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Search of human proteins with 239746322
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239746322 PREDICTED: hypothetical protein XP_002343729 [Homo
sapiens]
(221 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239746322 PREDICTED: hypothetical protein XP_002343729 [Homo ... 468 e-132
gi|239757324 PREDICTED: hypothetical protein XP_002345241 [Homo ... 452 e-127
gi|239751831 PREDICTED: hypothetical protein XP_002348009 [Homo ... 452 e-127
gi|239746324 PREDICTED: hypothetical protein XP_002343730 [Homo ... 91 8e-19
gi|239757352 PREDICTED: similar to LMARRLC1A [Homo sapiens] 59 3e-09
gi|239751859 PREDICTED: similar to LMARRLC1A [Homo sapiens] 59 4e-09
gi|239746350 PREDICTED: hypothetical protein XP_002343735 [Homo ... 59 4e-09
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 38 0.006
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom... 38 0.006
gi|239754060 PREDICTED: hypothetical protein [Homo sapiens] 34 0.11
gi|239748587 PREDICTED: hypothetical protein XP_002346734 [Homo ... 34 0.11
gi|239742606 PREDICTED: hypothetical protein XP_002342570 [Homo ... 34 0.11
gi|17402888 neuronal pentraxin receptor [Homo sapiens] 33 0.15
gi|4504487 histidine rich calcium binding protein precursor [Hom... 33 0.15
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 33 0.19
gi|4502805 chromogranin A precursor [Homo sapiens] 33 0.25
gi|239755232 PREDICTED: hypothetical protein [Homo sapiens] 32 0.33
gi|239749768 PREDICTED: hypothetical protein [Homo sapiens] 32 0.33
gi|239744027 PREDICTED: hypothetical protein XP_002343007 [Homo ... 32 0.33
gi|78190492 retinitis pigmentosa GTPase regulator isoform C [Hom... 32 0.33
gi|239754006 PREDICTED: hypothetical protein [Homo sapiens] 31 0.73
gi|239748537 PREDICTED: hypothetical protein [Homo sapiens] 31 0.73
gi|239742520 PREDICTED: hypothetical protein [Homo sapiens] 31 0.73
gi|63025206 hypothetical protein LOC221061 [Homo sapiens] 31 0.73
gi|239742114 PREDICTED: similar to hCG2023245 [Homo sapiens] 31 0.96
gi|32140760 collagen, type XXVII, alpha 1 [Homo sapiens] 31 0.96
gi|42476101 TFIIA alpha, p55 isoform 2 [Homo sapiens] 31 0.96
gi|7706735 TFIIA alpha, p55 isoform 1 [Homo sapiens] 31 0.96
gi|32307177 forkhead box G1 [Homo sapiens] 31 0.96
gi|40068464 AT rich interactive domain 1B (SWI1-like) isoform 2 ... 31 0.96
>gi|239746322 PREDICTED: hypothetical protein XP_002343729 [Homo
sapiens]
Length = 221
Score = 468 bits (1203), Expect = e-132
Identities = 221/221 (100%), Positives = 221/221 (100%)
Query: 1 MATARSRRDPGQASPSEVLAPDGFKHQQKAVGADGGQEQDAGVHVEQDEGGQDAAGGPAK 60
MATARSRRDPGQASPSEVLAPDGFKHQQKAVGADGGQEQDAGVHVEQDEGGQDAAGGPAK
Sbjct: 1 MATARSRRDPGQASPSEVLAPDGFKHQQKAVGADGGQEQDAGVHVEQDEGGQDAAGGPAK 60
Query: 61 GPVVMLYNGREQDGQRQAGEEVGYRQVEEPDGIDGPLGLECRHPDHQGIAQHSHQEDDCK 120
GPVVMLYNGREQDGQRQAGEEVGYRQVEEPDGIDGPLGLECRHPDHQGIAQHSHQEDDCK
Sbjct: 61 GPVVMLYNGREQDGQRQAGEEVGYRQVEEPDGIDGPLGLECRHPDHQGIAQHSHQEDDCK 120
Query: 121 DDQGQDVWNTQRVRSFIHRGVEVQGILVIIVPIIRGGIIEGTHHVLVSWAPRGSKVPPAQ 180
DDQGQDVWNTQRVRSFIHRGVEVQGILVIIVPIIRGGIIEGTHHVLVSWAPRGSKVPPAQ
Sbjct: 121 DDQGQDVWNTQRVRSFIHRGVEVQGILVIIVPIIRGGIIEGTHHVLVSWAPRGSKVPPAQ 180
Query: 181 GLWFLKPQGKMQGGNDRLSLWGSHWKWASIVPSRQPTEIPG 221
GLWFLKPQGKMQGGNDRLSLWGSHWKWASIVPSRQPTEIPG
Sbjct: 181 GLWFLKPQGKMQGGNDRLSLWGSHWKWASIVPSRQPTEIPG 221
>gi|239757324 PREDICTED: hypothetical protein XP_002345241 [Homo
sapiens]
Length = 582
Score = 452 bits (1162), Expect = e-127
Identities = 212/213 (99%), Positives = 212/213 (99%)
Query: 9 DPGQASPSEVLAPDGFKHQQKAVGADGGQEQDAGVHVEQDEGGQDAAGGPAKGPVVMLYN 68
DPGQA PSEVLAPDGFKHQQKAVGADGGQEQDAGVHVEQDEGGQDAAGGPAKGPVVMLYN
Sbjct: 370 DPGQAGPSEVLAPDGFKHQQKAVGADGGQEQDAGVHVEQDEGGQDAAGGPAKGPVVMLYN 429
Query: 69 GREQDGQRQAGEEVGYRQVEEPDGIDGPLGLECRHPDHQGIAQHSHQEDDCKDDQGQDVW 128
GREQDGQRQAGEEVGYRQVEEPDGIDGPLGLECRHPDHQGIAQHSHQEDDCKDDQGQDVW
Sbjct: 430 GREQDGQRQAGEEVGYRQVEEPDGIDGPLGLECRHPDHQGIAQHSHQEDDCKDDQGQDVW 489
Query: 129 NTQRVRSFIHRGVEVQGILVIIVPIIRGGIIEGTHHVLVSWAPRGSKVPPAQGLWFLKPQ 188
NTQRVRSFIHRGVEVQGILVIIVPIIRGGIIEGTHHVLVSWAPRGSKVPPAQGLWFLKPQ
Sbjct: 490 NTQRVRSFIHRGVEVQGILVIIVPIIRGGIIEGTHHVLVSWAPRGSKVPPAQGLWFLKPQ 549
Query: 189 GKMQGGNDRLSLWGSHWKWASIVPSRQPTEIPG 221
GKMQGGNDRLSLWGSHWKWASIVPSRQPTEIPG
Sbjct: 550 GKMQGGNDRLSLWGSHWKWASIVPSRQPTEIPG 582
Score = 90.9 bits (224), Expect = 8e-19
Identities = 53/142 (37%), Positives = 70/142 (49%), Gaps = 3/142 (2%)
Query: 13 ASPSEVLAPDGFKHQQKAVGADGGQEQDAGVHVEQDEGGQDAAGGPAKGPVVMLYNGREQ 72
A P P + Q+ VG + QEQDAG+H +QD+GGQ PV NG Q
Sbjct: 160 ARPLNRRPPGRPESQEAEVGTESCQEQDAGIHGQQDDGGQRPTAHCTIRPVASTGNGHCQ 219
Query: 73 DGQRQAGEEVGYRQVEEPDGIDGPLGLECRHPDHQGIAQHSHQED---DCKDDQGQDVWN 129
DGQRQ +++ + QVE+P G P G HP H GIA+H HQED + Q V
Sbjct: 220 DGQRQTAQQIRHGQVEQPGGTHPPAGHLPSHPGHHGIARHPHQEDGGIQWERGHAQRVDG 279
Query: 130 TQRVRSFIHRGVEVQGILVIIV 151
+HR V ++ I+V
Sbjct: 280 QAGAIQAVHRAVREVAVIPILV 301
>gi|239751831 PREDICTED: hypothetical protein XP_002348009 [Homo
sapiens]
Length = 589
Score = 452 bits (1162), Expect = e-127
Identities = 212/213 (99%), Positives = 212/213 (99%)
Query: 9 DPGQASPSEVLAPDGFKHQQKAVGADGGQEQDAGVHVEQDEGGQDAAGGPAKGPVVMLYN 68
DPGQA PSEVLAPDGFKHQQKAVGADGGQEQDAGVHVEQDEGGQDAAGGPAKGPVVMLYN
Sbjct: 377 DPGQAGPSEVLAPDGFKHQQKAVGADGGQEQDAGVHVEQDEGGQDAAGGPAKGPVVMLYN 436
Query: 69 GREQDGQRQAGEEVGYRQVEEPDGIDGPLGLECRHPDHQGIAQHSHQEDDCKDDQGQDVW 128
GREQDGQRQAGEEVGYRQVEEPDGIDGPLGLECRHPDHQGIAQHSHQEDDCKDDQGQDVW
Sbjct: 437 GREQDGQRQAGEEVGYRQVEEPDGIDGPLGLECRHPDHQGIAQHSHQEDDCKDDQGQDVW 496
Query: 129 NTQRVRSFIHRGVEVQGILVIIVPIIRGGIIEGTHHVLVSWAPRGSKVPPAQGLWFLKPQ 188
NTQRVRSFIHRGVEVQGILVIIVPIIRGGIIEGTHHVLVSWAPRGSKVPPAQGLWFLKPQ
Sbjct: 497 NTQRVRSFIHRGVEVQGILVIIVPIIRGGIIEGTHHVLVSWAPRGSKVPPAQGLWFLKPQ 556
Query: 189 GKMQGGNDRLSLWGSHWKWASIVPSRQPTEIPG 221
GKMQGGNDRLSLWGSHWKWASIVPSRQPTEIPG
Sbjct: 557 GKMQGGNDRLSLWGSHWKWASIVPSRQPTEIPG 589
Score = 90.9 bits (224), Expect = 8e-19
Identities = 53/142 (37%), Positives = 70/142 (49%), Gaps = 3/142 (2%)
Query: 13 ASPSEVLAPDGFKHQQKAVGADGGQEQDAGVHVEQDEGGQDAAGGPAKGPVVMLYNGREQ 72
A P P + Q+ VG + QEQDAG+H +QD+GGQ PV NG Q
Sbjct: 167 ARPLNRRPPGRPESQEAEVGTESCQEQDAGIHGQQDDGGQRPTAHCTIRPVASTGNGHCQ 226
Query: 73 DGQRQAGEEVGYRQVEEPDGIDGPLGLECRHPDHQGIAQHSHQED---DCKDDQGQDVWN 129
DGQRQ +++ + QVE+P G P G HP H GIA+H HQED + Q V
Sbjct: 227 DGQRQTAQQIRHGQVEQPGGTHPPAGHLPSHPGHHGIARHPHQEDGGIQWERGHAQRVDG 286
Query: 130 TQRVRSFIHRGVEVQGILVIIV 151
+HR V ++ I+V
Sbjct: 287 QAGAIQAVHRAVREVAVIPILV 308
>gi|239746324 PREDICTED: hypothetical protein XP_002343730 [Homo
sapiens]
Length = 329
Score = 90.9 bits (224), Expect = 8e-19
Identities = 53/142 (37%), Positives = 70/142 (49%), Gaps = 3/142 (2%)
Query: 13 ASPSEVLAPDGFKHQQKAVGADGGQEQDAGVHVEQDEGGQDAAGGPAKGPVVMLYNGREQ 72
A P P + Q+ VG + QEQDAG+H +QD+GGQ PV NG Q
Sbjct: 167 ARPLNRRPPGRPESQEAEVGTESCQEQDAGIHGQQDDGGQRPTAHCTIRPVASTGNGHCQ 226
Query: 73 DGQRQAGEEVGYRQVEEPDGIDGPLGLECRHPDHQGIAQHSHQED---DCKDDQGQDVWN 129
DGQRQ +++ + QVE+P G P G HP H GIA+H HQED + Q V
Sbjct: 227 DGQRQTAQQIRHGQVEQPGGTHPPAGHLPSHPGHHGIARHPHQEDGGIQWERGHAQRVDG 286
Query: 130 TQRVRSFIHRGVEVQGILVIIV 151
+HR V ++ I+V
Sbjct: 287 QAGAIQAVHRAVREVAVIPILV 308
>gi|239757352 PREDICTED: similar to LMARRLC1A [Homo sapiens]
Length = 279
Score = 59.3 bits (142), Expect = 3e-09
Identities = 36/117 (30%), Positives = 55/117 (47%)
Query: 11 GQASPSEVLAPDGFKHQQKAVGADGGQEQDAGVHVEQDEGGQDAAGGPAKGPVVMLYNGR 70
GQA + VL PD + AV ++ G ++D V+ G ++ A PA+ P+
Sbjct: 134 GQAHGAVVLGPDWMQDANTAVQSNEGDQEDTSEQVDVHYGKEEFAQEPAERPMSSHGLPD 193
Query: 71 EQDGQRQAGEEVGYRQVEEPDGIDGPLGLECRHPDHQGIAQHSHQEDDCKDDQGQDV 127
++ Q EV + QV+ DG D E HPDH+ +AQ + DCK D+
Sbjct: 194 HEEWQSGGETEVSHGQVQVTDGGDCVCHPESSHPDHKPVAQDPEDKGDCKYQISDDI 250
>gi|239751859 PREDICTED: similar to LMARRLC1A [Homo sapiens]
Length = 279
Score = 58.5 bits (140), Expect = 4e-09
Identities = 36/117 (30%), Positives = 54/117 (46%)
Query: 11 GQASPSEVLAPDGFKHQQKAVGADGGQEQDAGVHVEQDEGGQDAAGGPAKGPVVMLYNGR 70
GQA + VL PD + AV ++ G ++D V+ G + A PA+ P+
Sbjct: 134 GQAHGAVVLGPDWMQDANTAVQSNEGDQEDTSEQVDVHYGKDEFAQEPAERPMSSHGLPD 193
Query: 71 EQDGQRQAGEEVGYRQVEEPDGIDGPLGLECRHPDHQGIAQHSHQEDDCKDDQGQDV 127
++ Q EV + QV+ DG D E HPDH+ +AQ + DCK D+
Sbjct: 194 HEEWQSGGETEVSHGQVQVTDGGDCVCHPESSHPDHKPVAQDPEDKGDCKYQISDDI 250
>gi|239746350 PREDICTED: hypothetical protein XP_002343735 [Homo
sapiens]
Length = 279
Score = 58.5 bits (140), Expect = 4e-09
Identities = 36/117 (30%), Positives = 54/117 (46%)
Query: 11 GQASPSEVLAPDGFKHQQKAVGADGGQEQDAGVHVEQDEGGQDAAGGPAKGPVVMLYNGR 70
GQA + VL PD + AV ++ G ++D V+ G + A PA+ P+
Sbjct: 134 GQAHGAVVLGPDWMQDANTAVQSNEGDQEDTSEQVDVHYGKDEFAQEPAERPMSSHGLPD 193
Query: 71 EQDGQRQAGEEVGYRQVEEPDGIDGPLGLECRHPDHQGIAQHSHQEDDCKDDQGQDV 127
++ Q EV + QV+ DG D E HPDH+ +AQ + DCK D+
Sbjct: 194 HEEWQSGGETEVSHGQVQVTDGGDCVCHPESSHPDHKPVAQDPEDKGDCKYQISDDI 250
>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
sapiens]
Length = 1487
Score = 38.1 bits (87), Expect = 0.006
Identities = 33/119 (27%), Positives = 48/119 (40%), Gaps = 15/119 (12%)
Query: 7 RRDPGQASPSEVLAPDGFKHQQKAVGADGGQEQDAGVHVEQDEGGQDAAG-----GPAKG 61
R PG P + P G ++ + GADG +D V+ D G A G GP
Sbjct: 1016 RGPPGPVGPPGLTGPAGEPGREGSPGADGPPGRDGAAGVKGDRGETGAVGAPGAPGPPGS 1075
Query: 62 PVVMLYNGREQDGQRQAGEE--------VGYRQVEEPDGIDGPLGLECRHPDHQGIAQH 112
P G++ D + +AG + G R ++ P G G G E P +G+ H
Sbjct: 1076 PGPAGPTGKQGD-RGEAGAQGPMGPSGPAGARGIQGPQGPRGDKG-EAGEPGERGLKGH 1132
>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
sapiens]
Length = 1418
Score = 38.1 bits (87), Expect = 0.006
Identities = 33/119 (27%), Positives = 48/119 (40%), Gaps = 15/119 (12%)
Query: 7 RRDPGQASPSEVLAPDGFKHQQKAVGADGGQEQDAGVHVEQDEGGQDAAG-----GPAKG 61
R PG P + P G ++ + GADG +D V+ D G A G GP
Sbjct: 947 RGPPGPVGPPGLTGPAGEPGREGSPGADGPPGRDGAAGVKGDRGETGAVGAPGAPGPPGS 1006
Query: 62 PVVMLYNGREQDGQRQAGEE--------VGYRQVEEPDGIDGPLGLECRHPDHQGIAQH 112
P G++ D + +AG + G R ++ P G G G E P +G+ H
Sbjct: 1007 PGPAGPTGKQGD-RGEAGAQGPMGPSGPAGARGIQGPQGPRGDKG-EAGEPGERGLKGH 1063
>gi|239754060 PREDICTED: hypothetical protein [Homo sapiens]
Length = 277
Score = 33.9 bits (76), Expect = 0.11
Identities = 30/124 (24%), Positives = 48/124 (38%), Gaps = 6/124 (4%)
Query: 21 PDGFKHQQKAVGADGGQEQDAGVHVEQDEGGQDAAGGPAKGPVVMLYNGREQDGQRQAGE 80
P G + + G E++ VHV ++ + PVV +Y G+ E
Sbjct: 46 PHGVHDDPIPLHTEAGHEENGTVHVAIEKANKHITKSFPINPVVAMYVIGNLQGEPDDRE 105
Query: 81 EVGYRQVEEPDGIDG-PLGLECRHPDHQGIAQHSHQEDDC----KDDQGQDVWNTQRVRS 135
EV Q+ + L E + P + +H + +C K+D GQ + R R
Sbjct: 106 EVSQGQIGHVNHSRVLLLSSEKKDPQGHAVTWQTHHKHNCVDNWKEDSGQ-FSSEDRCRK 164
Query: 136 FIHR 139
IHR
Sbjct: 165 LIHR 168
>gi|239748587 PREDICTED: hypothetical protein XP_002346734 [Homo
sapiens]
Length = 277
Score = 33.9 bits (76), Expect = 0.11
Identities = 30/124 (24%), Positives = 48/124 (38%), Gaps = 6/124 (4%)
Query: 21 PDGFKHQQKAVGADGGQEQDAGVHVEQDEGGQDAAGGPAKGPVVMLYNGREQDGQRQAGE 80
P G + + G E++ VHV ++ + PVV +Y G+ E
Sbjct: 46 PHGVHDDPIPLHTEAGHEENGTVHVAIEKANKHITKSFPINPVVAMYVIGNLQGEPDDRE 105
Query: 81 EVGYRQVEEPDGIDG-PLGLECRHPDHQGIAQHSHQEDDC----KDDQGQDVWNTQRVRS 135
EV Q+ + L E + P + +H + +C K+D GQ + R R
Sbjct: 106 EVSQGQIGHVNHSRVLLLSSEKKDPQGHAVTWQTHHKHNCVDNWKEDSGQ-FSSEDRCRK 164
Query: 136 FIHR 139
IHR
Sbjct: 165 LIHR 168
>gi|239742606 PREDICTED: hypothetical protein XP_002342570 [Homo
sapiens]
Length = 277
Score = 33.9 bits (76), Expect = 0.11
Identities = 30/124 (24%), Positives = 48/124 (38%), Gaps = 6/124 (4%)
Query: 21 PDGFKHQQKAVGADGGQEQDAGVHVEQDEGGQDAAGGPAKGPVVMLYNGREQDGQRQAGE 80
P G + + G E++ VHV ++ + PVV +Y G+ E
Sbjct: 46 PHGVHDDPIPLHTEAGHEENGTVHVAIEKANKHITKSFPINPVVAMYVIGNLQGEPDDRE 105
Query: 81 EVGYRQVEEPDGIDG-PLGLECRHPDHQGIAQHSHQEDDC----KDDQGQDVWNTQRVRS 135
EV Q+ + L E + P + +H + +C K+D GQ + R R
Sbjct: 106 EVSQGQIGHVNHSRVLLLSSEKKDPQGHAVTWQTHHKHNCVDNWKEDSGQ-FSSEDRCRK 164
Query: 136 FIHR 139
IHR
Sbjct: 165 LIHR 168
>gi|17402888 neuronal pentraxin receptor [Homo sapiens]
Length = 500
Score = 33.5 bits (75), Expect = 0.15
Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 7/41 (17%)
Query: 161 GTHHVLVSWAPRGSKVPPAQGLWFLKPQGKMQGGNDRLSLW 201
G HH+ ++W R GLW G++QG + L+ W
Sbjct: 378 GWHHICIAWTTR-------DGLWSAYQDGELQGSGENLAAW 411
>gi|4504487 histidine rich calcium binding protein precursor [Homo
sapiens]
Length = 699
Score = 33.5 bits (75), Expect = 0.15
Identities = 36/142 (25%), Positives = 52/142 (36%), Gaps = 21/142 (14%)
Query: 5 RSRRDPGQASPSEVLAPDGFKHQQKAVGADGGQEQDAGVHVEQDEGGQDAAGGPAKGPVV 64
++ R G S + DG H + G +E D + D+ D V
Sbjct: 212 QAHRHRGHGSEEDEDVSDGHHHHGPSHRHQGHEEDDDDDDDDDDDDDDD--------DVS 263
Query: 65 MLYNGREQDGQRQAGEEVGYRQVEEPDGIDGPLGLECRHPDHQGIAQHSHQEDDCKDDQG 124
+ Y + QA G+ E+ D DG R P H+ SH+EDD DD
Sbjct: 264 IEY-------RHQAHRHQGHGIEEDEDVSDGH---HHRDPSHR---HRSHEEDDNDDDDV 310
Query: 125 QDVWNTQRVRSFIHRGVEVQGI 146
+ Q R HR EV+ +
Sbjct: 311 STEYGHQAHRHQDHRKEEVEAV 332
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 33.1 bits (74), Expect = 0.19
Identities = 29/101 (28%), Positives = 36/101 (35%), Gaps = 9/101 (8%)
Query: 7 RRDPGQASPSEVLAPDGFKHQQKAVGADGGQEQDAGVHVEQDEGGQDAAGGP-------A 59
R PG P + P G ++ A GA+G +D + D G AG P A
Sbjct: 994 RGPPGPMGPPGLAGPPGESGREGAPGAEGSPGRDGSPGAKGDRGETGPAGPPGAPGAPGA 1053
Query: 60 KGPV--VMLYNGREQDGQRQAGEEVGYRQVEEPDGIDGPLG 98
GPV R + G VG P G GP G
Sbjct: 1054 PGPVGPAGKSGDRGETGPAGPAGPVGPVGARGPAGPQGPRG 1094
>gi|4502805 chromogranin A precursor [Homo sapiens]
Length = 457
Score = 32.7 bits (73), Expect = 0.25
Identities = 29/121 (23%), Positives = 55/121 (45%), Gaps = 6/121 (4%)
Query: 2 ATARSRRDPG-QASPSEVLAPDGFKHQQKAVGADGG---QEQDAGVHVEQDEGGQDAAGG 57
A+ S++ PG QA G ++K + A+ G + ++ E+ E G++A
Sbjct: 187 ASLPSQKYPGPQAEGDSEGLSQGLVDREKGLSAEPGWQAKREEEEEEEEEAEAGEEAVP- 245
Query: 58 PAKGPVVMLYNGREQDGQRQAGEEVGYRQVEEPDGIDGPLGLECRHPDHQGIAQHSHQED 117
+GP V+L N G ++ + + DG P E + P+ +G +HS Q++
Sbjct: 246 EEEGPTVVL-NPHPSLGYKEIRKGESRSEALAVDGAGKPGAEEAQDPEGKGEQEHSQQKE 304
Query: 118 D 118
+
Sbjct: 305 E 305
>gi|239755232 PREDICTED: hypothetical protein [Homo sapiens]
Length = 501
Score = 32.3 bits (72), Expect = 0.33
Identities = 16/38 (42%), Positives = 24/38 (63%), Gaps = 3/38 (7%)
Query: 160 EGTHHVLVSWAPRGSKVPPAQGLWFLKPQGKMQGGNDR 197
E H++L + A RG + A LW L+P+ + QGG+DR
Sbjct: 370 EAPHYLLWAAAVRGQE---AHSLWPLQPRARRQGGSDR 404
>gi|239749768 PREDICTED: hypothetical protein [Homo sapiens]
Length = 591
Score = 32.3 bits (72), Expect = 0.33
Identities = 16/38 (42%), Positives = 24/38 (63%), Gaps = 3/38 (7%)
Query: 160 EGTHHVLVSWAPRGSKVPPAQGLWFLKPQGKMQGGNDR 197
E H++L + A RG + A LW L+P+ + QGG+DR
Sbjct: 460 EAPHYLLWAAAVRGQE---AHSLWPLQPRARRQGGSDR 494
>gi|239744027 PREDICTED: hypothetical protein XP_002343007 [Homo
sapiens]
Length = 591
Score = 32.3 bits (72), Expect = 0.33
Identities = 16/38 (42%), Positives = 24/38 (63%), Gaps = 3/38 (7%)
Query: 160 EGTHHVLVSWAPRGSKVPPAQGLWFLKPQGKMQGGNDR 197
E H++L + A RG + A LW L+P+ + QGG+DR
Sbjct: 460 EAPHYLLWAAAVRGQE---AHSLWPLQPRARRQGGSDR 494
>gi|78190492 retinitis pigmentosa GTPase regulator isoform C [Homo
sapiens]
Length = 1152
Score = 32.3 bits (72), Expect = 0.33
Identities = 24/105 (22%), Positives = 49/105 (46%), Gaps = 2/105 (1%)
Query: 22 DGFKHQQKAVGADGGQEQDAGVHVEQDEGGQDAAGGPAKGPVVMLYNGREQDGQRQAGEE 81
+G + + + G + G+E + E+ EG + G +G G E++G+ + GEE
Sbjct: 848 EGEEEEGEGKGEEEGEEGEGEEEGEEGEGEGEEEEGEGEGEEEGEGEGEEEEGEGE-GEE 906
Query: 82 VGYRQVEEPDGIDGPLGLECRHPDHQGIAQHSHQEDDCKDDQGQD 126
G + EE +G +G E + +G + E + + +G++
Sbjct: 907 EGEGEGEEEEG-EGKGEEEGEEGEGEGEEEEGEGEGEDGEGEGEE 950
>gi|239754006 PREDICTED: hypothetical protein [Homo sapiens]
Length = 486
Score = 31.2 bits (69), Expect = 0.73
Identities = 29/118 (24%), Positives = 46/118 (38%), Gaps = 5/118 (4%)
Query: 8 RDPGQASPSEVLAPDGFKHQQKAVGADGGQEQDAGVHVEQDEGGQDAAGGPAKGPVVMLY 67
R+ Q+ V G Q A+ G + +AG E+ G A A GP+ +
Sbjct: 222 REARQSLVHVVAVEIGMVDGQVALDTHGADDAEAGQAEEEQNEGAVLAQRLAPGPLALHV 281
Query: 68 NGREQDGQRQAGEEVGYRQVEEPDGIDGPLGL----ECRHPDHQGIAQHSHQEDDCKD 121
G +Q+ ++VG Q ++G L L +H D +A H E +D
Sbjct: 282 RGDGHRAHQQSAQQVGDSQ-PTYQRVEGRLLLLLARLAQHHDGHQVAHHPEDEHHRRD 338
>gi|239748537 PREDICTED: hypothetical protein [Homo sapiens]
Length = 486
Score = 31.2 bits (69), Expect = 0.73
Identities = 29/118 (24%), Positives = 46/118 (38%), Gaps = 5/118 (4%)
Query: 8 RDPGQASPSEVLAPDGFKHQQKAVGADGGQEQDAGVHVEQDEGGQDAAGGPAKGPVVMLY 67
R+ Q+ V G Q A+ G + +AG E+ G A A GP+ +
Sbjct: 222 REARQSLVHVVAVEIGMVDGQVALDTHGADDAEAGQAEEEQNEGAVLAQRLAPGPLALHV 281
Query: 68 NGREQDGQRQAGEEVGYRQVEEPDGIDGPLGL----ECRHPDHQGIAQHSHQEDDCKD 121
G +Q+ ++VG Q ++G L L +H D +A H E +D
Sbjct: 282 RGDGHRAHQQSAQQVGDSQ-PTYQRVEGRLLLLLARLAQHHDGHQVAHHPEDEHHRRD 338
>gi|239742520 PREDICTED: hypothetical protein [Homo sapiens]
Length = 486
Score = 31.2 bits (69), Expect = 0.73
Identities = 29/118 (24%), Positives = 46/118 (38%), Gaps = 5/118 (4%)
Query: 8 RDPGQASPSEVLAPDGFKHQQKAVGADGGQEQDAGVHVEQDEGGQDAAGGPAKGPVVMLY 67
R+ Q+ V G Q A+ G + +AG E+ G A A GP+ +
Sbjct: 222 REARQSLVHVVAVEIGMVDGQVALDTHGADDAEAGQAEEEQNEGAVLAQRLAPGPLALHV 281
Query: 68 NGREQDGQRQAGEEVGYRQVEEPDGIDGPLGL----ECRHPDHQGIAQHSHQEDDCKD 121
G +Q+ ++VG Q ++G L L +H D +A H E +D
Sbjct: 282 RGDGHRAHQQSAQQVGDSQ-PTYQRVEGRLLLLLARLAQHHDGHQVAHHPEDEHHRRD 338
>gi|63025206 hypothetical protein LOC221061 [Homo sapiens]
Length = 890
Score = 31.2 bits (69), Expect = 0.73
Identities = 30/121 (24%), Positives = 45/121 (37%), Gaps = 1/121 (0%)
Query: 6 SRRDPGQASPSEVLAPDGFKHQQKAVGADGGQEQDAGVHVEQDEGGQDAAGGPAKGPVVM 65
+R+ G A + P +HQQK A V+++ E G P
Sbjct: 752 ARKGRGDALSLQQNYPPVQEHQQKEPRAPDSTAYTQLVYLDDVEQSGSECGTTVCTPEDS 811
Query: 66 LYNGREQDGQRQAGEEVGYRQVEEPDGIDGPLGLECRHPDHQGIAQHSHQEDDCKDDQGQ 125
+ R++G ++ Q EE E HQ + H +EDD DDQG+
Sbjct: 812 ALRCLLEGSSRRSGGQLPSLQ-EETTRRTADAPSEPAASPHQRRSAHEEEEDDDDDDQGE 870
Query: 126 D 126
D
Sbjct: 871 D 871
>gi|239742114 PREDICTED: similar to hCG2023245 [Homo sapiens]
Length = 329
Score = 30.8 bits (68), Expect = 0.96
Identities = 26/87 (29%), Positives = 29/87 (33%), Gaps = 1/87 (1%)
Query: 5 RSRRDPGQASPSEVLAPDGFKHQQKAVGADGGQEQDAGVHVEQDEG-GQDAAGGPAKGPV 63
R P E G K G DG D G V +G G AAGG GP
Sbjct: 199 RGSAQPEDCEDGEDAPRPGRKKTGTQTGGDGRGVSDVGAGVRGCQGRGVGAAGGSVAGPG 258
Query: 64 VMLYNGREQDGQRQAGEEVGYRQVEEP 90
+ L R+ R G EEP
Sbjct: 259 LKLVIERQLRRARSDSSFYGNTLFEEP 285
>gi|32140760 collagen, type XXVII, alpha 1 [Homo sapiens]
Length = 1860
Score = 30.8 bits (68), Expect = 0.96
Identities = 27/92 (29%), Positives = 33/92 (35%), Gaps = 9/92 (9%)
Query: 7 RRDPGQASPSEVLAPDGFKHQQKAVGADGGQEQDAGVHVEQDEGGQDAAGGPAKGPVVML 66
R +PG S + PDG K D G G H E+ + G GP P V
Sbjct: 1185 RGEPGLEGDSGPMGPDGLK-------GDRGDPGPDGEHGEKGQEGLMGEDGPPGPPGVTG 1237
Query: 67 YNGREQDGQRQAGEEVGYRQVEEPDGIDGPLG 98
G E +Q E G + G G LG
Sbjct: 1238 VRGPEGKSGKQG--EKGRTGAKGAKGYQGQLG 1267
Score = 28.5 bits (62), Expect = 4.7
Identities = 29/113 (25%), Positives = 43/113 (38%), Gaps = 16/113 (14%)
Query: 1 MATARSRRDPGQASPSEVLAPDGFKHQQKAVGADG-----GQEQDAGVHVEQDEGGQDAA 55
M A R +PG A P GFK + G G G E G+ Q E G +
Sbjct: 1468 MGPAGKRGNPGVAGLPGAQGPPGFKGESGLPGQLGPPGKRGTEGRTGLPGNQGEPG--SK 1525
Query: 56 GGPAKGPVVMLYNGREQDGQRQAGEEVGYRQVEEP---------DGIDGPLGL 99
G P + G + ++G++ ++ P +GI GPLG+
Sbjct: 1526 GQPGDSGEMGFPGMAGLFGPKGPPGDIGFKGIQGPRGPPGLMGKEGIVGPLGI 1578
>gi|42476101 TFIIA alpha, p55 isoform 2 [Homo sapiens]
Length = 337
Score = 30.8 bits (68), Expect = 0.96
Identities = 32/123 (26%), Positives = 49/123 (39%), Gaps = 23/123 (18%)
Query: 12 QASPSEVLAPDGFKHQQKAVGADGGQEQDAGVHVEQDEGGQDAAGGPAKGPVVMLYNGR- 70
Q P+ V AP + Q A G Q Q A + P+V+ +G
Sbjct: 195 QVIPTTVAAPTPAQAQITATGQQQPQAQPA----------------QTQAPLVLQVDGTG 238
Query: 71 EQDGQRQAGEEVGYRQVEEPDGIDGPLGLECRHPDHQGIAQHSHQEDDCKDDQGQDVWNT 130
+ + EE Y EE D G E D Q + + EDD D++GQ++++T
Sbjct: 239 DTSSEEDEDEEEDYDDDEEEDKEKD--GAE----DGQVEEEPLNSEDDVSDEEGQELFDT 292
Query: 131 QRV 133
+ V
Sbjct: 293 ENV 295
>gi|7706735 TFIIA alpha, p55 isoform 1 [Homo sapiens]
Length = 376
Score = 30.8 bits (68), Expect = 0.96
Identities = 32/123 (26%), Positives = 49/123 (39%), Gaps = 23/123 (18%)
Query: 12 QASPSEVLAPDGFKHQQKAVGADGGQEQDAGVHVEQDEGGQDAAGGPAKGPVVMLYNGR- 70
Q P+ V AP + Q A G Q Q A + P+V+ +G
Sbjct: 234 QVIPTTVAAPTPAQAQITATGQQQPQAQPA----------------QTQAPLVLQVDGTG 277
Query: 71 EQDGQRQAGEEVGYRQVEEPDGIDGPLGLECRHPDHQGIAQHSHQEDDCKDDQGQDVWNT 130
+ + EE Y EE D G E D Q + + EDD D++GQ++++T
Sbjct: 278 DTSSEEDEDEEEDYDDDEEEDKEKD--GAE----DGQVEEEPLNSEDDVSDEEGQELFDT 331
Query: 131 QRV 133
+ V
Sbjct: 332 ENV 334
>gi|32307177 forkhead box G1 [Homo sapiens]
Length = 489
Score = 30.8 bits (68), Expect = 0.96
Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 8/49 (16%)
Query: 9 DPGQASPSEVLAPDGFKHQQKAVGADGGQEQDAGVHVEQDEGGQDAAGG 57
+PG P E LAP G ++K GA G +++ AG EGG+D GG
Sbjct: 129 EPG-GGPGE-LAPVGPDEKEKGAGAGGEEKKGAG------EGGKDGEGG 169
>gi|40068464 AT rich interactive domain 1B (SWI1-like) isoform 2
[Homo sapiens]
Length = 2191
Score = 30.8 bits (68), Expect = 0.96
Identities = 20/52 (38%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Query: 10 PGQASPSEVLAPDGFKHQQKAVG--ADGGQEQDAGVHVEQDEGGQDAAGGPA 59
P +SPS P Q A A GGQ+ AG+ + +D G Q AA PA
Sbjct: 380 PEYSSPSAPPPPPSQPQSQAAAAGAAAGGQQAAAGMGLGKDMGAQYAAASPA 431
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.137 0.432
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,876,814
Number of Sequences: 37866
Number of extensions: 592148
Number of successful extensions: 1235
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 81
Number of HSP's that attempted gapping in prelim test: 1175
Number of HSP's gapped (non-prelim): 149
length of query: 221
length of database: 18,247,518
effective HSP length: 98
effective length of query: 123
effective length of database: 14,536,650
effective search space: 1788007950
effective search space used: 1788007950
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.