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Search of human proteins with 239746120
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239746120 PREDICTED: hypothetical protein XP_002344194 [Homo
sapiens]
(160 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239757097 PREDICTED: hypothetical protein [Homo sapiens] 345 1e-95
gi|239751603 PREDICTED: hypothetical protein XP_002347927 [Homo ... 345 1e-95
gi|239746120 PREDICTED: hypothetical protein XP_002344194 [Homo ... 345 1e-95
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 37 0.009
gi|239754489 PREDICTED: hypothetical protein [Homo sapiens] 36 0.016
gi|239743069 PREDICTED: hypothetical protein XP_002342750 [Homo ... 36 0.016
gi|239508715 PREDICTED: hypothetical protein [Homo sapiens] 36 0.016
gi|239753721 PREDICTED: hypothetical protein [Homo sapiens] 35 0.027
gi|239748254 PREDICTED: hypothetical protein XP_002346600 [Homo ... 35 0.027
gi|239742155 PREDICTED: hypothetical protein XP_002342442 [Homo ... 35 0.027
gi|239757272 PREDICTED: hypothetical protein [Homo sapiens] 35 0.036
gi|239751775 PREDICTED: hypothetical protein [Homo sapiens] 35 0.036
gi|239746270 PREDICTED: hypothetical protein XP_002343719 [Homo ... 35 0.036
gi|239747677 PREDICTED: hypothetical protein [Homo sapiens] 34 0.047
gi|239741546 PREDICTED: hypothetical protein XP_002342233 [Homo ... 34 0.047
gi|42821110 hypothetical protein LOC340602 [Homo sapiens] 34 0.061
gi|239757607 PREDICTED: hypothetical protein [Homo sapiens] 33 0.10
gi|169208819 PREDICTED: similar to kinase D-interacting substrat... 33 0.10
gi|239752118 PREDICTED: hypothetical protein XP_002348116 [Homo ... 33 0.10
gi|169208593 PREDICTED: similar to kinase D-interacting substrat... 33 0.10
gi|239746620 PREDICTED: hypothetical protein XP_002344228 [Homo ... 33 0.10
gi|169208169 PREDICTED: similar to kinase D-interacting substrat... 33 0.10
gi|92859641 thymidine kinase 2, mitochondrial [Homo sapiens] 33 0.14
gi|194272140 dendrin [Homo sapiens] 33 0.14
gi|55770862 thyroglobulin [Homo sapiens] 32 0.18
gi|239755326 PREDICTED: hypothetical protein [Homo sapiens] 32 0.18
gi|34452723 gamma-aminobutyric acid A receptor, alpha 4 precurso... 32 0.18
gi|24307919 small nuclear ribonucleoprotein 27kDa (U4/U6.U5) [Ho... 32 0.18
gi|108773804 Fraser syndrome 1 [Homo sapiens] 32 0.18
gi|15055543 splicing factor, arginine/serine-rich 2B [Homo sapiens] 32 0.18
>gi|239757097 PREDICTED: hypothetical protein [Homo sapiens]
Length = 160
Score = 345 bits (884), Expect = 1e-95
Identities = 160/160 (100%), Positives = 160/160 (100%)
Query: 1 MLCPYRMMLSGLMPVALTWCAGPARRRRCRHRGSSRKACPSWHRSRSSRRRRCCSGGGSP 60
MLCPYRMMLSGLMPVALTWCAGPARRRRCRHRGSSRKACPSWHRSRSSRRRRCCSGGGSP
Sbjct: 1 MLCPYRMMLSGLMPVALTWCAGPARRRRCRHRGSSRKACPSWHRSRSSRRRRCCSGGGSP 60
Query: 61 GQCRSCSSGPGPRHCRARRGPSAHLAPGTQRTYMQETRLPRALLVGKTSMVSSSRWLYWK 120
GQCRSCSSGPGPRHCRARRGPSAHLAPGTQRTYMQETRLPRALLVGKTSMVSSSRWLYWK
Sbjct: 61 GQCRSCSSGPGPRHCRARRGPSAHLAPGTQRTYMQETRLPRALLVGKTSMVSSSRWLYWK 120
Query: 121 SARSVRCSFQRPGAPEEALRVPKGAAPAPPGPGSGSGTRE 160
SARSVRCSFQRPGAPEEALRVPKGAAPAPPGPGSGSGTRE
Sbjct: 121 SARSVRCSFQRPGAPEEALRVPKGAAPAPPGPGSGSGTRE 160
>gi|239751603 PREDICTED: hypothetical protein XP_002347927 [Homo
sapiens]
Length = 160
Score = 345 bits (884), Expect = 1e-95
Identities = 160/160 (100%), Positives = 160/160 (100%)
Query: 1 MLCPYRMMLSGLMPVALTWCAGPARRRRCRHRGSSRKACPSWHRSRSSRRRRCCSGGGSP 60
MLCPYRMMLSGLMPVALTWCAGPARRRRCRHRGSSRKACPSWHRSRSSRRRRCCSGGGSP
Sbjct: 1 MLCPYRMMLSGLMPVALTWCAGPARRRRCRHRGSSRKACPSWHRSRSSRRRRCCSGGGSP 60
Query: 61 GQCRSCSSGPGPRHCRARRGPSAHLAPGTQRTYMQETRLPRALLVGKTSMVSSSRWLYWK 120
GQCRSCSSGPGPRHCRARRGPSAHLAPGTQRTYMQETRLPRALLVGKTSMVSSSRWLYWK
Sbjct: 61 GQCRSCSSGPGPRHCRARRGPSAHLAPGTQRTYMQETRLPRALLVGKTSMVSSSRWLYWK 120
Query: 121 SARSVRCSFQRPGAPEEALRVPKGAAPAPPGPGSGSGTRE 160
SARSVRCSFQRPGAPEEALRVPKGAAPAPPGPGSGSGTRE
Sbjct: 121 SARSVRCSFQRPGAPEEALRVPKGAAPAPPGPGSGSGTRE 160
>gi|239746120 PREDICTED: hypothetical protein XP_002344194 [Homo
sapiens]
Length = 160
Score = 345 bits (884), Expect = 1e-95
Identities = 160/160 (100%), Positives = 160/160 (100%)
Query: 1 MLCPYRMMLSGLMPVALTWCAGPARRRRCRHRGSSRKACPSWHRSRSSRRRRCCSGGGSP 60
MLCPYRMMLSGLMPVALTWCAGPARRRRCRHRGSSRKACPSWHRSRSSRRRRCCSGGGSP
Sbjct: 1 MLCPYRMMLSGLMPVALTWCAGPARRRRCRHRGSSRKACPSWHRSRSSRRRRCCSGGGSP 60
Query: 61 GQCRSCSSGPGPRHCRARRGPSAHLAPGTQRTYMQETRLPRALLVGKTSMVSSSRWLYWK 120
GQCRSCSSGPGPRHCRARRGPSAHLAPGTQRTYMQETRLPRALLVGKTSMVSSSRWLYWK
Sbjct: 61 GQCRSCSSGPGPRHCRARRGPSAHLAPGTQRTYMQETRLPRALLVGKTSMVSSSRWLYWK 120
Query: 121 SARSVRCSFQRPGAPEEALRVPKGAAPAPPGPGSGSGTRE 160
SARSVRCSFQRPGAPEEALRVPKGAAPAPPGPGSGSGTRE
Sbjct: 121 SARSVRCSFQRPGAPEEALRVPKGAAPAPPGPGSGSGTRE 160
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 36.6 bits (83), Expect = 0.009
Identities = 32/103 (31%), Positives = 40/103 (38%), Gaps = 9/103 (8%)
Query: 22 GPARRRRCRHRGSSRKACPSWHRSRSS---------RRRRCCSGGGSPGQCRSCSSGPGP 72
G +R R RG SR P W RSRS+ +RR PG RS ++
Sbjct: 493 GRSRSRTPTKRGHSRSRSPQWRRSRSAQRWGRSRSPQRRGRSRSPQRPGWSRSRNTQRRG 552
Query: 73 RHCRARRGPSAHLAPGTQRTYMQETRLPRALLVGKTSMVSSSR 115
R ARRG S +P T+ T R +T SR
Sbjct: 553 RSRSARRGRSHSRSPATRGRSRSRTPARRGRSRSRTPARRRSR 595
Score = 28.9 bits (63), Expect = 2.0
Identities = 22/58 (37%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Query: 22 GPARRRRCRHRGSSRKACPSWHRSRSSRRRRCCSGGGSPG-QCRSCSSGPGPRHCRAR 78
G +R R RG SR P+ RSRS R S +P + RS S P R R R
Sbjct: 571 GRSRSRTPARRGRSRSRTPARRRSRSRTPTRRRSRSRTPARRGRSRSRTPARRRSRTR 628
Score = 28.5 bits (62), Expect = 2.6
Identities = 29/83 (34%), Positives = 36/83 (43%), Gaps = 10/83 (12%)
Query: 23 PARRRRCRHRGSSRKACPSWHRSRSSRRRRCCSGGGSPGQCRSCSSGPGPR-----HCRA 77
PARR R R R +R+ R+RS RRR S + RS S P R A
Sbjct: 609 PARRGRSRSRTPARRRS----RTRSPVRRRSRSRSPARRSGRSRSRTPARRGRSRSRTPA 664
Query: 78 RRGPSAHLAPGTQRTYMQETRLP 100
RRG S P +R+ +R P
Sbjct: 665 RRGRSRSRTP-ARRSGRSRSRTP 686
Score = 28.1 bits (61), Expect = 3.4
Identities = 29/76 (38%), Positives = 33/76 (43%), Gaps = 8/76 (10%)
Query: 23 PARRR---RCRHRGSSRKACPSWH---RSRSSRRRRCCSGGGSPGQCRSCSSGPGPRHCR 76
PARRR R R SR P+ RSR+ RRR S SP + RS S P R R
Sbjct: 589 PARRRSRSRTPTRRRSRSRTPARRGRSRSRTPARRR--SRTRSPVRRRSRSRSPARRSGR 646
Query: 77 ARRGPSAHLAPGTQRT 92
+R A RT
Sbjct: 647 SRSRTPARRGRSRSRT 662
Score = 27.7 bits (60), Expect = 4.4
Identities = 33/94 (35%), Positives = 37/94 (39%), Gaps = 4/94 (4%)
Query: 26 RRRCRHRGS---SRKACPSWHRSRSSRRRRCCSGGGSPGQCRSCSSGPGPRHCRAR-RGP 81
RRR R S SR+ S RSR +RRRR SG S R SS R R R R P
Sbjct: 1786 RRRDRSGSSQSTSRRRQRSRSRSRVTRRRRGGSGYHSRSPARQESSRTSSRRRRGRSRTP 1845
Query: 82 SAHLAPGTQRTYMQETRLPRALLVGKTSMVSSSR 115
RT + R+ T S SR
Sbjct: 1846 PTSRKRSRSRTSPAPWKRSRSRASPATHRRSRSR 1879
Score = 26.9 bits (58), Expect = 7.5
Identities = 21/69 (30%), Positives = 27/69 (39%), Gaps = 2/69 (2%)
Query: 23 PARRRRCRHRGSSRKACPSWHRSRSSRRRRCCSGGGSPGQCRSCSSGPGPRHCRARRGPS 82
PA+R+R SS + S S SS S S S SS P A+ GP
Sbjct: 2600 PAKRKRRSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSP--SPAKPGPQ 2657
Query: 83 AHLAPGTQR 91
A P + +
Sbjct: 2658 ALPKPASPK 2666
Score = 26.6 bits (57), Expect = 9.8
Identities = 34/128 (26%), Positives = 43/128 (33%), Gaps = 13/128 (10%)
Query: 23 PARRRRCRHRGSSRKACPSWHRSRSSRRRRCCSGGGSPGQCRSCSSGPGPRHCRARRGPS 82
PA + R HR +S + S SRS R S P P R G +
Sbjct: 253 PAPKSRRAHRSTSADSASSSDTSRSRSR----SAAAKTHTTALAGRSPSPASGRRGEGDA 308
Query: 83 AHLAPGTQRTYMQETRLPRALLVGKTSMVSSSRWLYWKSARSVRCSFQRPG-APEEALRV 141
PGT T Q P +T+ S K S RP +PE +
Sbjct: 309 PFSEPGTTST--QRPSSP------ETATKQPSSPYEDKDKDKKEKSATRPSPSPERSSTG 360
Query: 142 PKGAAPAP 149
P+ AP P
Sbjct: 361 PEPPAPTP 368
Score = 26.6 bits (57), Expect = 9.8
Identities = 26/75 (34%), Positives = 31/75 (41%), Gaps = 4/75 (5%)
Query: 21 AGPARRRRC--RHRGSSRKACPS-WHRSRSSRRRRCCSGGGSPGQC-RSCSSGPGPRHCR 76
+ P R R RHR S + P +SRSSRRRR S + R S P PR +
Sbjct: 1712 SSPETRSRTPPRHRRSPSVSSPEPAEKSRSSRRRRSASSPRTKTTSRRGRSPSPKPRGLQ 1771
Query: 77 ARRGPSAHLAPGTQR 91
R S T R
Sbjct: 1772 RSRSRSRREKTRTTR 1786
>gi|239754489 PREDICTED: hypothetical protein [Homo sapiens]
Length = 228
Score = 35.8 bits (81), Expect = 0.016
Identities = 29/82 (35%), Positives = 34/82 (41%), Gaps = 16/82 (19%)
Query: 19 WCAGPARRRRCRHRGSSR---------KACPSWHRSRSSRRRRCCSGGGSPGQCRSCSSG 69
W AG RR R +G+ +A PS R R +RRR GG G+ R
Sbjct: 94 WAAG---RRAQREQGAGAAVLADFGHVRAAPSGLRRRRLQRRRGGRGGRGAGRARK---- 146
Query: 70 PGPRHCRARRGPSAHLAPGTQR 91
PGP A R AH AP R
Sbjct: 147 PGPDRAGAERSLPAHRAPRLAR 168
>gi|239743069 PREDICTED: hypothetical protein XP_002342750 [Homo
sapiens]
Length = 231
Score = 35.8 bits (81), Expect = 0.016
Identities = 29/82 (35%), Positives = 34/82 (41%), Gaps = 16/82 (19%)
Query: 19 WCAGPARRRRCRHRGSSR---------KACPSWHRSRSSRRRRCCSGGGSPGQCRSCSSG 69
W AG RR R +G+ +A PS R R +RRR GG G+ R
Sbjct: 97 WAAG---RRAQREQGAGAAVLADFGHVRAAPSGLRRRRLQRRRGGRGGRGAGRARK---- 149
Query: 70 PGPRHCRARRGPSAHLAPGTQR 91
PGP A R AH AP R
Sbjct: 150 PGPDRAGAERSLPAHRAPRLAR 171
>gi|239508715 PREDICTED: hypothetical protein [Homo sapiens]
Length = 231
Score = 35.8 bits (81), Expect = 0.016
Identities = 29/82 (35%), Positives = 34/82 (41%), Gaps = 16/82 (19%)
Query: 19 WCAGPARRRRCRHRGSSR---------KACPSWHRSRSSRRRRCCSGGGSPGQCRSCSSG 69
W AG RR R +G+ +A PS R R +RRR GG G+ R
Sbjct: 97 WAAG---RRAQREQGAGAAVLADFGHVRAAPSGLRRRRLQRRRGGRGGRGAGRARK---- 149
Query: 70 PGPRHCRARRGPSAHLAPGTQR 91
PGP A R AH AP R
Sbjct: 150 PGPDRAGAERSLPAHRAPRLAR 171
>gi|239753721 PREDICTED: hypothetical protein [Homo sapiens]
Length = 342
Score = 35.0 bits (79), Expect = 0.027
Identities = 47/165 (28%), Positives = 61/165 (36%), Gaps = 39/165 (23%)
Query: 16 ALTWCAGPAR----RRRCRH---------RGSSRKACPSWHRSRSSRRRRCCSGGGSPGQ 62
A +W GP R RR CR RG S + HR RRR GGGSP
Sbjct: 78 AASWAPGPLREQGTRRGCRRSLEQPRERARGQSSLRAAAHHRHNPGRRR----GGGSPAA 133
Query: 63 CRS------CSSGPGPRHCRARRGPS------AHLAPGTQRTYMQETRLPRALLVGKTSM 110
+ G GPR R G S + +A RT + PR +L+ +
Sbjct: 134 REGDAAGWLLAPGLGPRLRGGRGGWSPAPKAGSPMAAAPGRTCEGKRTAPRRMLLPDSPY 193
Query: 111 VSSSRWLYWKSARSVRC---SFQRPGAPEEALRVPKGAAPAPPGP 152
+ AR+ C + +RP AP A P+G P P
Sbjct: 194 AGRP-----QRARTSLCAAPASRRPPAPTVA--APRGLETRPALP 231
>gi|239748254 PREDICTED: hypothetical protein XP_002346600 [Homo
sapiens]
Length = 342
Score = 35.0 bits (79), Expect = 0.027
Identities = 47/165 (28%), Positives = 61/165 (36%), Gaps = 39/165 (23%)
Query: 16 ALTWCAGPAR----RRRCRH---------RGSSRKACPSWHRSRSSRRRRCCSGGGSPGQ 62
A +W GP R RR CR RG S + HR RRR GGGSP
Sbjct: 78 AASWAPGPLREQGTRRGCRRSLEQPRERARGQSSLRAAAHHRHNPGRRR----GGGSPAA 133
Query: 63 CRS------CSSGPGPRHCRARRGPS------AHLAPGTQRTYMQETRLPRALLVGKTSM 110
+ G GPR R G S + +A RT + PR +L+ +
Sbjct: 134 REGDAAGWLLAPGLGPRLRGGRGGWSPAPKAGSPMAAAPGRTCEGKRTAPRRMLLPDSPY 193
Query: 111 VSSSRWLYWKSARSVRC---SFQRPGAPEEALRVPKGAAPAPPGP 152
+ AR+ C + +RP AP A P+G P P
Sbjct: 194 AGRP-----QRARTSLCAAPASRRPPAPTVA--APRGLETRPALP 231
>gi|239742155 PREDICTED: hypothetical protein XP_002342442 [Homo
sapiens]
Length = 342
Score = 35.0 bits (79), Expect = 0.027
Identities = 47/165 (28%), Positives = 61/165 (36%), Gaps = 39/165 (23%)
Query: 16 ALTWCAGPAR----RRRCRH---------RGSSRKACPSWHRSRSSRRRRCCSGGGSPGQ 62
A +W GP R RR CR RG S + HR RRR GGGSP
Sbjct: 78 AASWAPGPLREQGTRRGCRRSLEQPRERARGQSSLRAAAHHRHNPGRRR----GGGSPAA 133
Query: 63 CRS------CSSGPGPRHCRARRGPS------AHLAPGTQRTYMQETRLPRALLVGKTSM 110
+ G GPR R G S + +A RT + PR +L+ +
Sbjct: 134 REGDAAGWLLAPGLGPRLRGGRGGWSPAPKAGSPMAAAPGRTCEGKRTAPRRMLLPDSPY 193
Query: 111 VSSSRWLYWKSARSVRC---SFQRPGAPEEALRVPKGAAPAPPGP 152
+ AR+ C + +RP AP A P+G P P
Sbjct: 194 AGRP-----QRARTSLCAAPASRRPPAPTVA--APRGLETRPALP 231
>gi|239757272 PREDICTED: hypothetical protein [Homo sapiens]
Length = 314
Score = 34.7 bits (78), Expect = 0.036
Identities = 35/120 (29%), Positives = 45/120 (37%), Gaps = 21/120 (17%)
Query: 55 SGGGSPGQCRSCSSGPGPRHCRARRG---PSAHLAPGTQRTYMQETRLPRALLVGKTSMV 111
SGGG G+ RS G RG P PG Q + R+ ++ G T V
Sbjct: 196 SGGGITGEGRSKVRGRVEGEAWGSRGTMSPGGVALPGNQTPSPRVRRMAWEVISGSTRDV 255
Query: 112 SSSRWLYWKSARSVRCSFQRPGAPEE----------ALRVPKGAA---PAPPGPGSGSGT 158
ARS C+F+ P + A R+ A P PGPG+G GT
Sbjct: 256 RRE-----SGARSEGCTFREPPPADGSDCKFPISDGARRLSSSRAEFRPRRPGPGAGQGT 310
>gi|239751775 PREDICTED: hypothetical protein [Homo sapiens]
Length = 314
Score = 34.7 bits (78), Expect = 0.036
Identities = 35/120 (29%), Positives = 45/120 (37%), Gaps = 21/120 (17%)
Query: 55 SGGGSPGQCRSCSSGPGPRHCRARRG---PSAHLAPGTQRTYMQETRLPRALLVGKTSMV 111
SGGG G+ RS G RG P PG Q + R+ ++ G T V
Sbjct: 196 SGGGITGEGRSKVRGRVEGEAWGSRGTMSPGGVALPGNQTPSPRVRRMAWEVISGSTRDV 255
Query: 112 SSSRWLYWKSARSVRCSFQRPGAPEE----------ALRVPKGAA---PAPPGPGSGSGT 158
ARS C+F+ P + A R+ A P PGPG+G GT
Sbjct: 256 RRE-----SGARSEGCTFREPPPADGSDCKFPISDGARRLSSSRAEFRPRRPGPGAGQGT 310
>gi|239746270 PREDICTED: hypothetical protein XP_002343719 [Homo
sapiens]
Length = 314
Score = 34.7 bits (78), Expect = 0.036
Identities = 35/120 (29%), Positives = 45/120 (37%), Gaps = 21/120 (17%)
Query: 55 SGGGSPGQCRSCSSGPGPRHCRARRG---PSAHLAPGTQRTYMQETRLPRALLVGKTSMV 111
SGGG G+ RS G RG P PG Q + R+ ++ G T V
Sbjct: 196 SGGGITGEGRSKVRGRVEGEAWGSRGTMSPGGVALPGNQTPSPRVRRMAWEVISGSTRDV 255
Query: 112 SSSRWLYWKSARSVRCSFQRPGAPEE----------ALRVPKGAA---PAPPGPGSGSGT 158
ARS C+F+ P + A R+ A P PGPG+G GT
Sbjct: 256 RRE-----SGARSEGCTFREPPPADGSDCKFPISDGARRLSSSRAEFRPRRPGPGAGQGT 310
>gi|239747677 PREDICTED: hypothetical protein [Homo sapiens]
Length = 262
Score = 34.3 bits (77), Expect = 0.047
Identities = 17/32 (53%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 40 PSWHRSRSSRRRRCCSGGGSPGQCRSCSSGPG 71
PS R+ ++ RRC S GGSP +C CSS PG
Sbjct: 132 PSLRRAPINQPRRCQSSGGSPRRCH-CSSVPG 162
Score = 26.6 bits (57), Expect = 9.8
Identities = 31/105 (29%), Positives = 41/105 (39%), Gaps = 17/105 (16%)
Query: 58 GSPGQCRSCSSGPGPRHCRARRGP-------SAHLAPGTQRTYMQETRLPRALLVGKTSM 110
GS G+C+ S PGP + R P S G++ +E RA L S
Sbjct: 38 GSCGRCKG-SCVPGPSNARRSFAPFPLENWISYLRGRGSRSERGRECACARARLARARSP 96
Query: 111 VSSSRWLYWKSARSVRCSFQRPGAPEEALRVPK-GAAPAPPGPGS 154
S S + ++ P P L P+ G AP PPGP S
Sbjct: 97 HSMSPTHFHGASA--------PPPPPPRLAQPRAGPAPPPPGPPS 133
>gi|239741546 PREDICTED: hypothetical protein XP_002342233 [Homo
sapiens]
Length = 262
Score = 34.3 bits (77), Expect = 0.047
Identities = 17/32 (53%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 40 PSWHRSRSSRRRRCCSGGGSPGQCRSCSSGPG 71
PS R+ ++ RRC S GGSP +C CSS PG
Sbjct: 132 PSLRRAPINQPRRCQSSGGSPRRCH-CSSVPG 162
Score = 26.6 bits (57), Expect = 9.8
Identities = 31/105 (29%), Positives = 41/105 (39%), Gaps = 17/105 (16%)
Query: 58 GSPGQCRSCSSGPGPRHCRARRGP-------SAHLAPGTQRTYMQETRLPRALLVGKTSM 110
GS G+C+ S PGP + R P S G++ +E RA L S
Sbjct: 38 GSCGRCKG-SCVPGPSNARRSFAPFPLENWISYLRGRGSRSERGRECACARARLARARSP 96
Query: 111 VSSSRWLYWKSARSVRCSFQRPGAPEEALRVPK-GAAPAPPGPGS 154
S S + ++ P P L P+ G AP PPGP S
Sbjct: 97 HSMSPTHFHGASA--------PPPPPPRLAQPRAGPAPPPPGPPS 133
>gi|42821110 hypothetical protein LOC340602 [Homo sapiens]
Length = 503
Score = 33.9 bits (76), Expect = 0.061
Identities = 45/154 (29%), Positives = 63/154 (40%), Gaps = 27/154 (17%)
Query: 22 GPARRRRCRHRGSSRKACPS----WHRSRSSRRRRCCSGGGS-PGQC-RSCSSGPGPR-H 74
GPARR R G +R+ C S R R S G S PG R S PGP
Sbjct: 265 GPARRGRASVPGPARRGCDSAPGPARRGRDSAPVSAPRGRDSAPGSARRGRDSAPGPALR 324
Query: 75 CRARRGPSAH----LAPGTQRTYMQETRLPRALLVGKTSMVSSSRWLYWKSARSVRCSFQ 130
R R + H PGT + R+ L+ + S+ S+ S R +FQ
Sbjct: 325 VRTARSDAGHRSTSTTPGT--GLRSRSTQQRSALLSRRSLSGSADENPSCGTGSERLAFQ 382
Query: 131 -RPGAPE------------EALRVPKGAAPAPPG 151
R G+P+ A+R+ + ++P+PPG
Sbjct: 383 SRSGSPDPEVPSRASPPVWHAVRM-RASSPSPPG 415
>gi|239757607 PREDICTED: hypothetical protein [Homo sapiens]
Length = 120
Score = 33.1 bits (74), Expect = 0.10
Identities = 20/55 (36%), Positives = 23/55 (41%), Gaps = 5/55 (9%)
Query: 33 GSSRKACPSWHRSRSSRRRRCCSGGGSPGQCRSCSSGPGPRHCRARRGPSAHLAP 87
G +R C SR SR RRC + GG R PRH A G + H P
Sbjct: 20 GPARPDC-----SRYSRLRRCDTPGGGDAGDRRAGPAAAPRHHSAGEGRAGHKGP 69
>gi|169208819 PREDICTED: similar to kinase D-interacting substrate
220 [Homo sapiens]
Length = 380
Score = 33.1 bits (74), Expect = 0.10
Identities = 39/138 (28%), Positives = 51/138 (36%), Gaps = 17/138 (12%)
Query: 23 PARRRRCRHRGSSRKACPSWHRSRSSRRRRCCSGGGSPGQCRSCSSGPGPRHC----RAR 78
PA HR S + P +R +R + GG G+ S G R
Sbjct: 198 PAPAASPEHRRPSPRRLPRPLLARFAR-----AAGGHGGEAGSAGKNSGRHRAQGSERPE 252
Query: 79 RGPSAHLAPGTQRTYMQETRLPRALLVGKTSMVSSSRWLYWKSARSVRCSFQRPGAPEEA 138
G S LA G T + RL L+ + SS W+S + GAP
Sbjct: 253 LGRSMSLALGAV-TEEEAARLRAGALMALPNSPQSSGTGRWRSQEVLE------GAPPTL 305
Query: 139 LRVPKGAAPAPP-GPGSG 155
+ P G +P P GPGSG
Sbjct: 306 AQAPIGLSPHPEGGPGSG 323
>gi|239752118 PREDICTED: hypothetical protein XP_002348116 [Homo
sapiens]
Length = 120
Score = 33.1 bits (74), Expect = 0.10
Identities = 20/55 (36%), Positives = 23/55 (41%), Gaps = 5/55 (9%)
Query: 33 GSSRKACPSWHRSRSSRRRRCCSGGGSPGQCRSCSSGPGPRHCRARRGPSAHLAP 87
G +R C SR SR RRC + GG R PRH A G + H P
Sbjct: 20 GPARPDC-----SRYSRLRRCDTPGGGDAGDRRAGPAAAPRHHSAGEGRAGHKGP 69
>gi|169208593 PREDICTED: similar to kinase D-interacting substrate
220 [Homo sapiens]
Length = 380
Score = 33.1 bits (74), Expect = 0.10
Identities = 39/138 (28%), Positives = 51/138 (36%), Gaps = 17/138 (12%)
Query: 23 PARRRRCRHRGSSRKACPSWHRSRSSRRRRCCSGGGSPGQCRSCSSGPGPRHC----RAR 78
PA HR S + P +R +R + GG G+ S G R
Sbjct: 198 PAPAASPEHRRPSPRRLPRPLLARFAR-----AAGGHGGEAGSAGKNSGRHRAQGSERPE 252
Query: 79 RGPSAHLAPGTQRTYMQETRLPRALLVGKTSMVSSSRWLYWKSARSVRCSFQRPGAPEEA 138
G S LA G T + RL L+ + SS W+S + GAP
Sbjct: 253 LGRSMSLALGAV-TEEEAARLRAGALMALPNSPQSSGTGRWRSQEVLE------GAPPTL 305
Query: 139 LRVPKGAAPAPP-GPGSG 155
+ P G +P P GPGSG
Sbjct: 306 AQAPIGLSPHPEGGPGSG 323
>gi|239746620 PREDICTED: hypothetical protein XP_002344228 [Homo
sapiens]
Length = 120
Score = 33.1 bits (74), Expect = 0.10
Identities = 20/55 (36%), Positives = 23/55 (41%), Gaps = 5/55 (9%)
Query: 33 GSSRKACPSWHRSRSSRRRRCCSGGGSPGQCRSCSSGPGPRHCRARRGPSAHLAP 87
G +R C SR SR RRC + GG R PRH A G + H P
Sbjct: 20 GPARPDC-----SRYSRLRRCDTPGGGDAGDRRAGPAAAPRHHSAGEGRAGHKGP 69
>gi|169208169 PREDICTED: similar to kinase D-interacting substrate
220 [Homo sapiens]
Length = 380
Score = 33.1 bits (74), Expect = 0.10
Identities = 39/138 (28%), Positives = 51/138 (36%), Gaps = 17/138 (12%)
Query: 23 PARRRRCRHRGSSRKACPSWHRSRSSRRRRCCSGGGSPGQCRSCSSGPGPRHC----RAR 78
PA HR S + P +R +R + GG G+ S G R
Sbjct: 198 PAPAASPEHRRPSPRRLPRPLLARFAR-----AAGGHGGEAGSAGKNSGRHRAQGSERPE 252
Query: 79 RGPSAHLAPGTQRTYMQETRLPRALLVGKTSMVSSSRWLYWKSARSVRCSFQRPGAPEEA 138
G S LA G T + RL L+ + SS W+S + GAP
Sbjct: 253 LGRSMSLALGAV-TEEEAARLRAGALMALPNSPQSSGTGRWRSQEVLE------GAPPTL 305
Query: 139 LRVPKGAAPAPP-GPGSG 155
+ P G +P P GPGSG
Sbjct: 306 AQAPIGLSPHPEGGPGSG 323
>gi|92859641 thymidine kinase 2, mitochondrial [Homo sapiens]
Length = 307
Score = 32.7 bits (73), Expect = 0.14
Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Query: 24 ARRRRCRHRGSSRKACPSWHRSRSSRRRRCCSGGGSPGQCRSCSSGPGPRHCRARRGP 81
+ ++ R GS+R A W + R C G GS G S +SGPGPR + R P
Sbjct: 28 SHKKEPRASGSARPAMLLWPLRGWAARALRCFGPGSRG---SPASGPGPRRVQRRAWP 82
>gi|194272140 dendrin [Homo sapiens]
Length = 711
Score = 32.7 bits (73), Expect = 0.14
Identities = 39/148 (26%), Positives = 54/148 (36%), Gaps = 13/148 (8%)
Query: 4 PYRMMLSGLMPVALTWCAGPARRRRCRHRGSSRKACPSWHRSRSSRRRRCCSGGGSPGQC 63
P R S ++ A W AGP R R + RKA ++ + R+R +GG
Sbjct: 82 PRRPWASRVLQEATNWRAGPLAEVRAREQ-EKRKAASQEREAKETERKRRKAGGAR---- 136
Query: 64 RSCSSGPGPRHCRARRGPSAHLAPGTQRTYMQETRLPRALLVGKTSMVSSSRWLYWKSAR 123
S PG R P G E P VG+ S+ SA
Sbjct: 137 ---RSPPGRPRPEPRNAPRVAQLAGLPAPLRPERLAP----VGRAPRPSAQPQSDPGSAW 189
Query: 124 SVRCSFQRPGAPE-EALRVPKGAAPAPP 150
+ +RPG P EA + +G+A P
Sbjct: 190 AGPWGGRRPGPPSYEAHLLLRGSAGTAP 217
>gi|55770862 thyroglobulin [Homo sapiens]
Length = 2768
Score = 32.3 bits (72), Expect = 0.18
Identities = 31/94 (32%), Positives = 37/94 (39%), Gaps = 12/94 (12%)
Query: 6 RMMLSGLMPVALTWCAGPARRRRCRHRGSSRKACPS-WHRSRSSRRRRCCSGGGSPGQCR 64
R+ SG A TWC PA R SS CPS + +S R S G P CR
Sbjct: 1116 RLQASG----AGTWCVDPASGEELRPGSSSSAQCPSLCNVLKSGVLSRRVSPGYVPA-CR 1170
Query: 65 SCSSGPGPRHCRARRG------PSAHLAPGTQRT 92
+ G P C +G S PGT+ T
Sbjct: 1171 AEDGGFSPVQCDQAQGSCWCVMDSGEEVPGTRVT 1204
>gi|239755326 PREDICTED: hypothetical protein [Homo sapiens]
Length = 375
Score = 32.3 bits (72), Expect = 0.18
Identities = 34/138 (24%), Positives = 49/138 (35%), Gaps = 8/138 (5%)
Query: 21 AGPARRRRCRHRGSSRKACPSWHRSRSSRRRRCCSGGGSPGQCRSCSSGPGPRHCRARRG 80
+G + C+ G+S +C SW SR+S C S G S C SC S C +
Sbjct: 230 SGTSSTCSCQSSGTSSTSC-SWQSSRTSSTCSCQSSGTSSTSC-SCQSSGTSSTCSCQSS 287
Query: 81 PSAHLAPGTQRTYMQETRLPRALLVGKTSMVSSSRWLYWKSARSVRCSFQRPGAPEEALR 140
++ + Q + T + S SS+ S S CS Q G +
Sbjct: 288 GTSSTSCSCQSSRTSST------CSCQFSRTSSTSCSCQSSRTSSTCSCQSSGTSSTSCI 341
Query: 141 VPKGAAPAPPGPGSGSGT 158
+ G SGT
Sbjct: 342 CWSSGTSSTSCSGRFSGT 359
Score = 29.3 bits (64), Expect = 1.5
Identities = 29/106 (27%), Positives = 42/106 (39%), Gaps = 10/106 (9%)
Query: 29 CRHRGSSRKACPSWHRSRSSRRRRCCSGGGSPGQCRSCSSGPGPRHCRARRGPSAHLAPG 88
C+ G+S +C +W SR+S C S G S SC S C + ++ +
Sbjct: 169 CQSSGTSSTSC-NWQSSRTSSTCSCQSSGTS-STSYSCQSSGTSSTCSCQSSGTSSTSCS 226
Query: 89 TQRTYMQETRLPRALLVGKTSMVSSSRWLYWKSAR-SVRCSFQRPG 133
Q + T S +SS W+S+R S CS Q G
Sbjct: 227 CQSSGTSST-------CSCQSSGTSSTSCSWQSSRTSSTCSCQSSG 265
>gi|34452723 gamma-aminobutyric acid A receptor, alpha 4 precursor
[Homo sapiens]
Length = 554
Score = 32.3 bits (72), Expect = 0.18
Identities = 24/100 (24%), Positives = 41/100 (41%), Gaps = 4/100 (4%)
Query: 55 SGGGSPGQCRSCSSGPGPRHCRARRGPSAHLAPGTQRTYMQETRLPRALLVGKTSMVSSS 114
S G+P + S P R A +A P T ++ +PR VG +S+
Sbjct: 420 SSKGTPRSYLASSPNPFSRANAAETISAARALPSASPTSIRTGYMPRKASVGS----AST 475
Query: 115 RWLYWKSARSVRCSFQRPGAPEEALRVPKGAAPAPPGPGS 154
R ++ + ++ + GA + P +AP P G G+
Sbjct: 476 RHVFGSRLQRIKTTVNTIGATGKLSATPPPSAPPPSGSGT 515
>gi|24307919 small nuclear ribonucleoprotein 27kDa (U4/U6.U5) [Homo
sapiens]
Length = 155
Score = 32.3 bits (72), Expect = 0.18
Identities = 30/84 (35%), Positives = 37/84 (44%), Gaps = 9/84 (10%)
Query: 25 RRRRCRHRGSSRKACPSWHRSRSSRRRRCCSGGGSPGQCRSCSSGPGPRHCRARRGPSAH 84
R RR R R SR+ RSRS RRR SP + RS S P P + RR
Sbjct: 23 RERRRRERSRSRERDRRRSRSRSPHRRR----SRSPRRHRSTS--PSPSRLKERRDEE-- 74
Query: 85 LAPGTQRTYMQETRLPRALLVGKT 108
T+ T +E ++ L GKT
Sbjct: 75 -KKETKETKSKERQITEEDLEGKT 97
>gi|108773804 Fraser syndrome 1 [Homo sapiens]
Length = 4011
Score = 32.3 bits (72), Expect = 0.18
Identities = 18/53 (33%), Positives = 23/53 (43%), Gaps = 6/53 (11%)
Query: 31 HRGSSRKACPSWHRSRSSRRRRCCSGGGSPGQCRSCSSGPGPRHCRARRGPSA 83
H G CP + + ++ R + C C SCS GP P HC A P A
Sbjct: 585 HDGKCMSECPGGYYADATGRCKVCHNS-----CASCS-GPTPSHCTACSPPKA 631
>gi|15055543 splicing factor, arginine/serine-rich 2B [Homo sapiens]
Length = 282
Score = 32.3 bits (72), Expect = 0.18
Identities = 33/103 (32%), Positives = 47/103 (45%), Gaps = 4/103 (3%)
Query: 26 RRRCRHRGSSRKACPSWHRSRSSRRR-RCCSGGGSPGQCRSCSSGPGPRHCRARRGPSAH 84
R R R G R++ RSRS RRR R S G S + RS S G R+ R+ S +
Sbjct: 106 RGRSRGGGYGRRSRSYGRRSRSPRRRHRSRSRGPSCSRSRSRSRYRGSRYSRSPYSRSPY 165
Query: 85 LAPGTQRTYMQETRLPRALLVG---KTSMVSSSRWLYWKSARS 124
R+ +R + G +S S+SR+ + S+RS
Sbjct: 166 SRSRYSRSPYSRSRYRESRYGGSHYSSSGYSNSRYSRYHSSRS 208
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.133 0.454
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,005,537
Number of Sequences: 37866
Number of extensions: 495592
Number of successful extensions: 4023
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 233
Number of HSP's that attempted gapping in prelim test: 3637
Number of HSP's gapped (non-prelim): 557
length of query: 160
length of database: 18,247,518
effective HSP length: 94
effective length of query: 66
effective length of database: 14,688,114
effective search space: 969415524
effective search space used: 969415524
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.