Guide to the Human Genome
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Name: TCN1 Sequence: fasta or formatted (433aa) NCBI GI: 21071008
Description:

transcobalamin I precursor

Referenced in:

Neutrophils, Eosinophils, and Basophils
Vitamin Pathways, Coenzymes, and 1-Carbon Metabolism

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.5         24           3
 C cysteine            2.1          9           1
 D aspartate           3.2         14           1
 E glutamate           6.7         29           2
 F phenylalanine       3.7         16           1
 G glycine             6.0         26           2
 H histidine           0.9          4           1
 I isoleucine          6.5         28           2
 K lysine              4.8         21           2
 L leucine            10.9         47           3
 M methionine          2.5         11           1
 N asparagine          9.2         40           3
 P proline             2.8         12           2
 Q glutamine           5.1         22           2
 R arginine            2.3         10           1
 S serine              9.5         41           2
 T threonine           5.8         25           1
 V valine              6.9         30           2
 W tryptophan          0.9          4           1
 Y tyrosine            4.6         20           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   transcobalamin I precursor 
GIF                   0.191   gastric intrinsic factor (vitamin B synthesis) precu...
TCN2                  0.125   transcobalamin II precursor 
SCN5A                 0.007   voltage-gated sodium channel type V alpha isoform f...
SCN5A                 0.007   voltage-gated sodium channel type V alpha isoform a ...
SCN5A                 0.007   voltage-gated sodium channel type V alpha isoform b ...
SCN5A                 0.007   voltage-gated sodium channel type V alpha isoform d...
SCN5A                 0.007   voltage-gated sodium channel type V alpha isoform c...
LOC100294386          0.007   PREDICTED: similar to sodium channel, voltage-gated...
GAPDH                 0.007   glyceraldehyde-3-phosphate dehydrogenase 
IBTK                  0.006   inhibitor of Bruton's tyrosine kinase 
ANXA2                 0.006   annexin A2 isoform 2 
ANXA2                 0.006   annexin A2 isoform 2 
ANXA2                 0.006   annexin A2 isoform 1 
ANXA2                 0.006   annexin A2 isoform 2 
LOC646359             0.006   PREDICTED: similar to telomeric repeat binding fact...
LOC646359             0.006   PREDICTED: similar to telomeric repeat binding facto...
IGF1R                 0.005   insulin-like growth factor 1 receptor precursor [Homo...
LPHN1                 0.005   latrophilin 1 isoform 1 precursor 
LPHN1                 0.005   latrophilin 1 isoform 2 precursor 
LOC390940             0.005   PREDICTED: similar to R28379_1 
LOC390940             0.005   PREDICTED: similar to R28379_1 
LOC390940             0.005   PREDICTED: similar to R28379_1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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