLTCGRLASSAVHPGAQAAASPA-SQAAAPATCRICARSHPSVRSPPGEGEGEVLQL 339
G P CG +++ P SP A AP T R H GE E E
Sbjct: 59 GPSPYQCGDPGTASAPPAWLLLVSPEHGLAPAPTTIRDPEAGHQERPEEEGEDEAEASSG 118
Query: 340 LADTPGPEEKTPGRPSPFPPHLPFCALVETVHTGCQCALGGHQ----PGRF--PPQILEQ 393
+ P P PG P+ P C+L V G + L G + G+ P+ L
Sbjct: 119 SEEEPAPSSLQPGSPASPGPGRRLCSL--DVLRGVRLELAGARRRLSEGKLVSRPRALLH 176
Query: 394 RKTGVESVSYFTGRGDEGRAQSHV-PADKWPSAPECYRQ---LGQMPVWGSTEVDEKPDS 449
G ++S R+ S PA + P+AP + G +P S KP
Sbjct: 177 GLRGHRALSLCPSPAQSPRSASPPGPAPQHPAAPASPPRPSTAGAIPPLRS----HKPTV 232
Query: 450 VLRWAPSSMMLQAGILERLVRPP----------ATPAPGDSPMILAAVDAPIMMDRLG 497
+R IL RPP ++PA P++ A + P+ LG
Sbjct: 233 AVR-----------ILPAPPRPPISSPGPIIWVSSPARSLGPLLHALLHPPLTCSHLG 279
>gi|13540521 basic helix-loop-helix domain containing, class B, 3
[Homo sapiens]
Length = 482
Score = 37.4 bits (85), Expect = 0.032
Identities = 34/99 (34%), Positives = 40/99 (40%), Gaps = 9/99 (9%)
Query: 295 VHPGAQAAASPASQAAAPATCRICARSHPSVRSPPGEGEGEVLQLLADTPGPEEKTP-GR 353
++PG A A+ A+ AAA A SV SPP E G A T P E P G
Sbjct: 388 LYPGIPAPAAAAAAAAAAAAAAAAFPCLSSVLSPPPEKAGAA----AATLLPHEVAPLGA 443
Query: 354 PSPFPP----HLPFCALVETVHTGCQCALGGHQPGRFPP 388
P P P HLPF E + QPG+ P
Sbjct: 444 PHPQHPHGRTHLPFAGPREPGNPESSAQEDPSQPGKEAP 482
>gi|161019170 mucin 5AC [Homo sapiens]
Length = 6207
Score = 35.8 bits (81), Expect = 0.095
Identities = 56/180 (31%), Positives = 68/180 (37%), Gaps = 44/180 (24%)
Query: 208 TPSTSRKPSG--HQPAGPTGTCSGTHSARLRPGGPHTRGMPGSLRGARSQHCSLIRLACF 265
TPS+S + SG H P P T + TH L P PHT +R A + S I
Sbjct: 2812 TPSSSTQTSGTTHTPPVPN-TMATTHGRSLPPSSPHT------VRTAWTSATSGI----- 2859
Query: 266 RISVSPSRSFILRYLGTGPLTCGRLASSAVHPGAQAAASPASQAAAPATCRICARSHPSV 325
LGT +T S V AA + +Q + PA + HPS
Sbjct: 2860 --------------LGTTHIT----EPSTVTSHTLAATTGTTQHSTPA----LSSPHPSS 2897
Query: 326 R---SPPGEGEGEVLQLLADTPGPEEKTPG--RPSPFPPHLPFCALVETVHT-GC--QCA 377
R SPP G A + TP R S P P A + TV T GC QCA
Sbjct: 2898 RTTESPPSPGTTTPGHTTATSRTTATATPSKTRTSTLLPSSPTSAPITTVVTMGCEPQCA 2957
Score = 35.4 bits (80), Expect = 0.12
Identities = 55/180 (30%), Positives = 67/180 (37%), Gaps = 44/180 (24%)
Query: 208 TPSTSRKPSG--HQPAGPTGTCSGTHSARLRPGGPHTRGMPGSLRGARSQHCSLIRLACF 265
TPS+S + SG H P P T + TH L P PHT +R A + S I
Sbjct: 3959 TPSSSTQTSGTTHTPPVPNTTAT-THGRSLPPSSPHT------VRTAWTSATSGI----- 4006
Query: 266 RISVSPSRSFILRYLGTGPLTCGRLASSAVHPGAQAAASPASQAAAPATCRICARSHPSV 325
LGT +T S V AA + +Q + PA + HPS
Sbjct: 4007 --------------LGTTHIT----EPSTVTSHTPAATTSTTQHSTPA----LSSPHPSS 4044
Query: 326 R---SPPGEGEGEVLQLLADTPGPEEKTPG--RPSPFPPHLPFCALVET-VHTGC--QCA 377
R SPP G + TP R S P P A + T V TGC QCA
Sbjct: 4045 RTTESPPSPGTTTPGHTRGTSRTTATATPSKTRTSTLLPSSPTSAPITTVVTTGCEPQCA 4104
Score = 33.5 bits (75), Expect = 0.47
Identities = 54/180 (30%), Positives = 66/180 (36%), Gaps = 44/180 (24%)
Query: 208 TPSTSRKPSG--HQPAGPTGTCSGTHSARLRPGGPHTRGMPGSLRGARSQHCSLIRLACF 265
TPS+S + SG H P P T + TH L P PHT +R A
Sbjct: 4461 TPSSSTQTSGTTHTPPVPNTTAT-THGRSLSPSSPHT-----------------VRTAW- 4501
Query: 266 RISVSPSRSFILRYLGTGPLTCGRLASSAVHPGAQAAASPASQAAAPATCRICARSHPSV 325
S LGT +T +S AA + +Q + PA + HPS
Sbjct: 4502 -------TSATSGTLGTTHITEPSTGTS----HTPAATTGTTQHSTPA----LSSPHPSS 4546
Query: 326 R---SPPGEGEGEVLQLLADTPGPEEKTPG--RPSPFPPHLPFCALVET-VHTGC--QCA 377
R SPP G A + TP R S P P A + T V TGC QCA
Sbjct: 4547 RTTESPPSPGTTTPGHTTATSRTTATATPSKTRTSTLLPSSPTSAPITTVVTTGCEPQCA 4606
Score = 33.1 bits (74), Expect = 0.61
Identities = 35/124 (28%), Positives = 49/124 (39%), Gaps = 15/124 (12%)
Query: 208 TPSTSRKPSG--HQPAGPTGTCSGTHSARLRPGGPHTRGMPGSLRGARSQHCSLIRLACF 265
TPS+S + SG H P P T + TH L P PHT + + + + I
Sbjct: 3314 TPSSSTQTSGTTHTPPVPNTTAT-THGRSLSPSSPHTVRTAWTSATSGTLGTTHITEPST 3372
Query: 266 RISVSPSRSFILRYLGTGPLTCGRLASSAVHPGAQAAASPASQAAAP-----ATCRICAR 320
S +P+ + TG A S+ HP ++ SP S AT R A
Sbjct: 3373 GTSHTPAAT-------TGTTQHSTPALSSPHPSSRTTESPPSPGTTTPGHTRATSRTTAT 3425
Query: 321 SHPS 324
+ PS
Sbjct: 3426 ATPS 3429
>gi|48375167 microtubule-associated protein 6 isoform 2 [Homo
sapiens]
Length = 439
Score = 35.8 bits (81), Expect = 0.095
Identities = 25/81 (30%), Positives = 35/81 (43%), Gaps = 7/81 (8%)
Query: 284 PLTCGRLASSAVHPGAQAAASPASQAAAPATCRICARSHPSVRSPPGEGE-GEVLQLLAD 342
PL + + + HPGA P Q A PA AR+ ++ + P +GE V +
Sbjct: 27 PLVFTKYSEATEHPGAPPQPPPPQQQAQPALAPPSARA-VAIETQPAQGELDAVARATGP 85
Query: 343 TPGPEEKT-----PGRPSPFP 358
PGP + PGR P P
Sbjct: 86 APGPTGEREPAAGPGRSGPGP 106
>gi|48375173 microtubule-associated protein 6 isoform 1 [Homo
sapiens]
Length = 813
Score = 35.8 bits (81), Expect = 0.095
Identities = 25/81 (30%), Positives = 35/81 (43%), Gaps = 7/81 (8%)
Query: 284 PLTCGRLASSAVHPGAQAAASPASQAAAPATCRICARSHPSVRSPPGEGE-GEVLQLLAD 342
PL + + + HPGA P Q A PA AR+ ++ + P +GE V +
Sbjct: 27 PLVFTKYSEATEHPGAPPQPPPPQQQAQPALAPPSARA-VAIETQPAQGELDAVARATGP 85
Query: 343 TPGPEEKT-----PGRPSPFP 358
PGP + PGR P P
Sbjct: 86 APGPTGEREPAAGPGRSGPGP 106
>gi|5031587 adenomatosis polyposis coli 2 [Homo sapiens]
Length = 2303
Score = 35.8 bits (81), Expect = 0.095
Identities = 45/178 (25%), Positives = 61/178 (34%), Gaps = 25/178 (14%)
Query: 210 STSRKPSGHQPAGPTGTCSGTHSARLRPGGPHTRGMPGSL-RGARSQHCSLIRLACFRIS 268
S +R+P G PA P + S+ P PG+ R R + I + +
Sbjct: 2106 SVARRPDGAVPAAPASADAARRSSDGEPRPLPRVAAPGTTWRRIRDEDVPHILRSTLPAT 2165
Query: 269 VSPSRSFILRYLGTGPLTCGRLASSAVHPGAQAAASPASQAAAPATCRICARSHPSVRSP 328
P R GP R S AV + AA + + +P+ R P
Sbjct: 2166 ALPLRGSTPEDAPAGPPP--RKTSDAVVQTEEVAAPKTNSSTSPSL---------ETREP 2214
Query: 329 PGEGEGEVLQLL-ADTPGPEEKTPGRPSPFPPHLPFCALVETVHTGCQCALGGHQPGR 385
PG G L LL +D GP +PF VH G A+GG R
Sbjct: 2215 PGAPAGGQLSLLGSDVDGPSLAKAPISAPF------------VHEGLGVAVGGFPASR 2260
>gi|8400715 microtubule-associated protein tau isoform 4 [Homo
sapiens]
Length = 352
Score = 35.4 bits (80), Expect = 0.12
Identities = 43/161 (26%), Positives = 61/161 (37%), Gaps = 13/161 (8%)
Query: 300 QAAASPASQAAAPATCRICARSHPSVRSPPGEGE--------GEVLQLLADTPGPEEKTP 351
+ AA P + A AT RI A++ P+ ++PP GE G TPG +TP
Sbjct: 97 RGAAPPGQKGQANAT-RIPAKTPPAPKTPPSSGEPPKSGDRSGYSSPGSPGTPGSRSRTP 155
Query: 352 GRPSPFPPHLPFCALVETVHTGCQCALGGHQPGRFPPQILEQRKTGVESVSYFTGRGDEG 411
P+P A+V T A Q P L+ K+ + S + G
Sbjct: 156 SLPTPPTREPKKVAVVRTPPKSPSSAKSRLQTAPVPMPDLKNVKSKIGSTENLKHQPGGG 215
Query: 412 RAQ-SHVPADKWPSAPEC--YRQLGQMPVWGSTEV-DEKPD 448
+ Q + P D +C + P G EV EK D
Sbjct: 216 KVQIVYKPVDLSKVTSKCGSLGNIHHKPGGGQVEVKSEKLD 256
>gi|7656967 cadherin EGF LAG seven-pass G-type receptor 1 [Homo
sapiens]
Length = 3014
Score = 35.4 bits (80), Expect = 0.12
Identities = 57/180 (31%), Positives = 65/180 (36%), Gaps = 33/180 (18%)
Query: 207 GTPSTSRKPSGHQPAGPTGTCSGTHSARLRPGGPHTRGMPGSLR-GARSQHCSLIRLACF 265
G T R P G G +G R R G R +P +R ARS +L R
Sbjct: 53 GAACTPRAPRELLDVGRDGRLAG----RRRVSGAG-RPLPLQVRLVARSAPTALSRRLRA 107
Query: 266 RISVSPSRSFILRYLGTGPLTCGRLASSAVHPGAQAAASPASQAAAPAT---CRICARSH 322
R + P R GTG CG L PG AAA S AAP T CR R
Sbjct: 108 RTHL-PGCGARARLCGTGARLCGALCFPV--PGGCAAAQH-SALAAPTTLPACRCPPRPR 163
Query: 323 PS-----VRSPPG------------EGEGEV---LQLLADTPGPEEKTPGRPSPFPPHLP 362
P + PPG G V L L A T G +P P PP+LP
Sbjct: 164 PRCPGRPICLPPGGSVRLRLLCALRRAAGAVRVGLALEAATAGTPSASPSPSPPLPPNLP 223
>gi|146219843 Snf2-related CBP activator protein [Homo sapiens]
Length = 3230
Score = 35.4 bits (80), Expect = 0.12
Identities = 45/167 (26%), Positives = 59/167 (35%), Gaps = 20/167 (11%)
Query: 208 TPSTSRKPSGHQPAGPTGTCSGTHSARLRPGGPHTRGMPGSLRGARSQHCSLIRLACFRI 267
TP+ + + P GPT T S L P P P S G H + A
Sbjct: 1727 TPAQTLSLAPGPPLGPTQTLS------LAPAPPLA---PASPVGPAPAHTLTLAPASSSA 1777
Query: 268 SVSPSRSFILRYLGTGPL-TCGRLASSAVHPGAQAAASPASQAAAPATCRICARSHPSV- 325
S+ S L P+ T G A+ + + SPASQA++ A P
Sbjct: 1778 SLLAPASVQTLTLSPAPVPTLGPAAAQTLALAPASTQSPASQASSLVVSASGAAPLPVTM 1837
Query: 326 --RSPPGEGEGEVLQLLADTPGPEEKT-------PGRPSPFPPHLPF 363
R P + E + L L + P P P R P PP PF
Sbjct: 1838 VSRLPVSKDEPDTLTLRSGPPSPPSTATSFGGPRPRRQPPPPPRSPF 1884
>gi|30039694 zinc finger protein 598 [Homo sapiens]
Length = 904
Score = 35.4 bits (80), Expect = 0.12
Identities = 64/252 (25%), Positives = 95/252 (37%), Gaps = 21/252 (8%)
Query: 126 PEERSRMVDFPPYT--TLCFCRRLGDPGLGGLVYLCLPHTPTARLAQVAQAESQVLLVGV 183
P + + DFP + T C PG GL LP+ AR Q E LV
Sbjct: 436 PSPKLKDEDFPSLSASTSSSCSTAATPGPVGLA---LPYAIPARGRSAFQEEDFPALVSS 492
Query: 184 LLDLGGRGGALQFSDQALPSSHR-GTPSTSRKPSGH-QPAGPTGTCSGTHSARLRPGGPH 241
+ G +L + + SS + P S + +G QP G G+ R + G P
Sbjct: 493 VPKPGTAPTSLVSAWNSSSSSKKVAQPPLSAQATGSGQPTRKAG--KGSRGGR-KGGPPF 549
Query: 242 TR-----GMPGSLRGARSQHCSLIRLACFRISVSPSRSFILRYLGTGP--LTCGRLASSA 294
T+ G P ++ + S+ PS+ + +G+ T + +
Sbjct: 550 TQEEEEDGGPALQELLSTRPTGSVSSTLGLASIQPSKVGKKKKVGSEKPGTTLPQPPPAT 609
Query: 295 VHPGA-QAAASPASQAAAPATCRICARSH--PSVRSPPGEGEGEVLQLLA-DTPGPEEKT 350
PGA QA +PAS+A P + + RS P E G L + P P+E
Sbjct: 610 CPPGALQAPEAPASRAEGPVAVVVNGHTEGPAPARSAPKEPPGLPRPLGSFPCPTPQEDF 669
Query: 351 PGRPSPFPPHLP 362
P P PP +P
Sbjct: 670 PALGGPCPPRMP 681
>gi|6754638 microtubule-associated protein tau isoform 2 [Homo
sapiens]
Length = 441
Score = 35.0 bits (79), Expect = 0.16
Identities = 33/123 (26%), Positives = 48/123 (39%), Gaps = 9/123 (7%)
Query: 300 QAAASPASQAAAPATCRICARSHPSVRSPPGEGE--------GEVLQLLADTPGPEEKTP 351
+ AA P + A AT RI A++ P+ ++PP GE G TPG +TP
Sbjct: 155 RGAAPPGQKGQANAT-RIPAKTPPAPKTPPSSGEPPKSGDRSGYSSPGSPGTPGSRSRTP 213
Query: 352 GRPSPFPPHLPFCALVETVHTGCQCALGGHQPGRFPPQILEQRKTGVESVSYFTGRGDEG 411
P+P A+V T A Q P L+ K+ + S + G
Sbjct: 214 SLPTPPTREPKKVAVVRTPPKSPSSAKSRLQTAPVPMPDLKNVKSKIGSTENLKHQPGGG 273
Query: 412 RAQ 414
+ Q
Sbjct: 274 KVQ 276
>gi|8400711 microtubule-associated protein tau isoform 3 [Homo
sapiens]
Length = 383
Score = 35.0 bits (79), Expect = 0.16
Identities = 33/123 (26%), Positives = 48/123 (39%), Gaps = 9/123 (7%)
Query: 300 QAAASPASQAAAPATCRICARSHPSVRSPPGEGE--------GEVLQLLADTPGPEEKTP 351
+ AA P + A AT RI A++ P+ ++PP GE G TPG +TP
Sbjct: 97 RGAAPPGQKGQANAT-RIPAKTPPAPKTPPSSGEPPKSGDRSGYSSPGSPGTPGSRSRTP 155
Query: 352 GRPSPFPPHLPFCALVETVHTGCQCALGGHQPGRFPPQILEQRKTGVESVSYFTGRGDEG 411
P+P A+V T A Q P L+ K+ + S + G
Sbjct: 156 SLPTPPTREPKKVAVVRTPPKSPSSAKSRLQTAPVPMPDLKNVKSKIGSTENLKHQPGGG 215
Query: 412 RAQ 414
+ Q
Sbjct: 216 KVQ 218
>gi|82534351 microtubule-associated protein tau isoform 1 [Homo
sapiens]
Length = 758
Score = 35.0 bits (79), Expect = 0.16
Identities = 33/123 (26%), Positives = 48/123 (39%), Gaps = 9/123 (7%)
Query: 300 QAAASPASQAAAPATCRICARSHPSVRSPPGEGE--------GEVLQLLADTPGPEEKTP 351
+ AA P + A AT RI A++ P+ ++PP GE G TPG +TP
Sbjct: 472 RGAAPPGQKGQANAT-RIPAKTPPAPKTPPSSGEPPKSGDRSGYSSPGSPGTPGSRSRTP 530
Query: 352 GRPSPFPPHLPFCALVETVHTGCQCALGGHQPGRFPPQILEQRKTGVESVSYFTGRGDEG 411
P+P A+V T A Q P L+ K+ + S + G
Sbjct: 531 SLPTPPTREPKKVAVVRTPPKSPSSAKSRLQTAPVPMPDLKNVKSKIGSTENLKHQPGGG 590
Query: 412 RAQ 414
+ Q
Sbjct: 591 KVQ 593
>gi|178557736 microtubule-associated protein tau isoform 5 [Homo
sapiens]
Length = 412
Score = 35.0 bits (79), Expect = 0.16
Identities = 33/123 (26%), Positives = 48/123 (39%), Gaps = 9/123 (7%)
Query: 300 QAAASPASQAAAPATCRICARSHPSVRSPPGEGE--------GEVLQLLADTPGPEEKTP 351
+ AA P + A AT RI A++ P+ ++PP GE G TPG +TP
Sbjct: 126 RGAAPPGQKGQANAT-RIPAKTPPAPKTPPSSGEPPKSGDRSGYSSPGSPGTPGSRSRTP 184
Query: 352 GRPSPFPPHLPFCALVETVHTGCQCALGGHQPGRFPPQILEQRKTGVESVSYFTGRGDEG 411
P+P A+V T A Q P L+ K+ + S + G
Sbjct: 185 SLPTPPTREPKKVAVVRTPPKSPSSAKSRLQTAPVPMPDLKNVKSKIGSTENLKHQPGGG 244
Query: 412 RAQ 414
+ Q
Sbjct: 245 KVQ 247
>gi|190014636 hypothetical protein LOC286262 isoform 2 [Homo
sapiens]
Length = 678
Score = 34.7 bits (78), Expect = 0.21
Identities = 53/205 (25%), Positives = 69/205 (33%), Gaps = 33/205 (16%)
Query: 161 PHTPTARLAQVAQAESQVLLVGVLLDLGGRGGALQFSDQALPSSHRGTPSTSRKPSGHQP 220
P P AQ+ AE VL+ G G L+ D RG+P +R P P
Sbjct: 47 PAPPAPGAAQIRAAE--VLVYGA--PPGRVSRLLERFDPPAAPRRRGSPERARPPPPPPP 102
Query: 221 AGPTGTCSGTHSARLRPGGPHTRGMPGSLRGARSQHCSLIRLACFRISVSPSRSFILRYL 280
P R P P PG G S R + F + + S SF +
Sbjct: 103 PAP---------PRPPPAAPSPPAAPGPRGGGASPGA---RRSDF-LQKTGSNSFTVHPR 149
Query: 281 GTGPLTCGRLASSAVHPGAQAAASPASQAAAPATCRICARSHPSVRSPPGEGEGEVLQLL 340
G RL S+ H + A PA++ A SPPG G+ +
Sbjct: 150 GLHRGAGARLLSNG-HSAPEPRAGPANRLAG---------------SPPGSGQWKPKVES 193
Query: 341 ADTPGPEEKTPGRPSPFPPHLPFCA 365
D +PG PS P P A
Sbjct: 194 GDPSLHPPPSPGTPSATPASPPASA 218
>gi|190014638 hypothetical protein LOC286262 isoform 1 [Homo
sapiens]
Length = 650
Score = 34.7 bits (78), Expect = 0.21
Identities = 53/205 (25%), Positives = 69/205 (33%), Gaps = 33/205 (16%)
Query: 161 PHTPTARLAQVAQAESQVLLVGVLLDLGGRGGALQFSDQALPSSHRGTPSTSRKPSGHQP 220
P P AQ+ AE VL+ G G L+ D RG+P +R P P
Sbjct: 47 PAPPAPGAAQIRAAE--VLVYGA--PPGRVSRLLERFDPPAAPRRRGSPERARPPPPPPP 102
Query: 221 AGPTGTCSGTHSARLRPGGPHTRGMPGSLRGARSQHCSLIRLACFRISVSPSRSFILRYL 280
P R P P PG G S R + F + + S SF +
Sbjct: 103 PAP---------PRPPPAAPSPPAAPGPRGGGASPGA---RRSDF-LQKTGSNSFTVHPR 149
Query: 281 GTGPLTCGRLASSAVHPGAQAAASPASQAAAPATCRICARSHPSVRSPPGEGEGEVLQLL 340
G RL S+ H + A PA++ A SPPG G+ +
Sbjct: 150 GLHRGAGARLLSNG-HSAPEPRAGPANRLAG---------------SPPGSGQWKPKVES 193
Query: 341 ADTPGPEEKTPGRPSPFPPHLPFCA 365
D +PG PS P P A
Sbjct: 194 GDPSLHPPPSPGTPSATPASPPASA 218
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 34.7 bits (78), Expect = 0.21
Identities = 48/203 (23%), Positives = 67/203 (33%), Gaps = 34/203 (16%)
Query: 156 VYLCLPHTPTARLAQVAQAESQVLLVGVLLDLGGRGGALQFSDQALPSSHRGTPSTSRKP 215
V L P TPTA +A A + L AL + P + PS+SR P
Sbjct: 2282 VNLADPRTPTAPAVNLAGARTPAALA-----------ALSLTGSGTPPTAANYPSSSRTP 2330
Query: 216 SGHQPAGPTGTCSGTHSARLRPGGPHTRG--MPGSLRGARSQHCSLIRLACFRISVSPSR 273
A G S +A + G T P SL AR ++P+
Sbjct: 2331 QAPASANLVGPRSAHATAPVNIAGSRTAAALAPASLTSAR---------------MAPAL 2375
Query: 274 SFILRYLGTGPLTCGRLASSAVHPGAQAAASPASQAAAPATCRICARSHPSVRSPPGEGE 333
S PL+ S P A + +AP+ R+ + PS S G+
Sbjct: 2376 SGANLTSPRVPLSAYERVSGRTSPPLLDRARSRTPPSAPSQSRMTSERAPSPSSRMGQAP 2435
Query: 334 GEVLQLLADTPGPEEKTPGRPSP 356
+ L P + P P P
Sbjct: 2436 SQSLL------PPAQDQPRSPVP 2452
Score = 30.8 bits (68), Expect = 3.0
Identities = 45/172 (26%), Positives = 65/172 (37%), Gaps = 23/172 (13%)
Query: 202 PSSHRGTPSTSRKPSGHQPAGPTGTCSGTHSARLRPGGPH-TRGMPGSLRGARSQHCSLI 260
P + RG S +R P PA + SG+ S R R P TR GS + + S
Sbjct: 2059 PRTARGKRSLTRSP----PAIRRRSASGSSSDRSRSATPPATRNHSGSRTPPVALNSS-- 2112
Query: 261 RLACF-RISVSPSRSFILRYLGT-GPLTCGRLASSAVH--------------PGAQAAAS 304
R++CF R S+SP+ R G PL R S + P Q +
Sbjct: 2113 RMSCFSRPSMSPTPLDRCRSPGMLEPLGSSRTPMSVLQQAGGSMMDGPGPRIPDHQRTSV 2172
Query: 305 PASQAAAPATCRICARSHPSVRSPPGEGEGEVLQLLADTPGPEEKTPGRPSP 356
P + A + + A S + R PP + ++ P P R +P
Sbjct: 2173 PENHAQSRIALALTAISLGTARPPPSMSAAGLAARMSQVPAPVPLMSLRTAP 2224
>gi|169211815 PREDICTED: keratin associated protein 4.6 [Homo
sapiens]
Length = 288
Score = 34.3 bits (77), Expect = 0.28
Identities = 43/187 (22%), Positives = 64/187 (34%), Gaps = 23/187 (12%)
Query: 209 PSTSRKPSGHQPAG-PTGTC------SGTHSARLRPGGPHTRGMPGSLRGARSQHCSLIR 261
P+ R P+ PA P C S P +P ++R + +
Sbjct: 102 PAAVRPPAAGPPAAAPAAVCPAAADPSAASLCAASPPAAVPAAVPAAVRPPAAGPPAAAL 161
Query: 262 LACFRISVSPSRSFILRYLGTGPLTCGRLASSAVHPGAQAAASPASQAAAPATCRICARS 321
A + + PS + + PL A+S P A A A+ AA P+ +CA S
Sbjct: 162 AAVYPAAADPSAASLC---AASPLAAVPAAAS---PAAVAPAAVCPGAAGPSAASLCAAS 215
Query: 322 HPSVRSPPGEGEGEVLQLLADTPGPEEKTPGRPSPFPPHLPFCALVETVHTGCQCALGGH 381
P+ + P LA P + P+ A V++V L
Sbjct: 216 QPA--AVPAAASPAAAAPLAVNPAAAARAAAAPA--------AACVQSVAESPATPLAIA 265
Query: 382 QPGRFPP 388
QP FPP
Sbjct: 266 QPVSFPP 272
>gi|239754940 PREDICTED: hypothetical protein [Homo sapiens]
Length = 159
Score = 33.9 bits (76), Expect = 0.36
Identities = 27/82 (32%), Positives = 33/82 (40%), Gaps = 18/82 (21%)
Query: 299 AQAAASPASQAAAPATCRICA--RSHPSVRSP--PGEGEGEVLQLL-------------- 340
A AAA P + PA R+ A + P RSP G G G++ L
Sbjct: 51 APAAAHPPAPRERPAAARLSALAAAQPRRRSPGPQGGGGGDIASPLPPALQPRGAPAVPA 110
Query: 341 ADTPGPEEKTPGRPSPFPPHLP 362
A +PGP P P P PP P
Sbjct: 111 APSPGPLPARPSSPPPSPPSPP 132
>gi|19924099 synapsin I isoform Ia [Homo sapiens]
Length = 705
Score = 33.9 bits (76), Expect = 0.36
Identities = 53/195 (27%), Positives = 67/195 (34%), Gaps = 50/195 (25%)
Query: 173 QAESQVLLVGVLLDLGGRGGALQFSDQALPS--SHRGTPSTSRKPSGHQ----PAGPTGT 226
Q E + L+V ++++ + Q A P SH TPS P G Q PAGP
Sbjct: 399 QDEDKQLIVELVVNKMAQALPRQRQRDASPGRGSHGQTPSPGALPLGRQTSQQPAGPP-- 456
Query: 227 CSGTHSARLRP---GGPHTRGMPGSLRGARSQHCSLIRLACFRISVSPSRSFILRYLGTG 283
A+ RP GGP G +G Q P G G
Sbjct: 457 ------AQQRPPPQGGPPQPGPGPQRQGPPLQQ-------------RPPPQGQQHLSGLG 497
Query: 284 PLTCGRLASSAVHPGAQAAASPASQAAAPATCRICARSHPSVRSPPGEGEGEVLQLLADT 343
P L P A PASQAA PP +G+G + +A
Sbjct: 498 PPAGSPLPQRLPSP-TSAPQQPASQAA-----------------PPTQGQGRQSRPVAGG 539
Query: 344 PG--PEEKTPGRPSP 356
PG P + P PSP
Sbjct: 540 PGAPPAARPPASPSP 554
>gi|19924097 synapsin I isoform Ib [Homo sapiens]
Length = 669
Score = 33.9 bits (76), Expect = 0.36
Identities = 53/195 (27%), Positives = 67/195 (34%), Gaps = 50/195 (25%)
Query: 173 QAESQVLLVGVLLDLGGRGGALQFSDQALPS--SHRGTPSTSRKPSGHQ----PAGPTGT 226
Q E + L+V ++++ + Q A P SH TPS P G Q PAGP
Sbjct: 399 QDEDKQLIVELVVNKMAQALPRQRQRDASPGRGSHGQTPSPGALPLGRQTSQQPAGPP-- 456
Query: 227 CSGTHSARLRP---GGPHTRGMPGSLRGARSQHCSLIRLACFRISVSPSRSFILRYLGTG 283
A+ RP GGP G +G Q P G G
Sbjct: 457 ------AQQRPPPQGGPPQPGPGPQRQGPPLQQ-------------RPPPQGQQHLSGLG 497
Query: 284 PLTCGRLASSAVHPGAQAAASPASQAAAPATCRICARSHPSVRSPPGEGEGEVLQLLADT 343
P L P A PASQAA PP +G+G + +A
Sbjct: 498 PPAGSPLPQRLPSP-TSAPQQPASQAA-----------------PPTQGQGRQSRPVAGG 539
Query: 344 PG--PEEKTPGRPSP 356
PG P + P PSP
Sbjct: 540 PGAPPAARPPASPSP 554
Score = 31.6 bits (70), Expect = 1.8
Identities = 37/148 (25%), Positives = 49/148 (33%), Gaps = 19/148 (12%)
Query: 188 GGRGGALQFSDQALPSSHR--GTPSTSRKPSGHQPAGPTGTCSGTHSARLRPGGPHTRGM 245
GG G A PS R G P +R+ S PA P + + R G P
Sbjct: 538 GGPGAPPAARPPASPSPQRQAGPPQATRQTSVSGPAPPKAS-GAPPGGQQRQGPPQKPPG 596
Query: 246 PGSLRGARSQHCSLIRLACFRISVSPSRSFILRYLGTGPLTCGRLASSAVHPGAQAAASP 305
P SQ + R P + R G GP A P Q A P
Sbjct: 597 PAGPTRQASQAGPVPR-------TGPPTTQQPRPSGPGP---------AGRPKPQLAQKP 640
Query: 306 ASQAAAPATCRICARSHPSVRSPPGEGE 333
+ PAT HP +++ P + +
Sbjct: 641 SQDVPPPATAAAGGPPHPQLKASPAQAQ 668
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.133 0.417
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,162,527
Number of Sequences: 37866
Number of extensions: 1469298
Number of successful extensions: 7252
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 221
Number of HSP's that attempted gapping in prelim test: 6933
Number of HSP's gapped (non-prelim): 532
length of query: 508
length of database: 18,247,518
effective HSP length: 107
effective length of query: 401
effective length of database: 14,195,856
effective search space: 5692538256
effective search space used: 5692538256
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.