Guide to the Human Genome
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Name: LOC100292393 Sequence: fasta or formatted (277aa) NCBI GI: 239754060
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.6         21           2
 C cysteine            2.5          7           1
 D aspartate           5.8         16           2
 E glutamate           5.8         16           2
 F phenylalanine       2.5          7           1
 G glycine             9.0         25           1
 H histidine           6.1         17           2
 I isoleucine          4.7         13           1
 K lysine              4.0         11           2
 L leucine             6.5         18           3
 M methionine          1.4          4           1
 N asparagine          5.4         15           1
 P proline             5.8         16           1
 Q glutamine           5.4         15           2
 R arginine            7.6         21           2
 S serine              8.3         23           2
 T threonine           4.0         11           1
 V valine              5.8         16           2
 W tryptophan          1.1          3           1
 Y tyrosine            0.7          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100291154          1.000   PREDICTED: hypothetical protein XP_002346734 
LOC100287744          0.987   PREDICTED: hypothetical protein XP_002342570 
LOC100291688          0.016   PREDICTED: hypothetical protein XP_002345241 
LOC100290054          0.016   PREDICTED: hypothetical protein XP_002348009 
LOC100287311          0.016   PREDICTED: hypothetical protein XP_002343729 
FBRSL1                0.011   fibrosin-like 1 
LOC100292515          0.009   PREDICTED: hypothetical protein 
LOC100289910          0.009   PREDICTED: hypothetical protein XP_002347211 
LOC100287264          0.009   PREDICTED: hypothetical protein XP_002343075 
GTSE1                 0.009   G-2 and S-phase expressed 1 
CSMD3                 0.007   CUB and Sushi multiple domains 3 isoform 2 
CSMD3                 0.007   CUB and Sushi multiple domains 3 isoform 3 
CSMD3                 0.007   CUB and Sushi multiple domains 3 isoform 1 
GFRAL                 0.005   GDNF family receptor alpha like 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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